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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1408445..1411768 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05280.3 vs.
Match: EWM22755.1 (poly -binding protein 4 isoform c [Nannochloropsis gaditana]) HSP 1 Score: 126.3 bits (316), Expect = 1.500e-25 Identity = 99/289 (34.26%), Postives = 149/289 (51.56%), Query Frame = 0
Query: 2 ETAPQNQQRDRKHIHHVTQEFSSIDEGCQDDHDCDSSDLSS------QPNDSLS-HYEGEPSLSTCSLRPGLYQHTGQAPHQLPLVDTYARLLLPSTRMGIIIGRRGEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVCWAVDLLAQKAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEATSPTSASRVRKSSPSGEDGIIAAS------SHEKFELSP-PGIKMVIDSSKAGLLLGKGGVIISKIRSKSKARVLLLDQSLSAKEGAVSHE 277
+ P Q + H H TQ+ +++ QD DC S +LS P +S S H + + C +AP+++ +RLL+P +R+G+ IGR+G IR + TGA +++ RD A+R++VV GS +VCWAVDLLAQK GLF GYSNI K + K + TP + + P + SP+ E+ I A+ + ++ P PGI++++ SS AG LLG+ G IS IRS+S AR++LL++ SA EG + E
Sbjct: 14 DNPPACLQSQKGHARHFTQDICMVED-FQDGQDCRSVNLSDALVDDDSPKESYSTHAPSKKPVDDC-------HQIRRAPYKVTPGVICSRLLIPQSRVGLAIGRKGGRIREMSATTGARINVCIQNGIGRDEAYRLIVVTGSITAVCWAVDLLAQKTGLFNGYSNILSRPKEILNHK-MGRTPVMDA--------NSLIPEGKDGIGNPSPAEENIIDGATELKNNGDRKSDQIVPLPGIRLLVHSSMAGALLGRAGSTISFIRSQSNARIVLLNEEESAMEGGIVGE 285
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05280.3 ID=NO01G05280.3|Name=NO01G05280.3|organism=Nannochloropsis oceanica|type=mRNA|length=2570bp CCACAACTAACTGCCAGAGCCGTTAATGGGAGAGAACTCTGACCCCGAGT GGGATGCACGCACAGGGGTGTTAGATAGATACGATCTCCTCGACGTACAT GATCTCAAGGTCTAGCCCATTCCTGTCACCTTGCCTCGCAAGACAAGATC TTGGTCTTCTTGTCGAGCCTTGTGCCGGTGTGTGAATTCATCACGTCTAC TACCCCCTCCAAGTCACAGCCCTCTGGTCACTAACAGCATTCCGTTTCCA AATACTGCCCTGTCTCGATTACCAAAGCGCCGCTCCTCTTGCATCTTCAT GTCTACTAGCACGCTGGTCGGCTCACAGCCCTGCCTCGCGTAAGCCTGAA GCGGCCATACAGAGACACCCACTAAGCCTAGGTGGCATTCGAGCCCAGAG GTGCTCGAGACACAGAAGACACTGGTTCTGCACCTAGAAAGGATCGGCTG GCTTAAAAACGCCTTGATTGTGATGCCACAAAATTATATTGCTGTTAAAT GAGAGCTTATATCCCTCCCCCGTAGAAGTAGCCTTAGTACTAGGTTTTTC AAATCGAAAAAAGCAGCCGTTTCCTGATAAGATGGAGACTGCACCGCAAA ATCAGCAACGAGACCGAAAGCATATCCATCATGTCACCCAAGAATTCTCC AGCATCGATGAAGGCTGCCAAGATGACCACGATTGTGACTCGTCCGACTT ATCATCGCAACCCAACGACTCTTTGTCCCACTACGAGGGTGAGCCCAGCT TGTCAACTTGCTCTTTGCGTCCTGGTCTGTACCAGCACACTGGGCAAGCG CCTCATCAACTCCCACTCGTGGACACTTACGCCCGTTTACTGCTGCCCAG CACCCGAATGGGTATAATAATTGGTCGTAGGGGGGAAGCGATTCGCAGTA TTTGCGATATTACAGGGGCACACGTGAGCATTGCTTCCCTCGAGCATAAC