NO01G05280, NO01G05280 (gene) Nannochloropsis oceanica

Overview
NameNO01G05280
Unique NameNO01G05280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3324
Alignment locationchr1:1408445..1411768 -

Link to JBrowse

Properties
Property NameValue
DescriptionPoly-binding protein 4 isoform c
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1408445..1411768 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1
IPR004087KH_dom
Homology
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BLAST of NO01G05280 vs. NCBI_GenBank
Match: EWM22755.1 (poly -binding protein 4 isoform c [Nannochloropsis gaditana])

HSP 1 Score: 164.1 bits (414), Expect = 1.100e-36
Identity = 116/313 (37.06%), Postives = 169/313 (53.99%), Query Frame = 0 
Query:    2 ETAPQNQQRDRKHIHHVTQEFSSIDEGCQDDHDCDSSDLS------SQPNDSLS-HYEGEPSLSTCSLRPGLYQHTGQAPHQLPLVDTYARLLLPSTRMGIIIGRRGEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVCWAVDLLAQKAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEATSPTSASRVRKSSPSGEDGIIAAS------SHEKFELSP-PGIKMVIDSSKAGLLLGKGGVIISKIRSKSKARVLLLDQSLSAKEGAIANERILIIIGKPDYCRRAHQLIIAALS 301
            +  P   Q  + H  H TQ+   + E  QD  DC S +LS        P +S S H   +  +  C           +AP+++      +RLL+P +R+G+ IGR+G  IR +   TGA +++       RD A+R++VV GS  +VCWAVDLLAQK GLF GYSNI    K   + K +  TP   +         +  P     +   SP+ E+ I  A+        +  ++ P PGI++++ SS AG LLG+ G  IS IRS+S AR++LL++  SA EG I  ER+L+I+G PDYCRRAH L++ AL+
Sbjct:   14 DNPPACLQSQKGHARHFTQDICMV-EDFQDGQDCRSVNLSDALVDDDSPKESYSTHAPSKKPVDDC-------HQIRRAPYKVTPGVICSRLLIPQSRVGLAIGRKGGRIREMSATTGARINVCIQNGIGRDEAYRLIVVTGSITAVCWAVDLLAQKTGLFNGYSNILSRPKEILNHK-MGRTPVMDA--------NSLIPEGKDGIGNPSPAEENIIDGATELKNNGDRKSDQIVPLPGIRLLVHSSMAGALLGRAGSTISFIRSQSNARIVLLNEEESAMEGGIVGERVLLIVGIPDYCRRAHLLVLGALN 309
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BLAST of NO01G05280 vs. NCBI_GenBank
Match: EWM23629.1 (poly -binding protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 121.7 bits (304), Expect = 6.000e-24
Identity = 85/260 (32.69%), Postives = 131/260 (50.38%), Query Frame = 0 
Query:   80 VDTYARLLLPSTRMGIIIGRRGEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVCWAVDLLAQKAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEATSPTSASRVRKSSPSGEDGIIAASSHEKFELSPPGIKMVIDSSKAGLLLGKGGVIISKIRSKSKARVLLLDQSLSAKEGAIANERILIIIGKPDYCRRAHQLIIAALSASPLTPEDVLHHQQGGSKSWNHPQEPQFIHQQPSASQAT 340
            ++T   LLLP++R+G +IGR G+ I+ I ++TG  + I+    + RD A R+V V GS   VC AV+L++++AGLFE                                               S   GEDG          +  PPG+++VIDSS AG ++GK G  I++IR++S+AR+ +L    SA+EGA++ ER++++IG+ + CR AH++I + L+                S S N P   Q   QQPS  QA+
