NO01G05210, NO01G05210 (gene) Nannochloropsis oceanica

Overview
NameNO01G05210
Unique NameNO01G05210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1942
Alignment locationchr1:1383953..1385894 +

Link to JBrowse

Properties
Property NameValue
DescriptionD-lactate dehydrogenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1383953..1385894 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0050662coenzyme binding
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR006311TAT_signal
IPR001509Epimerase_deHydtase_N
IPR013549DUF1731
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
[Close]
BLAST of NO01G05210 vs. NCBI_GenBank
Match: XP_005855603.1 (D-lactate dehydrogenase [Nannochloropsis gaditana CCMP526] >EKU20766.1 D-lactate dehydrogenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 602.4 bits (1552), Expect = 1.000e-168
Identity = 322/410 (78.54%), Postives = 361/410 (88.05%), Query Frame = 0 
Query:   10 SSSRETTYRVSSMPSSRGTFLTSALVAALLPSFGSAFLFASPAAARCSSITQSSSRATRPTRLAAAAPTTSNAVDQLMGFFNTKG-GSGTGLAM-GGKKEYTVVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRSGATSWDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRILNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNAEFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAGFSFENPDILSGVQSALK 418
            SS+  +    SSMP +R +FLT+ALV  LLP   ++F  A+P   R  SI+   +R    + ++A + TTS+ VDQ+MGFFNT   GS T L++ GGKKEYTVVITGASGMIGRALT++LQ GT+ GK VKVVEISRRSGATSWDPATGAINA ALEGADAVVHLAGENVGSGSSESLTGRLGAWT+ KK+RILNSRRDGT+LLV+TI GLK+PPKVF+TASAVGYYGFDEGD VFDE+G LGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGG+IG+GQQYLSW+SLTDAVRAIQFLL A +LSGPVNVVAPEP TNAEFT+AMGKALFRPTILPFPAPAAQ+LFGEMG+EMLLGGQ+A+PKKL AAGF+FE+PDILSGVQSALK
Sbjct:  338 SSTITSISEFSSMPGNRRSFLTTALVFVLLPYLATSFSLAAP--YRMRSISTGPTRTGTVSSISATSSTTSSPVDQIMGFFNTGAKGSVTNLSLGGGKKEYTVVITGASGMIGRALTKALQGGTIAGKSVKVVEISRRSGATSWDPATGAINAAALEGADAVVHLAGENVGSGSSESLTGRLGAWTEQKKERILNSRRDGTALLVRTIQGLKNPPKVFLTASAVGYYGFDEGDRVFDETGALGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGIIGDGQQYLSWISLTDAVRAIQFLLGASRLSGPVNVVAPEPATNAEFTAAMGKALFRPTILPFPAPAAQLLFGEMGDEMLLGGQKAIPKKLLAAGFTFEDPDILSGVQSALK 745
[Close]
BLAST of NO01G05210 vs. NCBI_GenBank
Match: EWM29457.1 (nucleoside-diphosphate sugar epimerase [Nannochloropsis gaditana])

