NO01G05210.1, NO01G05210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05210.1
Unique NameNO01G05210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1637
Alignment locationchr1:1383953..1385894 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1383953..1385894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05210.1 vs.
Match: XP_005855603.1 (D-lactate dehydrogenase [Nannochloropsis gaditana CCMP526]; EKU20766.1 D-lactate dehydrogenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 602.4 bits (1552), Expect = 1.000e-168
Identity = 322/410 (78.54%), Postives = 361/410 (88.05%), Query Frame = 0 
Query:   10 SSSRETTYRVSSMPSSRGTFLTSALVAALLPSFGSAFLFASPAAARCSSITQSSSRATRPTRLAAAAPTTSNAVDQLMGFFNTKG-GSGTGLAM-GGKKEYTVVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRSGATSWDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRILNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNAEFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAGFSFENPDILSGVQSALK 418
            SS+  +    SSMP +R +FLT+ALV  LLP   ++F  A+P   R  SI+   +R    + ++A + TTS+ VDQ+MGFFNT   GS T L++ GGKKEYTVVITGASGMIGRALT++LQ GT+ GK VKVVEISRRSGATSWDPATGAINA ALEGADAVVHLAGENVGSGSSESLTGRLGAWT+ KK+RILNSRRDGT+LLV+TI GLK+PPKVF+TASAVGYYGFDEGD VFDE+G LGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGG+IG+GQQYLSW+SLTDAVRAIQFLL A +LSGPVNVVAPEP TNAEFT+AMGKALFRPTILPFPAPAAQ+LFGEMG+EMLLGGQ+A+PKKL AAGF+FE+PDILSGVQSALK
Sbjct:  338 SSTITSISEFSSMPGNRRSFLTTALVFVLLPYLATSFSLAAP--YRMRSISTGPTRTGTVSSISATSSTTSSPVDQIMGFFNTGAKGSVTNLSLGGGKKEYTVVITGASGMIGRALTKALQGGTIAGKSVKVVEISRRSGATSWDPATGAINAAALEGADAVVHLAGENVGSGSSESLTGRLGAWTEQKKERILNSRRDGTALLVRTIQGLKNPPKVFLTASAVGYYGFDEGDRVFDETGALGKGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQLGGGGIIGDGQQYLSWISLTDAVRAIQFLLGASRLSGPVNVVAPEPATNAEFTAAMGKALFRPTILPFPAPAAQLLFGEMGDEMLLGGQKAIPKKLLAAGFTFEDPDILSGVQSALK 745
The following BLAST results are available for this feature:
BLAST of NO01G05210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855603.11.000e-16878.54D-lactate dehydrogenase [Nannochloropsis gaditana ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05210NO01G05210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05210.1NO01G05210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05210.1.cds1NO01G05210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05210.1.cds2NO01G05210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05210.1.cds3NO01G05210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05210.1 ID=NO01G05210.1|Name=NO01G05210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1637bp
CTGATCTTCCTCGGATCAGAGGAAGGCCACCTCACTGCAAACCTCTGAAT
TGGAATTGCACATTTGTTCCTGTTATTTTCCGATTTGCGTCACTTCTGGT
CTTTAGTGTGTGTAAGGTGGCATGAAAAGCACACCGTCAGAGACGACATC
TCTGCCCGGTTCCAACTATGTCAACATTCGCTCACTCATCTCACTCTTCC
TCACGCGAAACCACCTACAGAGTCAGCAGTATGCCGAGCAGCAGAGGCAC
CTTCTTGACCAGTGCTTTGGTCGCCGCCCTCCTCCCCTCCTTTGGTAGCG
CTTTCCTCTTTGCCTCTCCCGCCGCCGCACGCTGCAGCAGTATCACCCAA
AGCTCCAGCCGCGCCACCAGGCCGACCCGCCTGGCAGCTGCCGCGCCCAC
CACCAGCAACGCCGTCGATCAGCTTATGGGCTTCTTCAACACCAAGGGTG
GCAGTGGCACAGGCCTGGCAATGGGTGGGAAGAAAGAGTACACCGTCGTC
ATCACGGGAGCCTCGGGTATGATCGGCCGAGCGCTGACCCAGTCCTTGCA
AGCCGGCACAGTCGGGGGAAAGCCCGTGAAGGTCGTGGAAATCTCGCGAC
GCAGCGGGGCTACGTCCTGGGATCCGGCCACGGGTGCGATAAACGCTCAG
GCTTTGGAAGGGGCGGATGCGGTGGTGCATCTTGCCGGAGAAAATGTCGG
ATCTGGGTCAAGCGAGTCCTTGACAGGGCGATTGGGCGCGTGGACGGACG
CCAAGAAGGATCGGATTTTGAACAGTCGAAGGGACGGGACGTCGTTGTTG
GTTAAGACGATTGGGGGATTGAAATCTCCACCCAAGGTGTTTATCACGGC
AAGCGCGGTTGGCTATTATGGTTTTGATGAGGGGGACACTGTCTTCGACG
AGAGTGGGCCGTTGGGCAAGGGTTTCCTGGCAGAGGTGACGAGGGTTTGG
GAAGCGGAAGCAGCGAAGTTGCAGGGGAAGAGGGGCATTCGTGTGGTGAA
TGCTCGGTTTGGCGTGGTCCTGAGTAAGGAGGGAGGGATTATCAAGAAAC
TCTTGCCTATCTTTCAGCTCGGCGGGGGAGGGGTGATTGGTAATGGGCAG
CAGTACCTTTCCTGGGTTAGCTTGACGGATGCTGTGCGTGCGATTCAATT
TCTGTTGGAAGCACCGAAGTTGTCAGGGCCTGTGAATGTGGTGGCGCCTG
AGCCGGTGACAAATGCCGAATTTACCTCTGCGATGGGCAAGGCGTTGTTT
CGACCGACGATTTTGCCTTTCCCTGCGCCGGCCGCCCAGGTTCTTTTTGG
CGAGATGGGGAACGAAATGCTCTTGGGAGGACAACGGGCAGTTCCCAAGA
AATTGACCGCTGCGGGCTTTTCCTTCGAAAACCCCGACATTTTGTCCGGC
GTACAGAGTGCGTTGAAAAAATAAATCTGGTTGACAACTGAAAGCGAAGG
AGAGGATTTCTGAGTTGTTGGTCTGCATGGGTGAGTGTGAGTGAGTGAGT
GTATGTGTGTGTGAGTGTTTAGAGTGACCTAGAGATACCCCCAGTAGAAG
AAGGGAAGGAAAAATGAATTTAAAAAAGCGCACACACAGGGCTTTGTGTG
CGTCATCGGAGTGGTTATCGATCGTGTATTCAGAACA
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protein sequence of NO01G05210.1

>NO01G05210.1-protein ID=NO01G05210.1-protein|Name=NO01G05210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MSTFAHSSHSSSRETTYRVSSMPSSRGTFLTSALVAALLPSFGSAFLFAS