Sbjct:  202 LETTTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFE-----------------------------------------------SQQGGEDG---------EDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEACRLAHKMICSLLA------------NAYASASSNSPSGHQ---QQPSVQQAS 390
The following BLAST results are available for this feature:
BLAST of NO01G05280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22755.11.100e-3637.06poly -binding protein 4 isoform c [Nannochloropsis... [more]
EWM23629.16.000e-2432.69poly -binding protein 3 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL000nonsL000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006287NSK006287Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100143g5gene7694Nannochloropsis gaditana (N. gaditana B-31)gene
jgi.p|Nanoce1779_2|577706gene_561Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05280.5NO01G05280.5Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05280.4NO01G05280.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05280.3NO01G05280.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05280.2NO01G05280.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05280.1NO01G05280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05280.5NO01G05280.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05280.4NO01G05280.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05280.3NO01G05280.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05280.2NO01G05280.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05280.1NO01G05280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05280 ID=NO01G05280|Name=NO01G05280|organism=Nannochloropsis oceanica|type=gene|length=3324bp
CCACAACTAACTGCCAGAGCCGTTAATGGGAGAGAACTCTGACCCCGAGT
GGGATGCACGCACAGGGGTGTTAGATAGATACGATCTCCTCGACGTACAT
GATCTCAAGGTCTAGCCCATTCCTGTCACCTTGCCTCGCAAGACAAGATC
TTGGTCTTCTTGTCGAGCCTTGTGCCGGTGTGTGAATTCATCACGTCTAC
TACCCCCTCCAAGTCACAGCCCTCTGGTCACTAACAGCATTCCGTTTCCA
AATACTGCCCTGTCTCGATTACCAAAGCGCCGCTCCTCTTGCATCTTCAT
GTCTACTAGCACGCTGGTCGGCTCACAGCCCTGCCTCGCGTAAGCCTGAA
GCGGCCATACAGAGACACCCACTAAGCCTAGGTGGCATTCGAGCCCAGAG
GTGCTCGAGGTATACAAAGCGAAATATATTGAGCCTTGATGCAGAGAATA
TCACAGCACAGCCAAACCTATCCCCTGCTGACAACACAGATGTATACGTC
TGGACGAGAATCCCCAGTGACTATAGCACAAACGACTCACCTCTCTTTCT
ACCAACATATTGCCTCCTGCATAGACACAGAAGACACTGGTTCTGCACCT
AGAAAGGATCGGCTGGCTTAAAAACGCCTTGATTGTGATGCCACAAAATT
ATATTGCTGTTAAATGAGAGCTTATATCCCTCCCCCGTAGAAGTAGCCTT
AGTACTAGGTTTTTCAAATCGAAAAAAGCAGCCGTTTCCTGATAAGATGG
AGACTGCACCGCAAAATCAGCAACGAGACCGAAAGCATATCCATCATGTC
ACCCAAGAATTCTCCAGCATCGATGAAGGCTGCCAAGATGACCACGATTG
