NO01G05470, NO01G05470 (gene) Nannochloropsis oceanica

Overview
NameNO01G05470
Unique NameNO01G05470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1546
Alignment locationchr1:1502388..1503933 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1502388..1503933 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO01G05470 vs. NCBI_GenBank
Match: EWM22763.1 (hypothetical protein Naga_100297g3 [Nannochloropsis gaditana])

HSP 1 Score: 312.8 bits (800), Expect = 1.300e-81
Identity = 162/306 (52.94%), Postives = 220/306 (71.90%), Query Frame = 0 
Query:   15 AFSSHNHESKPLLPPASSPVGELSSSL--PSSSSQFFPLSSGXXXXXXXXXXXXXXXXXXXXXXXXXSLSPCISPFSCSPRFRDWLRPSKSTATVSALLDVWVPWLAYLALGVGANDFVLGGLVAAGVAMLGFLFQGYRFHGQRSLRTWPKVHGMGVLLTWVANAVFVAEVASDGDIATRYSLFVVISGVVLSNIFSLALGHPAMLDEAREHVSSEEEESHPLFIRMHTVASSILFILSLLQWLCVFLAAVVYPDDKALAPYLLLLFPVGSLLLALLLVSLYLRRQQKQLARALRPPFLRVDEEEG 319
            A    + E + L+ P +SPVG+LSSS   P++       ++G                           +  ISP S SPRFRDWLRPSK T++VSALLDVW+PWL YL +G+G+ +FV+GGLVAAGVA+ GF+FQ +RF+ QR+LRTWPK   +G+L+TWV NAV+V+ +AS+ + A+RY+L VVI+GVVLSN  ++ +GHPA+LDEA+EHV+SEEEE HPLF+RMHT+AS  L  LSLLQW C FLAA  +P+DKAL P LLL  P+GSL++ L++++LYLRR++K+L++A+R P L VD E+G
Sbjct:   12 AIFGQSQEKRTLVLPVTSPVGDLSSSSCPPTTQGSGSKNANGLPSKSVNSTPDGGNSDFKNKYTPFPPTTHSISPSSPSPRFRDWLRPSKMTSSVSALLDVWIPWLTYLGIGIGSENFVVGGLVAAGVAIAGFIFQAFRFYYQRTLRTWPKPQAVGILMTWVGNAVYVSRIASNKETASRYTLLVVITGVVLSNFIAIVMGHPALLDEAKEHVASEEEEKHPLFLRMHTIASYGLLFLSLLQWPCFFLAAFRFPNDKALTPILLLALPLGSLIITLVIITLYLRREEKRLSQAMRAPLLAVDVEQG 317
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BLAST of NO01G05470 vs. NCBI_GenBank
Match: XP_005855169.1 (hypothetical protein NGA_0130100 [Nannochloropsis gaditana CCMP526] >EKU21193.1 hypothetical protein NGA_0130100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 227.6 bits (579), Expect = 5.700e-56
Identity = 105/166 (63.25%), Postives = 140/166 (84.34%), Query Frame = 0 
Query:  104 TATVSALLDVWVPWLAYLALGVGANDFVLGGLVAAGVAMLGFLFQGYRFHGQRSLRTWPKVHGMGVLLTWVANAVFVAEVASDGDIATRYSLFVVISGVVLSNIFSLALGHPAMLDEAREHVSSEEEESHPLFIRMHTVASSILFILSLLQWLCVFLAAVVYPDDK 270
            T++VSALLDVW+PWL YL +G+G+ +FV+GGLVAAGVA+ GF+FQ +RF+ QR+LRTWPK   +G+L+TWV NAV+V+ +AS+ + A+RY+L VVI+GVVLSN  ++ +GHPA+LDEA+EHV+SEEEE HPLF+RMHT+AS  L  LSLL+W C FLAA  +P+DK
Sbjct:    2 TSSVSALLDVWIPWLTYLGIGIGSENFVVGGLVAAGVAIAGFIFQAFRFYYQRTLRTWPKPQAVGILMTWVGNAVYVSRIASNKETASRYTLLVVITGVVLSNFIAIVMGHPALLDEAKEHVASEEEEKHPLFLRMHTIASYGLLFLSLLEWPCFFLAAFRFPNDK 167
The following BLAST results are available for this feature:
BLAST of NO01G05470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22763.11.300e-8152.94hypothetical protein Naga_100297g3 [Nannochloropsi... [more]