PAAARCSSITQSSSRATRPTRLAAAAPTTSNAVDQLMGFFNTKGGSGTGL
AMGGKKEYTVVITGASGMIGRALTQSLQAGTVGGKPVKVVEISRRSGATS
WDPATGAINAQALEGADAVVHLAGENVGSGSSESLTGRLGAWTDAKKDRI
LNSRRDGTSLLVKTIGGLKSPPKVFITASAVGYYGFDEGDTVFDESGPLG
KGFLAEVTRVWEAEAAKLQGKRGIRVVNARFGVVLSKEGGIIKKLLPIFQ
LGGGGVIGNGQQYLSWVSLTDAVRAIQFLLEAPKLSGPVNVVAPEPVTNA
EFTSAMGKALFRPTILPFPAPAAQVLFGEMGNEMLLGGQRAVPKKLTAAG
FSFENPDILSGVQSALKK*
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mRNA from alignment at chr1:1383953..1385894+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05210.1 ID=NO01G05210.1|Name=NO01G05210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp|location=Sequence derived from alignment at chr1:1383953..1385894+ (Nannochloropsis oceanica)
CTGATCTTCCTCGGATCAGAGGAAGGCCACCTCACTGCAAACCTCTGAAT
TGGAATTGCACATTTGTTCCTGTTATTTTCCGATTTGCGTCACTTCTGGT
CTTTAGTGTGTGTAAGGTGGCATGAAAAGCACACCGTCAGAGACGACATC
TCTGCCCGGTTCCAACTATGTCAACATTCGCTCACTCATCTCACTCTTCC
TCACGCGAAACCACCTACAGAGTCAGCAGTATGCCGAGCAGCAGAGGCAC
CTTCTTGACCAGTGCTTTGGTCGCCGCCCTCCTCCCCTCCTTTGGTAGCG
CTTTCCTCTTTGCCTCTCCCGCCGCCGCACGCTGCAGCAGGTAAATAAAC
GGACGGGGCGCCTCCCCAAGAGCATTCTAGCGACTCATCTCGTTTGCTCC
TTTTTCCTCCCTAAAGTGTCCCGAACCTGCCTCTCAAAAGTCGTTCCTCC
TTCTTTCTATCGGTCATCTTGTTGATTTGGTTCTACTTTATTTTCGGTAT
ATCTTATCTGAGCACTCTGCCCATCCTTCTCCTTCCTCCTGTGCTACCAG
TATCACCCAAAGCTCCAGCCGCGCCACCAGGCCGACCCGCCTGGCAGCTG
CCGCGCCCACCACCAGCAACGCCGTCGATCAGCTTATGGGCTTCTTCAAC
ACCAAGGGTGGCAGTGGCACAGGCCTGGCAATGGGTGGGAAGAAAGAGTA
CACCGTCGTCATCACGGGAGCCTCGGGTATGATCGGCCGAGCGCTGACCC
AGTCCTTGCAAGCCGGCACAGTCGGGGGAAAGCCCGTGAAGGTCGTGGAA
ATCTCGCGACGCAGCGGGGCTACGTCCTGGGATCCGGCCACGGGTGCGAT
AAACGCTCAGGCTTTGGAAGGGGCGGATGCGGTGGTGCATCTTGCCGGAG
AAAATGTCGGATCTGGGTCAAGCGAGTCCTTGACAGGGCGATTGGGCGCG
TGGACGGACGCCAAGAAGGATCGGATTTTGAACAGTCGAAGGGACGGGAC
GTCGTTGTTGGTTAAGACGATTGGGGGATTGAAATCTCCACCCAAGGTGT
TTATCACGGCAAGCGCGGTTGGCTATTATGGTTTTGATGAGGGGGACACT
GTCTTCGACGAGAGTGGGCCGTTGGGCAAGGGTTTCCTGGCAGAGGTGAC
GAGGGTTTGGGAAGCGGAAGCAGCGAAGTTGCAGGGGAAGAGGGGCATTC
GTGTGGTGAATGCTCGGTTTGGCGTGGTCCTGAGTAAGGAGGGAGGGATT
ATCAAGAAACTCTTGCCTATCTTTCAGCTCGGCGGGGGAGGGGTGATTGG
TAATGGGCAGCAGTACCTTTCCTGGGTTAGCTTGACGGATGCTGTGCGTG
CGATTCAATTTCTGTTGGAAGCACCGAAGTTGTCAGGGCCTGTGAATGTG
