NO01G05340.3, NO01G05340.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05340.3
Unique NameNO01G05340.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1408
Alignment locationchr1:1425067..1426678 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1425067..1426678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05340.3 vs.
Match: EWM22757.1 (hypothetical protein Naga_100516g2 [Nannochloropsis gaditana])

HSP 1 Score: 136.0 bits (341), Expect = 1.100e-28
Identity = 84/160 (52.50%), Postives = 105/160 (65.62%), Query Frame = 0 
Query:    1 MPTPLELMIPSTTSPESSPTHAKSQLKPQLSREPSRAAVARMQAIEMEGYLDVFFTYMECIGRLLKRLVSYAISIMTFLYTSIVIRLGLVLVSAIVIYYYVLVSDHKREMESEVDWKDKRCTLVQNIIQSQLGLGKISGVNDPKLHEYFSANFFKQFWSW 161
            MPTPLEL IPSTTSPE SPT +K+ L+PQL  +PSRAAVARM A+E+EG L+  FTY EC  R+LKRLVSY +SI  F++TS+VIRLGL++V+ + +YY  L+S                             LGKISGV DPKL +YFS + FK +W W
Sbjct:    1 MPTPLEL-IPSTTSPEPSPT-SKASLQPQLY-QPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLS-----------------------------LGKISGVKDPKLQDYFSYSSFKNYWGW 128
The following BLAST results are available for this feature:
BLAST of NO01G05340.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22757.11.100e-2852.50hypothetical protein Naga_100516g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05340NO01G05340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05340.3NO01G05340.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05340.3.cds1NO01G05340.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05340.3.cds2NO01G05340.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05340.3 ID=NO01G05340.3|Name=NO01G05340.3|organism=Nannochloropsis oceanica|type=mRNA|length=1408bp
GCCAAGATAGCCTTGAGCCATCATGATTGCTTGTTTGACCCGTGTTGGGG
ACGAGTCTATCCCTAGTCTACGCTCTAATCAGTGGATCTCTCCCCAATCC
CAAAAGCTAGACTAGACAGGAATCGGCTCAACTCATTATTACGCAACAAA
CCTTGTAAGCCATGCCGACGCCCTTGGAGTTGATGATTCCGTCAACCACA
AGCCCTGAAAGCAGCCCCACCCACGCCAAGTCACAATTGAAGCCCCAACT
ATCACGGGAACCCTCCCGTGCAGCAGTGGCCCGCATGCAAGCCATAGAGA
TGGAAGGGTACCTCGACGTTTTTTTCACTTACATGGAATGCATAGGCCGC
CTATTGAAGCGCTTGGTCTCTTATGCCATCAGCATTATGACATTTCTTTA
CACCAGTATTGTTATTCGCTTAGGCTTGGTGTTGGTTTCAGCCATCGTCA
TTTATTACTACGTATTGGTAAGTGATCACAAGAGAGAAATGGAGTCAGAG
GTGGACTGGAAAGATAAAAGATGCACACTCGTACAAAACATCATTCAATC
ACAGTTGGGCCTTGGCAAGATTTCCGGCGTAAATGACCCTAAGCTGCACG
AGTACTTCTCGGCCAACTTCTTCAAGCAATTTTGGAGTTGGAGGTGAACA
AGGAAGTTGTCTACAGCTCGATAATTGTACATAAATTTAGCAGATTCGGA
CTCAATAAGATTGGATAAGCCAACTCACTAAAGGAGAAGGGAGGGCCGAT
GAAATTTACTGAAACAAATTATACATAAGGCTCAGGTAAACCTTCCCTGC
TTTGTTGTTGTTTAATTATCTCGCCCATGTATCTTATCTTTTTTGTCTTC
ATCTCTATTGTTTCATTCTTCAGTGTATTTTTTGGGTCATTAGAAACGTA
GGTAGGAGGAGGGGCTCCAAACATTGCCTGTATCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCATTTCTTCTTCTTCG
AGCTTTCCCCTTTTTTCCTCCTACATCAAAATTTTCATCTATCTCCCCGT
ATTTCCTATTCCCTTCTCTCCTCCCTCCCGAGGACTTGTCTGGTGAAAAA
CCTGCCAAAGCCATATAAAACTCGGCCAAAATAAGGGAAGAATATCAAAC
GATTTATCGTTGGAGGGTTTTCCTTCGTGTTGTAATCCTGAGAGGAGGCA
CGCTTGTGCAAACGCTTGTGTTTGTATTTGTGTGCGGATAGGTGGCACGC
GATAATTCTAGGATTGTGGGGAACTACAGGAAAAGAAAAGAAAAAAAAGT
CACCCAGTCCACTTCAACGTGTGCTCGCCCTTGCCAGAAATACTCACTCC
GCGATCGATGACGAAAATCGTCAACGCCCATGCCTTGCCTTTTGTCCCTG
CCACATTG
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protein sequence of NO01G05340.3