HSP 1 Score: 600.9 bits (1548), Expect = 3.000e-168
Identity = 318/398 (79.90%), Postives = 355/398 (89.20%), Query Frame = 0 
Query:   22 MPSSRGTFLTSALVAALLPSFGSAFLFASPAAARCSSITQSSSRATRPTRLAAAAPTTSNAVDQLMGFFNTKG-GSGTGLAM-GGKKEYTVVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRSGATSWDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRILNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNAEFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAGFSFENPDILSGVQSALK 418
            MP +R +FLT+ALV  LLP   ++F  A+P   R  SI+   +R    + ++A + TTS+ VDQ+MGFFNT   GS T L++ GGKKEYTVVITGASGMIGRALT++LQ GT+ GK VKVVEISRRSGATSWDPATGAINA ALEGADAVVHLAGENVGSGSSESLTGRLGAWT+ KK+RILNSRRDGT+LLV+TI GLK+PPKVF+TASAVGYYGFDEGD VFDE+G LGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGG+IG+GQQYLSW+SLTDAVRAIQFLL A +LSGPVNVVAPEP TNAEFT+AMGKALFRPTILPFPAPAAQ+LFGEMG+EMLLGGQ+A+PKKL AAGF+FE+PDILSGVQSALK
Sbjct:    1 MPGNRRSFLTTALVFVLLPYLATSFSLAAP--YRMRSISTGPTRTGTVSSISATSSTTSSPVDQIMGFFNTGAKGSVTNLSLGGGKKEYTVVITGASGMIGRALTKALQGGTIAGKSVKVVEISRRSGATSWDPATGAINAAALEGADAVVHLAGENVGSGSSESLTGRLGAWTEQKKERILNSRRDGTALLVRTIQGLKNPPKVFLTASAVGYYGFDEGDRVFDETGALGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGIIGDGQQYLSWISLTDAVRAIQFLLGASRLSGPVNVVAPEPATNAEFTAAMGKALFRPTILPFPAPAAQLLFGEMGDEMLLGGQKAIPKKLLAAGFTFEDPDILSGVQSALK 396
[Close]
BLAST of NO01G05210 vs. NCBI_GenBank
Match: CEL99615.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 305.8 bits (782), Expect = 2.000e-79
Identity = 178/400 (44.50%), Postives = 237/400 (59.25%), Query Frame = 0 
Query:   23 PSSRGTFLTSALVAALLPSFGSAFLFASPAAARCSSITQSSSRATRPTRLAAAAPTTSNAVDQLMGFFNTKGGSGTGLAMGGKKEYTVVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRSGAT----SWDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRILNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNAEFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAGFSFENPDILSGVQSALKK 419
            P S    ++S +++   PS  +AF  +SP +           R   P+RL A      + +  LMG    +GG    +A    K YT+ +TG+ G++G  L   L+   + G+ V V  + RR   T     WD + G  +   L+  DA+VHLAGENVGSG  E L   LG W+++KK +IL SR  GT  +V  I G++ PP VF+ ASAVGYYGF+ G+ +FDE    G+GFLA+V R WE EA +   K   RVVN RFGVV+S+ GG + KLLP+F LGGGGV+G+G+Q+  WVS  D   AI   L+   L GPVNVV P  VTNAEFT A+G+ L RPT  P P P AQVLFGEMG E+LLGGQ   PKKL  +G+ F++  I S +  A+ +
Sbjct:   10 PVSLLAAVSSLILSFHQPSPAAAFTLSSPVSPSAHLRLAHYPRPPSPSRLCAL-----DFLKDLMGTERERGGGTAVMA----KSYTIALTGSGGLVGSELMSMLEGTQINGRDVLVKRLVRRQPETVDEVQWDASAG--DPSLLQDVDAIVHLAGENVGSG--EGLLAPLGRWSESKKRKILESRVQGTRAVVDAILGMQRPPSVFVCASAVGYYGFNSGERLFDEGDAQGEGFLADVCRQWEEEAQRAASK--TRVVNTRFGVVMSRHGGALTKLLPLFSLGGGGVLGSGEQWFPWVSRRDVAGAILHALKTESLQGPVNVVGPSCVTNAEFTKALGRVLSRPTFFPLPTPVAQVLFGEMGEELLLGGQNVTPKKLLESGYEFQDSTIESALSWAVNQ 394
[Close]
BLAST of NO01G05210 vs. NCBI_GenBank
Match: GBC78254.1 (Epimerase family protein [bacterium HR08])

HSP 1 Score: 276.2 bits (705), Expect = 1.700e-70
Identity = 151/311 (48.55%), Postives = 199/311 (63.99%), Query Frame = 0 
Query:  110 VVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRSG--ATSWDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRILNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNAEFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAGFSFENPDILSGVQSALKK 419
            V++TG++G+IG AL   L AG  G + V++     R+      WDP  G ++A  LEG +AVVHLAGEN+            G WT  KK RI NSR  GT +L +T+  L+ PP V ++ASA+GYYG D GD +  E  P G+GFLA+V   WEA A +   +RGIRVV  RFG+VLS  GG + ++LP F+LG GG IG+GQQY SW+++ D VRAIQ  L    L GPVNVVAP+PV N EF   +G+ L RP +LP PA A +VLFG+MG E+LL  QR  P +L A+GF F+ PD+   ++  L+K
Sbjct:    3 VLVTGSTGLIGSALVPFLHAG--GHEVVRLARAPLRADEKVVLWDPEAGKLDASELEGVEAVVHLAGENIA-----------GRWTAEKKARIRNSRVRGTQVLAETLARLERPPAVLVSASAIGYYG-DRGDELLREESPPGRGFLADVATQWEA-ATEPAAQRGIRVVCLRFGIVLSPRGGALAQMLPPFRLGLGGPIGSGQQYWSWIAIDDVVRAIQHALLTETLRGPVNVVAPDPVRNREFVRTLGRVLGRPALLPMPALAVRVLFGQMGEELLLASQRVEPIRLLASGFVFQYPDLEGALRHLLRK 298
[Close]
BLAST of NO01G05210 vs. NCBI_GenBank
Match: OGG57100.1 (TIGR01777 family protein [Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10])

