NO01G05470.1, NO01G05470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05470.1
Unique NameNO01G05470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1206
Alignment locationchr1:1502388..1503933 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1502388..1503933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G05470.1 vs.
Match: EWM22763.1 (hypothetical protein Naga_100297g3 [Nannochloropsis gaditana])

HSP 1 Score: 313.2 bits (801), Expect = 1.000e-81
Identity = 168/310 (54.19%), Postives = 231/310 (74.52%), Query Frame = 0
Query:   15 AFSSHNHESKPLLPPASSPVGELSSSLPSSSSQFFPLSSGSKSSGRHSSNSISNNSRSSTHEASSSLSP------CISPFSCSPRFRDWLRPSKSTATVSALLDVWVPWLAYLALGVGANDFVLGGLVAAGVAMLGFLFQGYRFHGQRSLRTWPKVHGMGVLLTWVANAVFVAEVASDGDIATRYSLFVVISGVVLSNIFSLALGHPAMLDEAREHVSSEEEESHPLFIRMHTVASSILFILSLLQWLCVFLAAVVYPDDKALAPYLLLLFPVGSLLLALLLVSLYLRRQQKQLARALRPPFLRVDEEEG 319
            A    + E + L+ P +SPVG+LSSS    ++Q     SGSK++    S S+++       +  +  +P       ISP S SPRFRDWLRPSK T++VSALLDVW+PWL YL +G+G+ +FV+GGLVAAGVA+ GF+FQ +RF+ QR+LRTWPK   +G+L+TWV NAV+V+ +AS+ + A+RY+L VVI+GVVLSN  ++ +GHPA+LDEA+EHV+SEEEE HPLF+RMHT+AS  L  LSLLQW C FLAA  +P+DKAL P LLL  P+GSL++ L++++LYLRR++K+L++A+R P L VD E+G
Sbjct:   12 AIFGQSQEKRTLVLPVTSPVGDLSSSSCPPTTQ----GSGSKNANGLPSKSVNSTPDGGNSDFKNKYTPFPPTTHSISPSSPSPRFRDWLRPSKMTSSVSALLDVWIPWLTYLGIGIGSENFVVGGLVAAGVAIAGFIFQAFRFYYQRTLRTWPKPQAVGILMTWVGNAVYVSRIASNKETASRYTLLVVITGVVLSNFIAIVMGHPALLDEAKEHVASEEEEKHPLFLRMHTIASYGLLFLSLLQWPCFFLAAFRFPNDKALTPILLLALPLGSLIITLVIITLYLRREEKRLSQAMRAPLLAVDVEQG 317          
The following BLAST results are available for this feature:
BLAST of NO01G05470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22763.11.000e-8154.19hypothetical protein Naga_100297g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05470NO01G05470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05470.1NO01G05470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05470.1.cds1NO01G05470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05470.1.cds2NO01G05470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05470.1.cds3NO01G05470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05470.1 ID=NO01G05470.1|Name=NO01G05470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp
ATAGGCGACGCCCAAGCCAGACAAGAAGAAGAAGGCCTCAAAATCGCAAA
ATCGCCTGCGACGGGCTTTGGAGGCAGATATCAAAAGATGTCTTCCATAG
CCACTGTGAGCCACGAGCAAGCGGTCGTCGCATTTTCTTCCCATAATCAT
GAAAGTAAGCCTCTTCTGCCGCCAGCCTCTTCTCCAGTGGGCGAGTTGTC