>NO01G05340.3-protein ID=NO01G05340.3-protein|Name=NO01G05340.3|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MPTPLELMIPSTTSPESSPTHAKSQLKPQLSREPSRAAVARMQAIEMEGY
LDVFFTYMECIGRLLKRLVSYAISIMTFLYTSIVIRLGLVLVSAIVIYYY
VLVSDHKREMESEVDWKDKRCTLVQNIIQSQLGLGKISGVNDPKLHEYFS
ANFFKQFWSWR*
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mRNA from alignment at chr1:1425067..1426678+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05340.3 ID=NO01G05340.3|Name=NO01G05340.3|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp|location=Sequence derived from alignment at chr1:1425067..1426678+ (Nannochloropsis oceanica)
GCCAAGATAGCCTTGAGCCATCATGATTGCTTGTTTGACCCGTGTTGGGG
ACGAGTCTATCCCTAGTCTACGCTCTAATCAGTGGATCTCTCCCCAATCC
CAAAAGCTAGACTAGACAGGAATCGGCTCAACTCATTATTACGCAACAAA
CCTTGTAAGCCATGCCGACGCCCTTGGAGTTGATGATTCCGTCAACCACA
AGCCCTGAAAGCAGCCCCACCCACGCCAAGTCACAATTGAAGCCCCAACT
ATCACGGGAACCCTCCCGTGCAGCAGTGGCCCGCATGCAAGCCATAGAGA
TGGAAGGGTACCTCGACGTTTTTTTCACTTACATGGAATGCATAGGCCGC
CTATTGAAGCGCTTGGTCTCTTATGCCATCAGCATTATGACATTTCTTTA
CACCAGTATTGTTATTCGCTTAGGCTTGGTGTTGGTTTCAGCCATCGTCA
TTTATTACTACGTATTGGTAAGTGATCACAAGAGAGAAATGGAGTCAGAG
GTGGACTGGAAAGATAAAAGATGCACACTCGTACAAAACATCATTCAATC
ACAGTTGGGCCTTGGCAAGATTTCCGGCGTAAATGACCCTAAGCTGCACG
GTATGTCGAGAGGGAGAGGGGTCAGAGGGAAGGTAAAGAAGGGCAGGGGG
GAGAGATACCAAGAGTGAAAGAGTGGTTGTTGAATGCTTATGATGCATGT
TAAAGATTGAGGATGGGAAGAATGATGGTAGAGTTGGTGCGTGTATCTCA
TTTAGATCCATGATAACCCACAACCACCATCCCCCCATCATCGCCACCCC
ACAGAGTACTTCTCGGCCAACTTCTTCAAGCAATTTTGGAGTTGGAGGTG
AACAAGGAAGTTGTCTACAGCTCGATAATTGTACATAAATTTAGCAGATT
CGGACTCAATAAGATTGGATAAGCCAACTCACTAAAGGAGAAGGGAGGGC
CGATGAAATTTACTGAAACAAATTATACATAAGGCTCAGGTAAACCTTCC
CTGCTTTGTTGTTGTTTAATTATCTCGCCCATGTATCTTATCTTTTTTGT
CTTCATCTCTATTGTTTCATTCTTCAGTGTATTTTTTGGGTCATTAGAAA
CGTAGGTAGGAGGAGGGGCTCCAAACATTGCCTGTATCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCATTTCTTCTTC
TTCGAGCTTTCCCCTTTTTTCCTCCTACATCAAAATTTTCATCTATCTCC
CCGTATTTCCTATTCCCTTCTCTCCTCCCTCCCGAGGACTTGTCTGGTGA
AAAACCTGCCAAAGCCATATAAAACTCGGCCAAAATAAGGGAAGAATATC
AAACGATTTATCGTTGGAGGGTTTTCCTTCGTGTTGTAATCCTGAGAGGA
GGCACGCTTGTGCAAACGCTTGTGTTTGTATTTGTGTGCGGATAGGTGGC
ACGCGATAATTCTAGGATTGTGGGGAACTACAGGAAAAGAAAAGAAAAAA
AAGTCACCCAGTCCACTTCAACGTGTGCTCGCCCTTGCCAGAAATACTCA
CTCCGCGATCGATGACGAAAATCGTCAACGCCCATGCCTTGCCTTTTGTC
CCTGCCACATTG
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Coding sequence (CDS) from alignment at chr1:1425067..1426678+

>NO01G05340.3 ID=NO01G05340.3|Name=NO01G05340.3|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at chr1:1425067..1426678+ (Nannochloropsis oceanica)
ATGCCGACGCCCTTGGAGTTGATGATTCCGTCAACCACAAGCCCTGAAAG
CAGCCCCACCCACGCCAAGTCACAATTGAAGCCCCAACTATCACGGGAAC
CCTCCCGTGCAGCAGTGGCCCGCATGCAAGCCATAGAGATGGAAGGGTAC
CTCGACGTTTTTTTCACTTACATGGAATGCATAGGCCGCCTATTGAAGCG
CTTGGTCTCTTATGCCATCAGCATTATGACATTTCTTTACACCAGTATTG
TTATTCGCTTAGGCTTGGTGTTGGTTTCAGCCATCGTCATTTATTACTAC
GTATTGGTAAGTGATCACAAGAGAGAAATGGAGTCAGAGGTGGACTGGAA
AGATAAAAGATGCACACTCGTACAAAACATCATTCAATCACAGTTGGGCC
TTGGCAAGATTTCCGGCGTAAATGACCCTAAGCTGCACGAGTACTTCTCG
GCCAACTTCTTCAAGCAATTTTGGAGTTGGAGGTGA
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Synonyms
Publications