HSP 1 Score: 274.2 bits (700), Expect = 6.500e-70
Identity = 153/307 (49.84%), Postives = 197/307 (64.17%), Query Frame = 0 
Query:  110 VVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRSGATSWDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRILNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNAEFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAGFSFENPDILSGVQSAL 417
            V++TG++G+IG AL  SL AG  G +  ++V      GA  WDP  GA++A ALEG DAVVHLAGEN+ +            WT  +K RI +SR  GT LL + +  L  PPK  I ASA+GYYG D GD V  E G  G GFL EV R WE  AA+   ++GIRV + RFGVVLS  GG + K+L  F++G GGVIG+G+QY+SW++L DAV AIQ  L    L GPVN V+P PVTN EFT A+G+AL RPTI P PA AA++ FGE+ + +LL  QR  P +L AAG+ F  P++   ++  L
Sbjct:    3 VLVTGSTGLIGAALVPSLTAG--GRRVRRLVRSQAGEGAVRWDPEAGALDAAALEGMDAVVHLAGENIAA----------RRWTPEQKARIRDSRVRGTRLLCEALARLAQPPKTLICASAIGYYG-DRGDEVLREEGAPGTGFLPEVCREWEG-AAEPARQKGIRVAHLRFGVVLSAGGGALGKMLFPFRMGVGGVIGSGRQYMSWIALDDAVGAIQHALGTGALEGPVNAVSPHPVTNREFTKALGRALRRPTIFPMPALAARIAFGEVADALLLASQRVEPARLLAAGYVFRYPELEGALRHLL 295
[Close]
BLAST of NO01G05210 vs. NCBI_GenBank
Match: GBC81409.1 (Epimerase family protein [bacterium HR10])

HSP 1 Score: 273.9 bits (699), Expect = 8.500e-70
Identity = 150/311 (48.23%), Postives = 199/311 (63.99%), Query Frame = 0 
Query:  110 VVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRS--GATSWDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRILNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNAEFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAGFSFENPDILSGVQSALKK 419
            +++TG++G+IG AL   L+AG  G + V++     R+      WDP  G +NA  LEG +AVVHLAGEN+            G WT  KK RI NSR  GT LL +T+  L+ PP V ++ASA+GYYG D GD +  E  P G+GFLA+V   WEA A +   ++GIRVV  RFG+VLS  GG + ++LP F+LG GG IG+GQQY SWV++ D VRAIQ  L    L GPVNVVAP+PV N EF   +G+ L RP +L  PA A ++LFG+MG E+LL  QR  P +L A+GF F+ PD+   ++  L+K
Sbjct:    3 ILVTGSTGLIGSALVPFLRAG--GHEVVRLARAPLRAEEAVVLWDPEAGRLNASELEGVEAVVHLAGENIA-----------GRWTAEKKARIRNSRVRGTQLLAETLARLERPPAVLVSASAIGYYG-DRGDELLREESPPGRGFLADVAAQWEA-ATEPAAQKGIRVVILRFGIVLSPRGGALAQMLPPFRLGLGGPIGSGQQYWSWVAIDDVVRAIQHALLTETLRGPVNVVAPDPVRNHEFVRTLGRVLGRPALLSMPAFAVRLLFGQMGEELLLASQRVEPIRLLASGFVFQYPDLEGALRHLLRK 298
[Close]
BLAST of NO01G05210 vs. NCBI_GenBank
Match: OGP58363.1 (TIGR01777 family protein [Deltaproteobacteria bacterium RBG_13_61_14])