AAGCGCGATTCCGCGCATCGCATGGTTGTTGTCATGGGCTCCGCAATGTC CGTCTGCTGGGCTGTGGACTTGCTTGCCCAAAAAGCAGGCCTTTTTGAAG GCTATAGCAACATCCACCCCCACCATAAAAGTCGAAAGCACTTAAAAACG CTCGTTAGTACTCCTACGTCCTCCTCAGTTCCCACCCGTATTGACTTAAA AGAAGCAACTAGCCCCACTAGCGCCTCCAGAGTACGTAAATCCAGCCCTT CGGGTGAGGATGGAATCATCGCTGCCTCCTCGCACGAGAAGTTTGAGCTA TCCCCTCCGGGTATCAAGATGGTGATCGACTCCTCCAAGGCGGGCTTGCT ATTAGGGAAAGGAGGCGTTATTATAAGTAAAATTCGCTCAAAATCCAAAG CACGGGTCTTGCTTCTGGATCAGAGCTTAAGCGCCAAGGAAGGAGCTGTA AGTCACGAGGGACATAAAATCACAAAGCACAAGCATAAAATATTCGATCA ATACCATCTTTCAATCTGACATTCAACCGCCTATTCTCGTATTTACAGAT TGCGAACGAGCGTATACTTATTATAATTGGCAAGCCTGATTATTGCCGAC GTGCCCATCAGCTCATTATCGCTGCTTTGAGTGCCAGTCCTCTGACGCCT GAGGATGTACTACATCATCAACAAGGGGGATCTAAATCTTGGAATCATCC GCAAGAGCCACAATTTATCCATCAACAACCATCCGCCTCCCAGGCTACCT TCAGTGACGATCATCAGTATCAACTAGCGGCGGCTCCGTACTTTTCTGTG GCCAACCATTTATTGTGCTACCCCTCAAGCGAGCACATGAATATGGTACG TATGATTTTGGGGCGGATCCATCCACACACGCTTATAACCAGCAAGGAGA TGGACTCAATCTTTATAAATTTACGATCAGTGATGCACTCACACAACAAC TTCACCTGACCAAATAAACAGACCACTCTGAGTCAATCCATGTCACACCT TTGTATGACCGACGACGGCCCCTACATTTTGTCTCCCTATGCCACCGTAC CTCTCCTCCCCAACAACCATCCATCACCGCAAGTGTATTACCTGGCTCAA ACTTTGGCGCCTTCCAATTTCCAGATCCATCAGCAACAGAAGACGGTACA AAAGAAGCAACAGGAGCAACAGCTTCACCCGAAACATCAGCAGGAAGACT CGAAGGCTGAGGTGCAGAATATCCAGGCATCGATACCAGGCACCGAGGAG CAGAAGGTGTAGGACTTCGGACGGCATGTCATCATATATATCCAACTCTG TAACATATGACGCGCAAAACCACTGCTCACAGGACTGTGAAAGTACATTC TCTCTGTTCTCATCCTCCTCGAAAGTAACATTTTCCAATCAGAGCAATGT GTCACCCCGGTCTATATCCGAGGACTTAATAGCTAATGATAGTAAATTCA AAAGTTCACGAAGAATTTCTGAGAATGGGAATCATCTGAGCATTCAAAGG AATAAAAAGAGGCCAATGGCAACAGATCAAATGACCGCACATCTAAGCTT CTCTTGGGTGCGCATGAGAGAAAAAGGAAGAGATAGATATTTCAAAACTT AAGAGCCATCATATTCGGGC back to topprotein sequence of NO01G05280.3 >NO01G05280.3-protein ID=NO01G05280.3-protein|Name=NO01G05280.3|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp METAPQNQQRDRKHIHHVTQEFSSIDEGCQDDHDCDSSDLSSQPNDSLSH YEGEPSLSTCSLRPGLYQHTGQAPHQLPLVDTYARLLLPSTRMGIIIGRR GEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVCWAVDLLAQ KAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEATSPTSASR VRKSSPSGEDGIIAASSHEKFELSPPGIKMVIDSSKAGLLLGKGGVIISK IRSKSKARVLLLDQSLSAKEGAVSHEGHKITKHKHKIFDQYHLSI* back to topmRNA from alignment at chr1:1408445..1411768- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05280.3 ID=NO01G05280.3|Name=NO01G05280.3|organism=Nannochloropsis oceanica|type=mRNA|length=3324bp|location=Sequence derived from alignment at chr1:1408445..1411768- (Nannochloropsis oceanica) CCACAACTAACTGCCAGAGCCGTTAATGGGAGAGAACTCTGACCCCGAGT
