NO01G05340, NO01G05340 (gene) Nannochloropsis oceanica

Overview
NameNO01G05340
Unique NameNO01G05340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1612
Alignment locationchr1:1425067..1426678 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1425067..1426678 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO01G05340 vs. NCBI_GenBank
Match: EWM22757.1 (hypothetical protein Naga_100516g2 [Nannochloropsis gaditana])

HSP 1 Score: 150.2 bits (378), Expect = 4.500e-33
Identity = 84/131 (64.12%), Postives = 104/131 (79.39%), Query Frame = 0 
Query:    1 MPTPLELMIPSTTSPESSPTHAKSQLKPQLSREPSRAAVARMQAIEMEGYLDVFFTYMECIGRLLKRLVSYAISIMTFLYTSIVIRLGLVLVSAIVIYYYVLLGLGKISGVNDPKLHEYFSANFFKQFWSW 132
            MPTPLEL IPSTTSPE SPT +K+ L+PQL  +PSRAAVARM A+E+EG L+  FTY EC  R+LKRLVSY +SI  F++TS+VIRLGL++V+ + +YY  LL LGKISGV DPKL +YFS + FK +W W
Sbjct:    1 MPTPLEL-IPSTTSPEPSPT-SKASLQPQL-YQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKLQDYFSYSSFKNYWGW 128
[Close]
BLAST of NO01G05340 vs. NCBI_GenBank
Match: EWM22758.1 (hypothetical protein Naga_100516g2 [Nannochloropsis gaditana])

HSP 1 Score: 130.6 bits (327), Expect = 3.700e-27
Identity = 77/116 (66.38%), Postives = 94/116 (81.03%), Query Frame = 0 
Query:    1 MPTPLELMIPSTTSPESSPTHAKSQLKPQLSREPSRAAVARMQAIEMEGYLDVFFTYMECIGRLLKRLVSYAISIMTFLYTSIVIRLGLVLVSAIVIYYYVLLGLGKISGVNDPKL 117
            MPTPLEL IPSTTSPE SPT +K+ L+PQL  +PSRAAVARM A+E+EG L+  FTY EC  R+LKRLVSY +SI  F++TS+VIRLGL++V+ + +YY  LL LGKISGV DPKL
Sbjct:    1 MPTPLEL-IPSTTSPEPSPT-SKASLQPQL-YQPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLSLGKISGVKDPKL 113
The following BLAST results are available for this feature:
BLAST of NO01G05340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22757.14.500e-3364.12hypothetical protein Naga_100516g2 [Nannochloropsi... [more]
EWM22758.13.700e-2766.38hypothetical protein Naga_100516g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL000nonsL000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|245246gene_567Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05340.1NO01G05340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05340.2NO01G05340.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05340.3NO01G05340.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05340.4NO01G05340.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05340.5NO01G05340.5Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05340.1NO01G05340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05340.2NO01G05340.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05340.3NO01G05340.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05340.4NO01G05340.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05340.5NO01G05340.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05340 ID=NO01G05340|Name=NO01G05340|organism=Nannochloropsis oceanica|type=gene|length=1612bp
GCCAAGATAGCCTTGAGCCATCATGATTGCTTGTTTGACCCGTGTTGGGG
ACGAGTCTATCCCTAGTCTACGCTCTAATCAGTGGATCTCTCCCCAATCC
CAAAAGCTAGACTAGACAGGAATCGGCTCAACTCATTATTACGCAACAAA
CCTTGTAAGCCATGCCGACGCCCTTGGAGTTGATGATTCCGTCAACCACA
AGCCCTGAAAGCAGCCCCACCCACGCCAAGTCACAATTGAAGCCCCAACT
ATCACGGGAACCCTCCCGTGCAGCAGTGGCCCGCATGCAAGCCATAGAGA
TGGAAGGGTACCTCGACGTTTTTTTCACTTACATGGAATGCATAGGCCGC
CTATTGAAGCGCTTGGTCTCTTATGCCATCAGCATTATGACATTTCTTTA
CACCAGTATTGTTATTCGCTTAGGCTTGGTGTTGGTTTCAGCCATCGTCA
TTTATTACTACGTATTGGTAAGTGATCACAAGAGAGAAATGGAGTCAGAG
GTGGACTGGAAAGATAAAAGATGCACACTCGTACAAAACATCATTCAATC
ACAGTTGGGCCTTGGCAAGATTTCCGGCGTAAATGACCCTAAGCTGCACG
GTATGTCGAGAGGGAGAGGGGTCAGAGGGAAGGTAAAGAAGGGCAGGGGG
GAGAGATACCAAGAGTGAAAGAGTGGTTGTTGAATGCTTATGATGCATGT
TAAAGATTGAGGATGGGAAGAATGATGGTAGAGTTGGTGCGTGTATCTCA
TTTAGATCCATGATAACCCACAACCACCATCCCCCCATCATCGCCACCCC
ACAGAGTACTTCTCGGCCAACTTCTTCAAGCAATTTTGGAGTTGGAGGTG
AACAAGGAAGTTGTCTACAGCTCGATAATTGTACATAAATTTAGCAGATT
CGGACTCAATAAGATTGGATAAGCCAACTCACTAAAGGAGAAGGGAGGGC
CGATGAAATTTACTGAAACAAATTATACATAAGGCTCAGgtaaaccttcc
ctgctttgttgttgtttaattatctcgcccatgtatcttatcttttttgt
cttcatctctattgtttcattcttcagTGTATTTTTTGGGTCATTAGAAA
CGTAGGTAGGAGGAGGGGCTCCAAACATTGCCTGTATCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCATTTCTTCTTC
TTCGAGCTTTCCCCTTTTTTCCTCCTACATCAAAATTTTCATCTATCTCC
CCGTATTTCCTATTCCCTTCTCTCCTCCCTCCCGAGGACTTGTCTGGTGA
AAAACCTGCCAAAGCCATATAAAACTCGGCCAAAATAAGGGAAGAATATC
AAACGATTTATCGTTGGAGGGTTTTCCTTCGTGTTGTAATCCTGAGAGGA
GGCACGCTTGTGCAAACGCTTGTGTTTGTATTTGTGTGCGGATAGGTGGC
ACGCGATAATTCTAGGATTGTGGGGAACTACAGGAAAAGAAAAGAAAAAA
AAGTCACCCAGTCCACTTCAACGTGTGCTCGCCCTTGCCAGAAATACTCA
CTCCGCGATCGATGACGAAAATCGTCAACGCCCATGCCTTGCCTTTTGTC
CCTGCCACATTG
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protein sequence of NO01G05340.1