HSP 1 Score: 272.7 bits (696), Expect = 1.900e-69
Identity = 148/314 (47.13%), Postives = 202/314 (64.33%), Query Frame = 0 
Query:  110 VVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRS-----GATSWDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRILNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNAEFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAGFSFENPDILSGVQSALKK 419
            VVI+GA+G+IG  L   LQ      K  +V  + RR         +W+P+ G I+A ALEGADAVVHLAGEN+G+          G WT  +KDRIL SR + T LL   + GL++ P+V ++ASA+G+YG D GD V  E    G GFLAEV + WEA A +   + GIRV+NARFG+VL+ EGG +  +LP F+LG GG +G+G+Q++SWV+L+D VR IQFL+E   +SGPVN  +P PVTNAEF   +G+ L RP +   PAP  +++FGEMG  + L G R  P +L A+ F F  PD+ + ++  L+K
Sbjct:   12 VVISGATGLIGSRLAIFLQE-----KDHRVDRLVRRPPPLELTEIAWNPSQGRIDAAALEGADAVVHLAGENIGA----------GRWTFERKDRILKSRVESTRLLCGAVAGLQNKPRVLVSASAIGFYG-DRGDEVVREDSSPGTGFLAEVCQAWEA-ATEPARRAGIRVINARFGMVLAGEGGALAAMLPAFRLGLGGPMGSGKQFMSWVALSDLVRIIQFLIETESISGPVNAASPNPVTNAEFAKTLGRVLRRPALFRLPAPIIRLIFGEMGQALFLDGVRIAPAQLLASDFQFHYPDLENALRHELRK 308
[Close]
BLAST of NO01G05210 vs. NCBI_GenBank
Match: OGK99099.1 (TIGR01777 family protein [Candidatus Rokubacteria bacterium RIFCSPHIGHO2_12_FULL_73_22])

HSP 1 Score: 271.9 bits (694), Expect = 3.200e-69
Identity = 148/310 (47.74%), Postives = 200/310 (64.52%), Query Frame = 0 
Query:  110 VVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRSG---ATSWDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRILNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNAEFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAGFSFENPDILSGVQSAL 417
            V +TG+SG++G AL   L A   G + ++++     +    A +WDPA G I+A+ALEG DAVVHLAGE +            G WT AKK RI +SR   T+LL  T+  L  PP+V ++ASA+G+YG D GD V  E+ P G GFLAEV R WEA AA      GIRVV+ R G+ LS+ GG +  LLP+F+L  GG +G G Q++SW++L D V AI   L A  L+GPVN VAP PVTN EFT  +G+ L RP  LPFPAPAA++L GEM + +LL   R +P +LTA+G++FE+P++   +++ L
Sbjct:    3 VAVTGSSGLVGSALLPELAAR--GHRAIRLLRPGPPAAGEPAVAWDPAAGTIDARALEGVDAVVHLAGEGIA-----------GRWTAAKKARIRDSRVRPTALLAGTLARLARPPRVLVSASAIGWYG-DRGDEVLTEASPAGTGFLAEVCREWEA-AAGAAALAGIRVVHLRIGMALSRRGGALAALLPVFRLSLGGPVGRGAQWMSWIALDDLVGAIVHALGADTLAGPVNAVAPHPVTNREFTRTLGRVLRRPAFLPFPAPAARLLLGEMADALLLASARVLPLRLTASGYAFEHPELRGALRAEL 297
[Close]
BLAST of NO01G05210 vs. NCBI_GenBank
Match: OGL29609.1 (TIGR01777 family protein [Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_73_47])

HSP 1 Score: 270.8 bits (691), Expect = 7.200e-69
Identity = 148/310 (47.74%), Postives = 199/310 (64.19%), Query Frame = 0 
Query:  110 VVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRSG---ATSWDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRILNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNAEFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAGFSFENPDILSGVQSAL 417
            V +TG+SG++G AL   L A   G + ++++     +    A +WDPA G I+A+ALEG DAVVHLAGE V            G W+ AKK RI +SR   T+LL  T+  L  PP+V + ASA+G+YG D GD V  E+ P G GFLAEV R WEA AA      GIRVV+ R G+ LS+ GG +  LLP+F+L  GG +G G Q++SW++L D V AI   L A  L+GPVN VAP PVTN EFT  +G+ L RP  LPFPAPAA++L GEM + +LL   R +P +LTA+G++FE+P++   +++ L
Sbjct:    3 VAVTGSSGLVGSALLPELAAR--GHRAIRLLRPGPPAAGEPAVAWDPAAGTIDARALEGVDAVVHLAGEGVA-----------GRWSAAKKARIRDSRVRSTALLAGTLARLARPPRVLVCASAIGWYG-DRGDEVLTEASPAGTGFLAEVCREWEA-AAGAAALAGIRVVHLRIGMALSRRGGALAALLPVFRLSLGGPVGRGAQWMSWIALDDLVGAIVHALGADTLAGPVNAVAPHPVTNREFTRTLGRVLRRPAFLPFPAPAARLLLGEMADALLLASARVLPLRLTASGYAFEHPELRGALRAEL 297
[Close]
BLAST of NO01G05210 vs. NCBI_GenBank
Match: OGL11527.1 (TIGR01777 family protein [Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_73_56])