GTCTTCTCTGCCCTCTTCGTCGTCCCAGTTCTTTCCTCTCTCTTCGGGTA
GTAAGAGTAGCGGCCGCCATTCAAGCAATAGCATCAGCAACAATTCACGC
AGCAGCACTCATGAAGCTTCGTCATCTTTGTCTCCTTGCATCTCGCCATT
CTCTTGTTCCCCACGCTTTCGGGACTGGCTGCGGCCTTCCAAATCCACCG
CTACAGTCTCTGCACTATTAGACGTCTGGGTCCCGTGGCTGGCCTATCTA
GCGTTGGGTGTGGGAGCAAATGATTTTGTTCTTGGCGGGCTTGTGGCAGC
AGGTGTGGCAATGTTGGGGTTTTTATTCCAGGGCTATCGGTTTCATGGAC
AGCGGAGTCTGAGGACCTGGCCAAAGGTGCATGGAATGGGGGTGCTCTTG
ACCTGGGTGGCCAATGCCGTGTTTGTGGCTGAGGTGGCGTCGGATGGAGA
CATCGCCACACGATACTCTCTTTTCGTCGTCATTTCAGGTGTGGTTCTCT
CCAATATCTTTTCCCTTGCCCTCGGCCACCCAGCCATGCTGGACGAGGCG
AGAGAACACGTCTCGAGCGAGGAGGAGGAGAGTCATCCTCTGTTTATCAG
GATGCACACAGTGGCTTCTTCCATTCTCTTTATTCTGAGTCTATTGCAGT
GGTTGTGCGTTTTCCTGGCGGCAGTAGTATATCCGGATGATAAAGCTCTT
GCCCCCTACCTCCTCCTCCTCTTTCCAGTGGGAAGCCTTCTACTGGCCCT
CCTTCTCGTCTCCCTCTACCTCCGACGACAACAAAAGCAGCTGGCCCGTG
CGTTGCGTCCTCCCTTTCTCCGGGTGGATGAGGAGGAAGGAAGGAGTGAG
GGAGGGAAAGAGGACAACCGACTGCCGCCCACCAGTCCTCTTCTGACGAG
TCTATAGGGCTTCGAACGTAGATATGAGGAGGGGGGAGGAAAGAAGGGCG
AGAGAGAGAAGGGGAAAAAAGGGAAGAAAGAAAGAAACAAATTATGCTTT
GAGTCC
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protein sequence of NO01G05470.1

>NO01G05470.1-protein ID=NO01G05470.1-protein|Name=NO01G05470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MSSIATVSHEQAVVAFSSHNHESKPLLPPASSPVGELSSSLPSSSSQFFP
LSSGSKSSGRHSSNSISNNSRSSTHEASSSLSPCISPFSCSPRFRDWLRP
SKSTATVSALLDVWVPWLAYLALGVGANDFVLGGLVAAGVAMLGFLFQGY
RFHGQRSLRTWPKVHGMGVLLTWVANAVFVAEVASDGDIATRYSLFVVIS
GVVLSNIFSLALGHPAMLDEAREHVSSEEEESHPLFIRMHTVASSILFIL
SLLQWLCVFLAAVVYPDDKALAPYLLLLFPVGSLLLALLLVSLYLRRQQK
QLARALRPPFLRVDEEEGRSEGGKEDNRLPPTSPLLTSL*
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mRNA from alignment at chr1:1502388..1503933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05470.1 ID=NO01G05470.1|Name=NO01G05470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1546bp|location=Sequence derived from alignment at chr1:1502388..1503933- (Nannochloropsis oceanica)
ATAGGCGACGCCCAAGCCAGACAAGAAGAAGAAGGCCTCAAAATCGCAAA ATCGCCTGCGACGGGCTTTGGAGGCAGATATCAAAAGATGTCTTCCATAG CCACTGTGAGCCACGAGCAAGCGGTCGTCGCATTTTCTTCCCATAATCAT GAAAGTAAGCCTCTTCTGCCGCCAGCCTCTTCTCCAGTGGGCGAGTTGTC GTCTTCTCTGCCCTCTTCGTCGTCCCAGTTCTTTCCTCTCTCTTCGGGTA GTAAGAGTAGCGGCCGCCATTCAAGCAATAGCATCAGCAACAATTCACGC AGCAGCACTCATGAAGCTTCGTCATCTTTGTCTCCTTGCATCTCGCCATT CTCTTGTTCCCCACGCTTTCGGGACTGGCTGCGGCCTTCCAAATCCACCG CTACAGTCTCTGCACTATTAGACGTCTGGGTCCCGTGGCTGGCCTATCTA GCGTTGGGTGTGGGAGCAAATGATTTTGTTCTTGGCGGGCTTGTGGCAGC