GTGGCGCCTGAGCCGGTGACAAATGCCGAATTTACCTCTGCGATGGGCAA
GGCGTTGTTTCGACCGACGGTAGGTACACAGGAGGGAAGGACGGGGGAGG
GTATTGTACGAGCTTTGCTGGTAATCATGAAATTCATTTTTTTTCCAATT
TCTAATATTTTCAGATTTTGCCTTTCCCTGCGCCGGCCGCCCAGGTTCTT
TTTGGCGAGATGGGGAACGAAATGCTCTTGGGAGGACAACGGGCAGTTCC
CAAGAAATTGACCGCTGCGGGCTTTTCCTTCGAAAACCCCGACATTTTGT
CCGGCGTACAGAGTGCGTTGAAAAAATAAATCTGGTTGACAACTGAAAGC
GAAGGAGAGGATTTCTGAGTTGTTGGTCTGCATGGGTGAGTGTGAGTGAG
TGAGTGTATGTGTGTGTGAGTGTTTAGAGTGACCTAGAGATACCCCCAGT
AGAAGAAGGGAAGGAAAAATGAATTTAAAAAAGCGCACACACAGGGCTTT
GTGTGCGTCATCGGAGTGGTTATCGATCGTGTATTCAGAACA
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Coding sequence (CDS) from alignment at chr1:1383953..1385894+

>NO01G05210.1 ID=NO01G05210.1|Name=NO01G05210.1|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at chr1:1383953..1385894+ (Nannochloropsis oceanica)
ATGTCAACATTCGCTCACTCATCTCACTCTTCCTCACGCGAAACCACCTA
CAGAGTCAGCAGTATGCCGAGCAGCAGAGGCACCTTCTTGACCAGTGCTT
TGGTCGCCGCCCTCCTCCCCTCCTTTGGTAGCGCTTTCCTCTTTGCCTCT
CCCGCCGCCGCACGCTGCAGCAGTATCACCCAAAGCTCCAGCCGCGCCAC
CAGGCCGACCCGCCTGGCAGCTGCCGCGCCCACCACCAGCAACGCCGTCG
ATCAGCTTATGGGCTTCTTCAACACCAAGGGTGGCAGTGGCACAGGCCTG
GCAATGGGTGGGAAGAAAGAGTACACCGTCGTCATCACGGGAGCCTCGGG
TATGATCGGCCGAGCGCTGACCCAGTCCTTGCAAGCCGGCACAGTCGGGG
GAAAGCCCGTGAAGGTCGTGGAAATCTCGCGACGCAGCGGGGCTACGTCC
TGGGATCCGGCCACGGGTGCGATAAACGCTCAGGCTTTGGAAGGGGCGGA
TGCGGTGGTGCATCTTGCCGGAGAAAATGTCGGATCTGGGTCAAGCGAGT
CCTTGACAGGGCGATTGGGCGCGTGGACGGACGCCAAGAAGGATCGGATT
TTGAACAGTCGAAGGGACGGGACGTCGTTGTTGGTTAAGACGATTGGGGG
ATTGAAATCTCCACCCAAGGTGTTTATCACGGCAAGCGCGGTTGGCTATT
ATGGTTTTGATGAGGGGGACACTGTCTTCGACGAGAGTGGGCCGTTGGGC
AAGGGTTTCCTGGCAGAGGTGACGAGGGTTTGGGAAGCGGAAGCAGCGAA
GTTGCAGGGGAAGAGGGGCATTCGTGTGGTGAATGCTCGGTTTGGCGTGG
TCCTGAGTAAGGAGGGAGGGATTATCAAGAAACTCTTGCCTATCTTTCAG
CTCGGCGGGGGAGGGGTGATTGGTAATGGGCAGCAGTACCTTTCCTGGGT
TAGCTTGACGGATGCTGTGCGTGCGATTCAATTTCTGTTGGAAGCACCGA
AGTTGTCAGGGCCTGTGAATGTGGTGGCGCCTGAGCCGGTGACAAATGCC
GAATTTACCTCTGCGATGGGCAAGGCGTTGTTTCGACCGACGATTTTGCC
TTTCCCTGCGCCGGCCGCCCAGGTTCTTTTTGGCGAGATGGGGAACGAAA
TGCTCTTGGGAGGACAACGGGCAGTTCCCAAGAAATTGACCGCTGCGGGC
TTTTCCTTCGAAAACCCCGACATTTTGTCCGGCGTACAGAGTGCGTTGAA
AAAATAA
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Synonyms
Publications