GGGATGCACGCACAGGGGTGTTAGATAGATACGATCTCCTCGACGTACAT
GATCTCAAGGTCTAGCCCATTCCTGTCACCTTGCCTCGCAAGACAAGATC
TTGGTCTTCTTGTCGAGCCTTGTGCCGGTGTGTGAATTCATCACGTCTAC
TACCCCCTCCAAGTCACAGCCCTCTGGTCACTAACAGCATTCCGTTTCCA
AATACTGCCCTGTCTCGATTACCAAAGCGCCGCTCCTCTTGCATCTTCAT
GTCTACTAGCACGCTGGTCGGCTCACAGCCCTGCCTCGCGTAAGCCTGAA
GCGGCCATACAGAGACACCCACTAAGCCTAGGTGGCATTCGAGCCCAGAG
GTGCTCGAGGTATACAAAGCGAAATATATTGAGCCTTGATGCAGAGAATA
TCACAGCACAGCCAAACCTATCCCCTGCTGACAACACAGATGTATACGTC
TGGACGAGAATCCCCAGTGACTATAGCACAAACGACTCACCTCTCTTTCT
ACCAACATATTGCCTCCTGCATAGACACAGAAGACACTGGTTCTGCACCT
AGAAAGGATCGGCTGGCTTAAAAACGCCTTGATTGTGATGCCACAAAATT
ATATTGCTGTTAAATGAGAGCTTATATCCCTCCCCCGTAGAAGTAGCCTT
AGTACTAGGTTTTTCAAATCGAAAAAAGCAGCCGTTTCCTGATAAGATGG
AGACTGCACCGCAAAATCAGCAACGAGACCGAAAGCATATCCATCATGTC
ACCCAAGAATTCTCCAGCATCGATGAAGGCTGCCAAGATGACCACGATTG
TGACTCGTCCGACTTATCATCGCAACCCAACGACTCTTTGTCCCACTACG
AGGGGTAAGTGAAGCAACCCAAATTTTTGAAGGCATGGTCAAACGACCCT
GCATCTTGGCCTTGGAGCAAAAATCAGCTTGTCCTCACCGATCTTGTACT
CTCACACACTCACACACTACAGTGAGCCCAGCTTGTCAACTTGCTCTTTG
CGTCCTGGTCTGTACCAGCACACTGGGCAAGGTACGTTTTGCATAAGTGC
TTTCCAAAGGCTATCCTTGCAACGTGCACCCAACTCTCTGCATCAACATC
TCATCATTGTTCCCTTGTGATAATCCCACAATGCCTGTGTAGCGCCTCAT
CAACTCCCACTCGTGGACACTTACGCCCGTTTACTGCTGCCCAGCACCCG
AATGGGTATAATAATTGGTCGTAGGGGGGAAGCGATTCGCAGTATTTGCG
ATATTACAGGGGCACACGTGAGCATTGCTTCCCTCGAGCATAACAAGCGC
GATTCCGCGCATCGCATGGTACGTCCTACTCTTCGGTCCTTTGTCCATGC
AGCATCGACAGTCGATTGAAACTCATCATGCATATTTCTCCTTTTCATTT
ACGCACAGGTTGTTGTCATGGGCTCCGCAATGTCCGTCTGCTGGGCTGTG
GACTTGCTTGCCCAAAAAGCAGGCCTTTTTGAAGGCTATAGCAACATCCA
CCCCCACCATAAAAGGTGAGATGAGCACTCAAAGATTAGGAATGAGGCAA
TTTTGGCCCAAGCTATATCCCATCTCATTCCTTACCGCACAGTCGAAAGC
ACTTAAAAACGCTCGTTAGTACTCCTACGTCCTCCTCAGTTCCCACCCGT
ATTGACTTAAAAGAAGCAACTAGCCCCACTAGCGCCTCCAGAGTACGTAA
ATCCAGCCCTTCGGGTGAGGATGGAATCATCGCTGCCTCCTCGCACGAGA
AGTTTGAGCTATCCCCTCCGGGTATCAAGATGGTGATCGACTCCTCCAAG
GTATTTCTCACAAAATCATTTCTCAAAAACATGTCCTGGCATTCGTCTCT
TTTCACGTACTATATAACGTCTAACTTTATCAAGTGCCCTTGTGCAACGC
GATTTTCCAAGCTCACTCATTCATATTTTCCCTTCCGCTTATACCTTCTC
TCCCGCCCCGTCCCCCTTCTTTCTGTTTATGACTTCAATGCAGGCGGGCT
TGCTATTAGGGAAAGGAGGCGTTATTATAAGTAAAATTCGCTCAAAATCC
AAAGCACGGGTCTTGCTTCTGGATCAGAGCTTAAGCGCCAAGGAAGGAGC
TGTAAGTCACGAGGGACATAAAATCACAAAGCACAAGCATAAAATATTCG