HSP 1 Score: 268.5 bits (685), Expect = 3.600e-68
Identity = 147/310 (47.42%), Postives = 198/310 (63.87%), Query Frame = 0 
Query:  110 VVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRSG---ATSWDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRILNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNAEFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAGFSFENPDILSGVQSAL 417
            V +TG+SG++G AL   L A   G + ++++     +    A +WDPA G I+A+ALEG DAVVHLAGE V            G W+ AKK RI +SR   T+LL  T+  L  PP+V + ASA+G+YG D GD V  E+ P G GFLAEV R WEA AA       IRVV+ R G+ LS+ GG +  LLP+F+L  GG +G G Q++SW++L D V AI   L A  L+GPVN VAP PVTN EFT  +G+ L RP  LPFPAPAA++L GEM + +LL   R +P +LTA+G++FE+P++   +++ L
Sbjct:    3 VAVTGSSGLVGSALLPELAAR--GHRAIRLLRPGPPAAGEPAVAWDPAAGTIDARALEGVDAVVHLAGEGVA-----------GRWSAAKKARIRDSRVRSTALLAGTLARLARPPRVLVCASAIGWYG-DRGDEVLTEASPAGTGFLAEVCREWEA-AAGAAALAAIRVVHLRIGMALSRRGGALAALLPVFRLSLGGPVGRGAQWMSWIALDDLVGAIVHALGADTLAGPVNAVAPHPVTNREFTRTLGRVLRRPAFLPFPAPAARLLLGEMADALLLASARVLPLRLTASGYAFEHPELRGALRAEL 297
The following BLAST results are available for this feature:
BLAST of NO01G05210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855603.11.000e-16878.54D-lactate dehydrogenase [Nannochloropsis gaditana ... [more]
EWM29457.13.000e-16879.90nucleoside-diphosphate sugar epimerase [Nannochlor... [more]
CEL99615.12.000e-7944.50unnamed protein product [Vitrella brassicaformis C... [more]
GBC78254.11.700e-7048.55Epimerase family protein [bacterium HR08][more]
OGG57100.16.500e-7049.84TIGR01777 family protein [Candidatus Handelsmanbac... [more]
GBC81409.18.500e-7048.23Epimerase family protein [bacterium HR10][more]
OGP58363.11.900e-6947.13TIGR01777 family protein [Deltaproteobacteria bact... [more]
OGK99099.13.200e-6947.74TIGR01777 family protein [Candidatus Rokubacteria ... [more]
OGL29609.17.200e-6947.74TIGR01777 family protein [Candidatus Rokubacteria ... [more]
OGL11527.13.600e-6847.42TIGR01777 family protein [Candidatus Rokubacteria ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007737NSK007737Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05210.1NO01G05210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577673gene_552Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100083g19gene1173Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05210.1NO01G05210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05210 ID=NO01G05210|Name=NO01G05210|organism=Nannochloropsis oceanica|type=gene|length=1942bp
CTGATCTTCCTCGGATCAGAGGAAGGCCACCTCACTGCAAACCTCTGAAT
TGGAATTGCACATTTGTTCCTGTTATTTTCCGATTTGCGTCACTTCTGGT
CTTTAGTGTGTGTAAGGTGGCATGAAAAGCACACCGTCAGAGACGACATC