>NO01G05340.1-protein ID=NO01G05340.1-protein|Name=NO01G05340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MPTPLELMIPSTTSPESSPTHAKSQLKPQLSREPSRAAVARMQAIEMEGY
LDVFFTYMECIGRLLKRLVSYAISIMTFLYTSIVIRLGLVLVSAIVIYYY
VLLGLGKISGVNDPKLHEYFSANFFKQFWSWR*
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protein sequence of NO01G05340.2

>NO01G05340.2-protein ID=NO01G05340.2-protein|Name=NO01G05340.2|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MPTPLELMIPSTTSPESSPTHAKSQLKPQLSREPSRAAVARMQAIEMEGY
LDVFFTYMECIGRLLKRLVSYAISIMTFLYTSIVIRLGLVLVSAIVIYYY
VLLGLGKISGVNDPKLHEYFSANFFKQFWSWR*
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protein sequence of NO01G05340.3

>NO01G05340.3-protein ID=NO01G05340.3-protein|Name=NO01G05340.3|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MPTPLELMIPSTTSPESSPTHAKSQLKPQLSREPSRAAVARMQAIEMEGY
LDVFFTYMECIGRLLKRLVSYAISIMTFLYTSIVIRLGLVLVSAIVIYYY
VLVSDHKREMESEVDWKDKRCTLVQNIIQSQLGLGKISGVNDPKLHEYFS
ANFFKQFWSWR*
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protein sequence of NO01G05340.4

>NO01G05340.4-protein ID=NO01G05340.4-protein|Name=NO01G05340.4|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MPTPLELMIPSTTSPESSPTHAKSQLKPQLSREPSRAAVARMQAIEMEGY
LDVFFTYMECIGRLLKRLVSYAISIMTFLYTSIVIRLGLVLVSAIVIYYY
VLVSDHKREMESEVDWKDKRCTLVQNIIQSQLGLGKISGVNDPKLHGMSR
GRGVRGKVKKGRGERYQE*
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protein sequence of NO01G05340.5

>NO01G05340.5-protein ID=NO01G05340.5-protein|Name=NO01G05340.5|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MPTPLELMIPSTTSPESSPTHAKSQLKPQLSREPSRAAVARMQAIEMEGY
LDVFFTYMECIGRLLKRLVSYAISIMTFLYTSIVIRLGLVLVSAIVIYYY
VLVSDHKREMESEVDWKDKRCTLVQNIIQSQLGLGKISGVNDPKLHGMSR
GRGVRGKVKKGRGERYQE*
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Synonyms
Publications