ATCAATACCATCTTTCAATCTGACATTCAACCGCCTATTCTCGTATTTAC
AGATTGCGAACGAGCGTATACTTATTATAATTGGCAAGCCTGATTATTGC
CGACGTGCCCATCAGCTCATTATCGCTGCTTTGAGTGCCAGTCCTCTGAC
GCCTGAGGATGTACTACATCATCAACAAGGGGGATCTAAATCTTGGAATC
ATCCGCAAGAGCCACAATTTATCCATCAACAACCATCCGCCTCCCAGGCT
ACCTTCAGTGACGATCATCAGTATCAACTAGCGGCGGCTCCGTACTTTTC
TGTGGCCAACCATTTATTGTGCTACCCCTCAAGCGAGCACATGAATATGG
TACGTATGATTTTGGGGCGGATCCATCCACACACGCTTATAACCAGCAAG
GAGATGGACTCAATCTTTATAAATTTACGATCAGTGATGCACTCACACAA
CAACTTCACCTGACCAAATAAACAGACCACTCTGAGTCAATCCATGTCAC
ACCTTTGTATGACCGACGACGGCCCCTACATTTTGTCTCCCTATGCCACC
GTACCTCTCCTCCCCAACAACCATCCATCACCGCAAGTGTATTACCTGGC
TCAAACTTTGGCGCCTTCCAATTTCCAGATCCATCAGCAACAGAAGACGG
TACAAAAGAAGCAACAGGAGCAACAGCTTCACCCGAAACATCAGCAGGAA
GACTCGAAGGCTGAGGTGCAGAATATCCAGGCATCGATACCAGGCACCGA
GGAGCAGAAGGTGTAGGACTTCGGACGGCATGTCATCATATATATCCAAC
TCTGTAACATATGACGCGCAAAACCACTGCTCACAGGACTGTGAAAGTAC
ATTCTCTCTGTTCTCATCCTCCTCGAAAGTAACATTTTCCAATCAGAGCA
ATGTGTCACCCCGGTCTATATCCGAGGACTTAATAGCTAATGATAGTAAA
TTCAAAAGTTCACGAAGAATTTCTGAGAATGGGAATCATCTGAGCATTCA
AAGGAATAAAAAGAGGCCAATGGCAACAGATCAAATGACCGCACATCTAA
GCTTCTCTTGGGTGCGCATGAGAGAAAAAGGAAGAGATAGATATTTCAAA
ACTTAAGAGCCATCATATTCGGGC back to topCoding sequence (CDS) from alignment at chr1:1408445..1411768- >NO01G05280.3 ID=NO01G05280.3|Name=NO01G05280.3|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr1:1408445..1411768- (Nannochloropsis oceanica) ATGGAGACTGCACCGCAAAATCAGCAACGAGACCGAAAGCATATCCATCA TGTCACCCAAGAATTCTCCAGCATCGATGAAGGCTGCCAAGATGACCACG ATTGTGACTCGTCCGACTTATCATCGCAACCCAACGACTCTTTGTCCCAC TACGAGGGTGAGCCCAGCTTGTCAACTTGCTCTTTGCGTCCTGGTCTGTA CCAGCACACTGGGCAAGCGCCTCATCAACTCCCACTCGTGGACACTTACG CCCGTTTACTGCTGCCCAGCACCCGAATGGGTATAATAATTGGTCGTAGG GGGGAAGCGATTCGCAGTATTTGCGATATTACAGGGGCACACGTGAGCAT TGCTTCCCTCGAGCATAACAAGCGCGATTCCGCGCATCGCATGGTTGTTG TCATGGGCTCCGCAATGTCCGTCTGCTGGGCTGTGGACTTGCTTGCCCAA AAAGCAGGCCTTTTTGAAGGCTATAGCAACATCCACCCCCACCATAAAAG TCGAAAGCACTTAAAAACGCTCGTTAGTACTCCTACGTCCTCCTCAGTTC CCACCCGTATTGACTTAAAAGAAGCAACTAGCCCCACTAGCGCCTCCAGA GTACGTAAATCCAGCCCTTCGGGTGAGGATGGAATCATCGCTGCCTCCTC GCACGAGAAGTTTGAGCTATCCCCTCCGGGTATCAAGATGGTGATCGACT CCTCCAAGGCGGGCTTGCTATTAGGGAAAGGAGGCGTTATTATAAGTAAA ATTCGCTCAAAATCCAAAGCACGGGTCTTGCTTCTGGATCAGAGCTTAAG CGCCAAGGAAGGAGCTGTAAGTCACGAGGGACATAAAATCACAAAGCACA AGCATAAAATATTCGATCAATACCATCTTTCAATCTGA back to top
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