XP_005855169.15.700e-5663.25hypothetical protein NGA_0130100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL000nonsL000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006305NSK006305Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05470.1NO01G05470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577812gene_576Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100297g3gene7683Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05470.1NO01G05470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05470 ID=NO01G05470|Name=NO01G05470|organism=Nannochloropsis oceanica|type=gene|length=1546bp
ATAGGCGACGCCCAAGCCAGACAAGAAGAAGAAGGCCTCAAAATCGCAAA
ATCGCCTGCGACGGGCTTTGGAGGCAGATATCAAAAGATGTCTTCCATAG
CCACTGTGAGCCACGAGCAAGCGGTCGTCGCATTTTCTTCCCATAATCAT
GAAAGTAAGCCTCTTCTGCCGCCAGCCTCTTCTCCAGTGGGCGAGTTGTC
GTCTTCTCTGCCCTCTTCGTCGTCCCAGTTCTTTCCTCTCTCTTCGGGTA
GTAAGAGTAGCGGCCGCCATTCAAGCAATAGCATCAGCAACAATTCACGC
AGCAGCACTCATGAAGCTTCGTCATCTTTGTCTCCTTGCATCTCGCCATT
CTCTTGTTCCCCACGCTTTCGGGACTGGCTGCGGCCTTCCAAATCCACCG
CTACAGTCTCTGCACTATTAGACGTCTGGGTCCCGTGGCTGGCCTATCTA
GCGTTGGGTGTGGGAGCAAATGATTTTGTTCTTGGCGGGCTTGTGGCAGC
AGGTGTGGCAATGTTGGGGTTTTTATTCCAGGGCTATCGGTTTCATGGAC
AGCGGAGTCTGAGGACCTGGCCAAAGGTGCATGGAATGGGGGTGCTCTTG
ACCTGGGTGGCCAATGCCGTGTTTGTGGCTGAGGTGGCGTCGGATGGAGA
CATCGCCACAgtgagtctaaagaggtgaaaggagtaggaaggggggtgac
acagaagattttcggagggtttccttacagataaattaatgacgtgctga
cacaccttcccttcttccttccctgcctccctgtatttaccctggcagCG
ATACTCTCTTTTCGTCGTCATTTCAGGTGTGGTTCTCTCCAATATCTTTT
CCCTTGCCCTCGGCCACCCAGCCATGCTGGACGAGGCGAGAGAACACGTC
TCGAGCGAGGAGGAGGAGAGTCATCCTCTGTTTATCAGGATGCACACAGT
GGCTTCTTCCATTCTCTTTATTCTGAGTCTATTGCAGTGGTTGTGCGTTT
TCCTGGCGGCAGTAGTATATCCGGATGATAAAGgtgtgtagagagggagg
caggatgggtaaggggggagggagggagggaaggaggaatatatttcgaa
tgaaggtgggaaggaggagaaggtatgggggacaatggaggaaatccagc
agagaatgaataaatacacacgcactttaactgtatgccatcctcttcta
ttcctctcactctccttcccttcgccacatctcagCTCTTGCCCCCTACC
TCCTCCTCCTCTTTCCAGTGGGAAGCCTTCTACTGGCCCTCCTTCTCGTC
TCCCTCTACCTCCGACGACAACAAAAGCAGCTGGCCCGTGCGTTGCGTCC
TCCCTTTCTCCGGGTGGATGAGGAGGAAGGAAGGAGTGAGGGAGGGAAAG
AGGACAACCGACTGCCGCCCACCAGTCCTCTTCTGACGAGTCTATAGGGC
TTCGAACGTAGATATGAGGAGGGGGGAGGAAAGAAGGGCGAGAGAGAGAA
GGGGAAAAAAGGGAAGAAAGAAAGAAACAAATTATGCTTTGAGTCC
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protein sequence of NO01G05470.1

>NO01G05470.1-protein ID=NO01G05470.1-protein|Name=NO01G05470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MSSIATVSHEQAVVAFSSHNHESKPLLPPASSPVGELSSSLPSSSSQFFP
LSSGSKSSGRHSSNSISNNSRSSTHEASSSLSPCISPFSCSPRFRDWLRP
SKSTATVSALLDVWVPWLAYLALGVGANDFVLGGLVAAGVAMLGFLFQGY
RFHGQRSLRTWPKVHGMGVLLTWVANAVFVAEVASDGDIATRYSLFVVIS
GVVLSNIFSLALGHPAMLDEAREHVSSEEEESHPLFIRMHTVASSILFIL
SLLQWLCVFLAAVVYPDDKALAPYLLLLFPVGSLLLALLLVSLYLRRQQK
QLARALRPPFLRVDEEEGRSEGGKEDNRLPPTSPLLTSL*
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Synonyms
Publications