TCTGCCCGGTTCCAACTATGTCAACATTCGCTCACTCATCTCACTCTTCC
TCACGCGAAACCACCTACAGAGTCAGCAGTATGCCGAGCAGCAGAGGCAC
CTTCTTGACCAGTGCTTTGGTCGCCGCCCTCCTCCCCTCCTTTGGTAGCG
CTTTCCTCTTTGCCTCTCCCGCCGCCGCACGCTGCAGCAGgtaaataaac
ggacggggcgcctccccaagagcattctagcgactcatctcgtttgctcc
tttttcctccctaaagtgtcccgaacctgcctctcaaaagtcgttcctcc
ttctttctatcggtcatcttgttgatttggttctactttattttcggtat
atcttatctgagcactctgcccatccttctccttcctcctgtgctaccag
TATCACCCAAAGCTCCAGCCGCGCCACCAGGCCGACCCGCCTGGCAGCTG
CCGCGCCCACCACCAGCAACGCCGTCGATCAGCTTATGGGCTTCTTCAAC
ACCAAGGGTGGCAGTGGCACAGGCCTGGCAATGGGTGGGAAGAAAGAGTA
CACCGTCGTCATCACGGGAGCCTCGGGTATGATCGGCCGAGCGCTGACCC
AGTCCTTGCAAGCCGGCACAGTCGGGGGAAAGCCCGTGAAGGTCGTGGAA
ATCTCGCGACGCAGCGGGGCTACGTCCTGGGATCCGGCCACGGGTGCGAT
AAACGCTCAGGCTTTGGAAGGGGCGGATGCGGTGGTGCATCTTGCCGGAG
AAAATGTCGGATCTGGGTCAAGCGAGTCCTTGACAGGGCGATTGGGCGCG
TGGACGGACGCCAAGAAGGATCGGATTTTGAACAGTCGAAGGGACGGGAC
GTCGTTGTTGGTTAAGACGATTGGGGGATTGAAATCTCCACCCAAGGTGT
TTATCACGGCAAGCGCGGTTGGCTATTATGGTTTTGATGAGGGGGACACT
GTCTTCGACGAGAGTGGGCCGTTGGGCAAGGGTTTCCTGGCAGAGGTGAC
GAGGGTTTGGGAAGCGGAAGCAGCGAAGTTGCAGGGGAAGAGGGGCATTC
GTGTGGTGAATGCTCGGTTTGGCGTGGTCCTGAGTAAGGAGGGAGGGATT
ATCAAGAAACTCTTGCCTATCTTTCAGCTCGGCGGGGGAGGGGTGATTGG
TAATGGGCAGCAGTACCTTTCCTGGGTTAGCTTGACGGATGCTGTGCGTG
CGATTCAATTTCTGTTGGAAGCACCGAAGTTGTCAGGGCCTGTGAATGTG
GTGGCGCCTGAGCCGGTGACAAATGCCGAATTTACCTCTGCGATGGGCAA
GGCGTTGTTTCGACCGACGgtaggtacacaggagggaaggacgggggagg
gtattgtacgagctttgctggtaatcatgaaattcattttttttccaatt
tctaatattttcagATTTTGCCTTTCCCTGCGCCGGCCGCCCAGGTTCTT
TTTGGCGAGATGGGGAACGAAATGCTCTTGGGAGGACAACGGGCAGTTCC
CAAGAAATTGACCGCTGCGGGCTTTTCCTTCGAAAACCCCGACATTTTGT
CCGGCGTACAGAGTGCGTTGAAAAAATAAATCTGGTTGACAACTGAAAGC
GAAGGAGAGGATTTCTGAGTTGTTGGTCTGCATGGGTGAGTGTGAGTGAG
TGAGTGTATGTGTGTGTGAGTGTTTAGAGTGACCTAGAGATACCCCCAGT
AGAAGAAGGGAAGGAAAAATGAATTTAAAAAAGCGCACACACAGGGCTTT
GTGTGCGTCATCGGAGTGGTTATCGATCGTGTATTCAGAACA
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protein sequence of NO01G05210.1

>NO01G05210.1-protein ID=NO01G05210.1-protein|Name=NO01G05210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MSTFAHSSHSSSRETTYRVSSMPSSRGTFLTSALVAALLPSFGSAFLFAS
PAAARCSSITQSSSRATRPTRLAAAAPTTSNAVDQLMGFFNTKGGSGTGL
AMGGKKEYTVVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRSGATS
WDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRI
LNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLG
KGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQ
LGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNA
EFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAG
FSFENPDILSGVQSALKK*
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Synonyms
Publications