TGACTCGTCCGACTTATCATCGCAACCCAACGACTCTTTGTCCCACTACG
AGGGgtaagtgaagcaacccaaatttttgaaggcatggtcaaacgaccct
gcatcttggccttggagcaaaaatcagcttgtcctcaccgatcttgtact
ctcacacactcacacactacagTGAGCCCAGCTTGTCAACTTGCTCTTTG
CGTCCTGGTCTGTACCAGCACACTGGGCAAGgtacgttttgcataagtgc
tttccaaaggctatccttgcaacgtgcacccaactctctgcatcaacatc
tcatcattgttcccttgtgataatcccacaatgcctgtgtagCGCCTCAT
CAACTCCCACTCGTGGACACTTACGCCCGTTTACTGCTGCCCAGCACCCG
AATGGGTATAATAATTGGTCGTAGGGGGGAAGCGATTCGCAGTATTTGCG
ATATTACAGGGGCACACGTGAGCATTGCTTCCCTCGAGCATAACAAGCGC
GATTCCGCGCATCGCATGgtacgtcctactcttcggtcctttgtccatgc
agcatcgacagtcgattgaaactcatcatgcatatttctccttttcattt
acgcacagGTTGTTGTCATGGGCTCCGCAATGTCCGTCTGCTGGGCTGTG
GACTTGCTTGCCCAAAAAGCAGGCCTTTTTGAAGGCTATAGCAACATCCA
CCCCCACCATAAAAGgtgagatgagcactcaaagattaggaatgaggcaa
ttttggcccaagctatatcccatctcattccttaccgcacagTCGAAAGC
ACTTAAAAACGCTCGTTAGTACTCCTACGTCCTCCTCAGTTCCCACCCGT
ATTGACTTAAAAGAAGCAACTAGCCCCACTAGCGCCTCCAGAGTACGTAA
ATCCAGCCCTTCGGGTGAGGATGGAATCATCGCTGCCTCCTCGCACGAGA
AGTTTGAGCTATCCCCTCCGGGTATCAAGATGGTGATCGACTCCTCCAAG
gtatttctcacaaaatcatttctcaaaaacatgtcctggcattcgtctct
tttcacgtactatataacgtctaactttatcaagtgcccttgtgcaacgc
gattttccaagctcactcattcatattttcccttccgcttataccttctc
tcccgccccgtcccccttctttctgtttatgacttcaatgcagGCGGGCT
TGCTATTAGGGAAAGGAGGCGTTATTATAAGTAAAATTCGCTCAAAATCC
AAAGCACGGGTCTTGCTTCTGGATCAGAGCTTAAGCGCCAAGGAAGGAGC
TGTAAGTCACGAGGGACATAAAATCACAAAGCACAAGCATAAAATATTCG
ATCAATACCATCTTTCAATCTGACATTCAACCGCCTATTCTCGTATTTAC
AGATTGCGAACGAGCGTATACTTATTATAATTGGCAAGCCTGATTATTGC
CGACGTGCCCATCAGCTCATTATCGCTGCTTTGAGTGCCAGTCCTCTGAC
GCCTGAGGATGTACTACATCATCAACAAGGGGGATCTAAATCTTGGAATC
ATCCGCAAGAGCCACAATTTATCCATCAACAACCATCCGCCTCCCAGGCT
ACCTTCAGTGACGATCATCAGTATCAACTAGCGGCGGCTCCGTACTTTTC
TGTGGCCAACCATTTATTGTGCTACCCCTCAAGCGAGCACATGAATATGG
TACGTATGATTTTGGGGCGGATCCATCCACACACGCTTATAACCAGCAAG
GAGATGGACTCAATCTTTATAAATTTACGATCAGTGATGCACTCACACAA
CAACTTCACCTGACCAAATAAACAGACCACTCTGAGTCAATCCATGTCAC
ACCTTTGTATGACCGACGACGGCCCCTACATTTTGTCTCCCTATGCCACC
GTACCTCTCCTCCCCAACAACCATCCATCACCGCAAGTGTATTACCTGGC
TCAAACTTTGGCGCCTTCCAATTTCCAGATCCATCAGCAACAGAAGACGG
TACAAAAGAAGCAACAGGAGCAACAGCTTCACCCGAAACATCAGCAGGAA
GACTCGAAGGCTGAGGTGCAGAATATCCAGGCATCGATACCAGGCACCGA
GGAGCAGAAGGTGTAGGACTTCGGACGGCATGTCATCATATATATCCAAC
TCTGTAACATATGACGCGCAAAACCACTGCTCACAGGACTGTGAAAGTAC
ATTCTCTCTGTTCTCATCCTCCTCGAAAGTAACATTTTCCAATCAGAGCA
ATGTGTCACCCCGGTCTATATCCGAGGACTTAATAGCTAATGATAGTAAA
TTCAAAAGTTCACGAAGAATTTCTGAGAATGGGAATCATCTGAGCATTCA
AAGGAATAAAAAGAGGCCAATGGCAACAGATCAAATGACCGCACATCTAA
GCTTCTCTTGGGTGCGCATGAGAGAAAAAGGAAGAGATAGATATTTCAAA
ACTTAAGAGCCATCATATTCGGGC
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protein sequence of NO01G05280.5

