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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1502388..1503933 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05470.1 vs.
Match: EWM22763.1 (hypothetical protein Naga_100297g3 [Nannochloropsis gaditana]) HSP 1 Score: 313.2 bits (801), Expect = 1.000e-81 Identity = 168/310 (54.19%), Postives = 231/310 (74.52%), Query Frame = 0
Query: 15 AFSSHNHESKPLLPPASSPVGELSSSLPSSSSQFFPLSSGSKSSGRHSSNSISNNSRSSTHEASSSLSP------CISPFSCSPRFRDWLRPSKSTATVSALLDVWVPWLAYLALGVGANDFVLGGLVAAGVAMLGFLFQGYRFHGQRSLRTWPKVHGMGVLLTWVANAVFVAEVASDGDIATRYSLFVVISGVVLSNIFSLALGHPAMLDEAREHVSSEEEESHPLFIRMHTVASSILFILSLLQWLCVFLAAVVYPDDKALAPYLLLLFPVGSLLLALLLVSLYLRRQQKQLARALRPPFLRVDEEEG 319
A + E + L+ P +SPVG+LSSS ++Q SGSK++ S S+++ + + +P ISP S SPRFRDWLRPSK T++VSALLDVW+PWL YL +G+G+ +FV+GGLVAAGVA+ GF+FQ +RF+ QR+LRTWPK +G+L+TWV NAV+V+ +AS+ + A+RY+L VVI+GVVLSN ++ +GHPA+LDEA+EHV+SEEEE HPLF+RMHT+AS L LSLLQW C FLAA +P+DKAL P LLL P+GSL++ L++++LYLRR++K+L++A+R P L VD E+G
Sbjct: 12 AIFGQSQEKRTLVLPVTSPVGDLSSSSCPPTTQ----GSGSKNANGLPSKSVNSTPDGGNSDFKNKYTPFPPTTHSISPSSPSPRFRDWLRPSKMTSSVSALLDVWIPWLTYLGIGIGSENFVVGGLVAAGVAIAGFIFQAFRFYYQRTLRTWPKPQAVGILMTWVGNAVYVSRIASNKETASRYTLLVVITGVVLSNFIAIVMGHPALLDEAKEHVASEEEEKHPLFLRMHTIASYGLLFLSLLQWPCFFLAAFRFPNDKALTPILLLALPLGSLIITLVIITLYLRREEKRLSQAMRAPLLAVDVEQG 317
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05470.1 ID=NO01G05470.1|Name=NO01G05470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp ATAGGCGACGCCCAAGCCAGACAAGAAGAAGAAGGCCTCAAAATCGCAAA ATCGCCTGCGACGGGCTTTGGAGGCAGATATCAAAAGATGTCTTCCATAG CCACTGTGAGCCACGAGCAAGCGGTCGTCGCATTTTCTTCCCATAATCAT GAAAGTAAGCCTCTTCTGCCGCCAGCCTCTTCTCCAGTGGGCGAGTTGTC GTCTTCTCTGCCCTCTTCGTCGTCCCAGTTCTTTCCTCTCTCTTCGGGTA GTAAGAGTAGCGGCCGCCATTCAAGCAATAGCATCAGCAACAATTCACGC AGCAGCACTCATGAAGCTTCGTCATCTTTGTCTCCTTGCATCTCGCCATT CTCTTGTTCCCCACGCTTTCGGGACTGGCTGCGGCCTTCCAAATCCACCG CTACAGTCTCTGCACTATTAGACGTCTGGGTCCCGTGGCTGGCCTATCTA GCGTTGGGTGTGGGAGCAAATGATTTTGTTCTTGGCGGGCTTGTGGCAGC AGGTGTGGCAATGTTGGGGTTTTTATTCCAGGGCTATCGGTTTCATGGAC AGCGGAGTCTGAGGACCTGGCCAAAGGTGCATGGAATGGGGGTGCTCTTG ACCTGGGTGGCCAATGCCGTGTTTGTGGCTGAGGTGGCGTCGGATGGAGA