AGGTGTGGCAATGTTGGGGTTTTTATTCCAGGGCTATCGGTTTCATGGAC AGCGGAGTCTGAGGACCTGGCCAAAGGTGCATGGAATGGGGGTGCTCTTG ACCTGGGTGGCCAATGCCGTGTTTGTGGCTGAGGTGGCGTCGGATGGAGA CATCGCCACAGTGAGTCTAAAGAGGTGAAAGGAGTAGGAAGGGGGGTGAC ACAGAAGATTTTCGGAGGGTTTCCTTACAGATAAATTAATGACGTGCTGA CACACCTTCCCTTCTTCCTTCCCTGCCTCCCTGTATTTACCCTGGCAGCG ATACTCTCTTTTCGTCGTCATTTCAGGTGTGGTTCTCTCCAATATCTTTT CCCTTGCCCTCGGCCACCCAGCCATGCTGGACGAGGCGAGAGAACACGTC TCGAGCGAGGAGGAGGAGAGTCATCCTCTGTTTATCAGGATGCACACAGT GGCTTCTTCCATTCTCTTTATTCTGAGTCTATTGCAGTGGTTGTGCGTTT TCCTGGCGGCAGTAGTATATCCGGATGATAAAGGTGTGTAGAGAGGGAGG CAGGATGGGTAAGGGGGGAGGGAGGGAGGGAAGGAGGAATATATTTCGAA TGAAGGTGGGAAGGAGGAGAAGGTATGGGGGACAATGGAGGAAATCCAGC AGAGAATGAATAAATACACACGCACTTTAACTGTATGCCATCCTCTTCTA TTCCTCTCACTCTCCTTCCCTTCGCCACATCTCAGCTCTTGCCCCCTACC TCCTCCTCCTCTTTCCAGTGGGAAGCCTTCTACTGGCCCTCCTTCTCGTC TCCCTCTACCTCCGACGACAACAAAAGCAGCTGGCCCGTGCGTTGCGTCC TCCCTTTCTCCGGGTGGATGAGGAGGAAGGAAGGAGTGAGGGAGGGAAAG AGGACAACCGACTGCCGCCCACCAGTCCTCTTCTGACGAGTCTATAGGGC TTCGAACGTAGATATGAGGAGGGGGGAGGAAAGAAGGGCGAGAGAGAGAA GGGGAAAAAAGGGAAGAAAGAAAGAAACAAATTATGCTTTGAGTCC
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Coding sequence (CDS) from alignment at chr1:1502388..1503933-

>NO01G05470.1 ID=NO01G05470.1|Name=NO01G05470.1|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr1:1502388..1503933- (Nannochloropsis oceanica)
ATGTCTTCCATAGCCACTGTGAGCCACGAGCAAGCGGTCGTCGCATTTTC
TTCCCATAATCATGAAAGTAAGCCTCTTCTGCCGCCAGCCTCTTCTCCAG
TGGGCGAGTTGTCGTCTTCTCTGCCCTCTTCGTCGTCCCAGTTCTTTCCT
CTCTCTTCGGGTAGTAAGAGTAGCGGCCGCCATTCAAGCAATAGCATCAG
CAACAATTCACGCAGCAGCACTCATGAAGCTTCGTCATCTTTGTCTCCTT
GCATCTCGCCATTCTCTTGTTCCCCACGCTTTCGGGACTGGCTGCGGCCT
TCCAAATCCACCGCTACAGTCTCTGCACTATTAGACGTCTGGGTCCCGTG
GCTGGCCTATCTAGCGTTGGGTGTGGGAGCAAATGATTTTGTTCTTGGCG
GGCTTGTGGCAGCAGGTGTGGCAATGTTGGGGTTTTTATTCCAGGGCTAT
CGGTTTCATGGACAGCGGAGTCTGAGGACCTGGCCAAAGGTGCATGGAAT
GGGGGTGCTCTTGACCTGGGTGGCCAATGCCGTGTTTGTGGCTGAGGTGG
CGTCGGATGGAGACATCGCCACACGATACTCTCTTTTCGTCGTCATTTCA
GGTGTGGTTCTCTCCAATATCTTTTCCCTTGCCCTCGGCCACCCAGCCAT
GCTGGACGAGGCGAGAGAACACGTCTCGAGCGAGGAGGAGGAGAGTCATC
CTCTGTTTATCAGGATGCACACAGTGGCTTCTTCCATTCTCTTTATTCTG
AGTCTATTGCAGTGGTTGTGCGTTTTCCTGGCGGCAGTAGTATATCCGGA
TGATAAAGCTCTTGCCCCCTACCTCCTCCTCCTCTTTCCAGTGGGAAGCC
TTCTACTGGCCCTCCTTCTCGTCTCCCTCTACCTCCGACGACAACAAAAG
CAGCTGGCCCGTGCGTTGCGTCCTCCCTTTCTCCGGGTGGATGAGGAGGA
AGGAAGGAGTGAGGGAGGGAAAGAGGACAACCGACTGCCGCCCACCAGTC
CTCTTCTGACGAGTCTATAG
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Synonyms
Publications