>NO01G05280.5-protein ID=NO01G05280.5-protein|Name=NO01G05280.5|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MGIIIGRRGEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVC
WAVDLLAQKAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEA
TSPTSASRVRKSSPSGEDGIIAASSHEKFELSPPGIKMVIDSSKAGLLLG
KGGVIISKIRSKSKARVLLLDQSLSAKEGAIANERILIIIGKPDYCRRAH
QLIIAALSASPLTPEDVLHHQQGGSKSWNHPQEPQFIHQQPSASQATFSD
DHQYQLAAAPYFSVANHLLCYPSSEHMNMTTLSQSMSHLCMTDDGPYILS
PYATVPLLPNNHPSPQVYYLAQTLAPSNFQIHQQQKTVQKKQQEQQLHPK
HQQEDSKAEVQNIQASIPGTEEQKV*
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protein sequence of NO01G05280.4

>NO01G05280.4-protein ID=NO01G05280.4-protein|Name=NO01G05280.4|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
METAPQNQQRDRKHIHHVTQEFSSIDEGCQDDHDCDSSDLSSQPNDSLSH
YEGEPSLSTCSLRPGLYQHTGQAPHQLPLVDTYARLLLPSTRMGIIIGRR
GEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVCWAVDLLAQ
KAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEATSPTSASR
VRKSSPSGEDGIIAASSHEKFELSPPGIKMVIDSSKAGLLLGKGGVIISK
IRSKSKARVLLLDQSLSAKEGAVSHEGHKITKHKHKIFDQYHLSI*
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protein sequence of NO01G05280.3

>NO01G05280.3-protein ID=NO01G05280.3-protein|Name=NO01G05280.3|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
METAPQNQQRDRKHIHHVTQEFSSIDEGCQDDHDCDSSDLSSQPNDSLSH
YEGEPSLSTCSLRPGLYQHTGQAPHQLPLVDTYARLLLPSTRMGIIIGRR
GEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVCWAVDLLAQ
KAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEATSPTSASR
VRKSSPSGEDGIIAASSHEKFELSPPGIKMVIDSSKAGLLLGKGGVIISK
IRSKSKARVLLLDQSLSAKEGAVSHEGHKITKHKHKIFDQYHLSI*
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protein sequence of NO01G05280.2

>NO01G05280.2-protein ID=NO01G05280.2-protein|Name=NO01G05280.2|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
METAPQNQQRDRKHIHHVTQEFSSIDEGCQDDHDCDSSDLSSQPNDSLSH
YEGEPSLSTCSLRPGLYQHTGQAPHQLPLVDTYARLLLPSTRMGIIIGRR
GEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVCWAVDLLAQ
KAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEATSPTSASR
VRKSSPSGEDGIIAASSHEKFELSPPGIKMVIDSSKAGLLLGKGGVIISK
IRSKSKARVLLLDQSLSAKEGAIANERILIIIGKPDYCRRAHQLIIAALS
ASPLTPEDVLHHQQGGSKSWNHPQEPQFIHQQPSASQATFSDDHQYQLAA
APYFSVANHLLCYPSSEHMNMTTLSQSMSHLCMTDDGPYILSPYATVPLL
PNNHPSPQVYYLAQTLAPSNFQIHQQQKTVQKKQQEQQLHPKHQQEDSKA
EVQNIQASIPGTEEQKV*
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protein sequence of NO01G05280.1

>NO01G05280.1-protein ID=NO01G05280.1-protein|Name=NO01G05280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
METAPQNQQRDRKHIHHVTQEFSSIDEGCQDDHDCDSSDLSSQPNDSLSH
YEGEPSLSTCSLRPGLYQHTGQAPHQLPLVDTYARLLLPSTRMGIIIGRR
GEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVCWAVDLLAQ
KAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEATSPTSASR
VRKSSPSGEDGIIAASSHEKFELSPPGIKMVIDSSKAGLLLGKGGVIISK
IRSKSKARVLLLDQSLSAKEGAIANERILIIIGKPDYCRRAHQLIIAALS
ASPLTPEDVLHHQQGGSKSWNHPQEPQFIHQQPSASQATFSDDHQYQLAA
APYFSVANHLLCYPSSEHMNMTTLSQSMSHLCMTDDGPYILSPYATVPLL
PNNHPSPQVYYLAQTLAPSNFQIHQQQKTVQKKQQEQQLHPKHQQEDSKA
EVQNIQASIPGTEEQKV*
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Synonyms
Publications