CATCGCCACACGATACTCTCTTTTCGTCGTCATTTCAGGTGTGGTTCTCT CCAATATCTTTTCCCTTGCCCTCGGCCACCCAGCCATGCTGGACGAGGCG AGAGAACACGTCTCGAGCGAGGAGGAGGAGAGTCATCCTCTGTTTATCAG GATGCACACAGTGGCTTCTTCCATTCTCTTTATTCTGAGTCTATTGCAGT GGTTGTGCGTTTTCCTGGCGGCAGTAGTATATCCGGATGATAAAGCTCTT GCCCCCTACCTCCTCCTCCTCTTTCCAGTGGGAAGCCTTCTACTGGCCCT CCTTCTCGTCTCCCTCTACCTCCGACGACAACAAAAGCAGCTGGCCCGTG CGTTGCGTCCTCCCTTTCTCCGGGTGGATGAGGAGGAAGGAAGGAGTGAG GGAGGGAAAGAGGACAACCGACTGCCGCCCACCAGTCCTCTTCTGACGAG TCTATAGGGCTTCGAACGTAGATATGAGGAGGGGGGAGGAAAGAAGGGCG AGAGAGAGAAGGGGAAAAAAGGGAAGAAAGAAAGAAACAAATTATGCTTT GAGTCC back to topprotein sequence of NO01G05470.1 >NO01G05470.1-protein ID=NO01G05470.1-protein|Name=NO01G05470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp MSSIATVSHEQAVVAFSSHNHESKPLLPPASSPVGELSSSLPSSSSQFFP LSSGSKSSGRHSSNSISNNSRSSTHEASSSLSPCISPFSCSPRFRDWLRP SKSTATVSALLDVWVPWLAYLALGVGANDFVLGGLVAAGVAMLGFLFQGY RFHGQRSLRTWPKVHGMGVLLTWVANAVFVAEVASDGDIATRYSLFVVIS GVVLSNIFSLALGHPAMLDEAREHVSSEEEESHPLFIRMHTVASSILFIL SLLQWLCVFLAAVVYPDDKALAPYLLLLFPVGSLLLALLLVSLYLRRQQK QLARALRPPFLRVDEEEGRSEGGKEDNRLPPTSPLLTSL* back to topmRNA from alignment at chr1:1502388..1503933- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05470.1 ID=NO01G05470.1|Name=NO01G05470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1546bp|location=Sequence derived from alignment at chr1:1502388..1503933- (Nannochloropsis oceanica) ATAGGCGACGCCCAAGCCAGACAAGAAGAAGAAGGCCTCAAAATCGCAAA
ATCGCCTGCGACGGGCTTTGGAGGCAGATATCAAAAGATGTCTTCCATAG
CCACTGTGAGCCACGAGCAAGCGGTCGTCGCATTTTCTTCCCATAATCAT
GAAAGTAAGCCTCTTCTGCCGCCAGCCTCTTCTCCAGTGGGCGAGTTGTC
GTCTTCTCTGCCCTCTTCGTCGTCCCAGTTCTTTCCTCTCTCTTCGGGTA
GTAAGAGTAGCGGCCGCCATTCAAGCAATAGCATCAGCAACAATTCACGC
AGCAGCACTCATGAAGCTTCGTCATCTTTGTCTCCTTGCATCTCGCCATT
CTCTTGTTCCCCACGCTTTCGGGACTGGCTGCGGCCTTCCAAATCCACCG
CTACAGTCTCTGCACTATTAGACGTCTGGGTCCCGTGGCTGGCCTATCTA
GCGTTGGGTGTGGGAGCAAATGATTTTGTTCTTGGCGGGCTTGTGGCAGC
AGGTGTGGCAATGTTGGGGTTTTTATTCCAGGGCTATCGGTTTCATGGAC
AGCGGAGTCTGAGGACCTGGCCAAAGGTGCATGGAATGGGGGTGCTCTTG
ACCTGGGTGGCCAATGCCGTGTTTGTGGCTGAGGTGGCGTCGGATGGAGA
CATCGCCACAGTGAGTCTAAAGAGGTGAAAGGAGTAGGAAGGGGGGTGAC
ACAGAAGATTTTCGGAGGGTTTCCTTACAGATAAATTAATGACGTGCTGA
CACACCTTCCCTTCTTCCTTCCCTGCCTCCCTGTATTTACCCTGGCAGCG
ATACTCTCTTTTCGTCGTCATTTCAGGTGTGGTTCTCTCCAATATCTTTT
CCCTTGCCCTCGGCCACCCAGCCATGCTGGACGAGGCGAGAGAACACGTC
TCGAGCGAGGAGGAGGAGAGTCATCCTCTGTTTATCAGGATGCACACAGT
GGCTTCTTCCATTCTCTTTATTCTGAGTCTATTGCAGTGGTTGTGCGTTT
TCCTGGCGGCAGTAGTATATCCGGATGATAAAGGTGTGTAGAGAGGGAGG
CAGGATGGGTAAGGGGGGAGGGAGGGAGGGAAGGAGGAATATATTTCGAA
TGAAGGTGGGAAGGAGGAGAAGGTATGGGGGACAATGGAGGAAATCCAGC
AGAGAATGAATAAATACACACGCACTTTAACTGTATGCCATCCTCTTCTA
TTCCTCTCACTCTCCTTCCCTTCGCCACATCTCAGCTCTTGCCCCCTACC
TCCTCCTCCTCTTTCCAGTGGGAAGCCTTCTACTGGCCCTCCTTCTCGTC
TCCCTCTACCTCCGACGACAACAAAAGCAGCTGGCCCGTGCGTTGCGTCC
TCCCTTTCTCCGGGTGGATGAGGAGGAAGGAAGGAGTGAGGGAGGGAAAG
AGGACAACCGACTGCCGCCCACCAGTCCTCTTCTGACGAGTCTATAGGGC
TTCGAACGTAGATATGAGGAGGGGGGAGGAAAGAAGGGCGAGAGAGAGAA
GGGGAAAAAAGGGAAGAAAGAAAGAAACAAATTATGCTTTGAGTCC back to topCoding sequence (CDS) from alignment at chr1:1502388..1503933- >NO01G05470.1 ID=NO01G05470.1|Name=NO01G05470.1|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr1:1502388..1503933- (Nannochloropsis oceanica) ATGTCTTCCATAGCCACTGTGAGCCACGAGCAAGCGGTCGTCGCATTTTC TTCCCATAATCATGAAAGTAAGCCTCTTCTGCCGCCAGCCTCTTCTCCAG TGGGCGAGTTGTCGTCTTCTCTGCCCTCTTCGTCGTCCCAGTTCTTTCCT CTCTCTTCGGGTAGTAAGAGTAGCGGCCGCCATTCAAGCAATAGCATCAG CAACAATTCACGCAGCAGCACTCATGAAGCTTCGTCATCTTTGTCTCCTT GCATCTCGCCATTCTCTTGTTCCCCACGCTTTCGGGACTGGCTGCGGCCT TCCAAATCCACCGCTACAGTCTCTGCACTATTAGACGTCTGGGTCCCGTG GCTGGCCTATCTAGCGTTGGGTGTGGGAGCAAATGATTTTGTTCTTGGCG GGCTTGTGGCAGCAGGTGTGGCAATGTTGGGGTTTTTATTCCAGGGCTAT CGGTTTCATGGACAGCGGAGTCTGAGGACCTGGCCAAAGGTGCATGGAAT GGGGGTGCTCTTGACCTGGGTGGCCAATGCCGTGTTTGTGGCTGAGGTGG CGTCGGATGGAGACATCGCCACACGATACTCTCTTTTCGTCGTCATTTCA GGTGTGGTTCTCTCCAATATCTTTTCCCTTGCCCTCGGCCACCCAGCCAT GCTGGACGAGGCGAGAGAACACGTCTCGAGCGAGGAGGAGGAGAGTCATC CTCTGTTTATCAGGATGCACACAGTGGCTTCTTCCATTCTCTTTATTCTG AGTCTATTGCAGTGGTTGTGCGTTTTCCTGGCGGCAGTAGTATATCCGGA TGATAAAGCTCTTGCCCCCTACCTCCTCCTCCTCTTTCCAGTGGGAAGCC TTCTACTGGCCCTCCTTCTCGTCTCCCTCTACCTCCGACGACAACAAAAG CAGCTGGCCCGTGCGTTGCGTCCTCCCTTTCTCCGGGTGGATGAGGAGGA AGGAAGGAGTGAGGGAGGGAAAGAGGACAACCGACTGCCGCCCACCAGTC CTCTTCTGACGAGTCTATAG back to top
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