NO01G05020, NO01G05020 (gene) Nannochloropsis oceanica

Overview
NameNO01G05020
Unique NameNO01G05020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2794
Alignment locationchr1:1334207..1337000 -

Link to JBrowse

Properties
Property NameValue
DescriptionSuccinate dehydrogenase [ubiquinone] iron-sulfur subunit
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1334207..1337000 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR009051Helical_ferredxn
IPR0360102Fe-2S_ferredoxin-like_sf
IPR0010412Fe-2S_ferredoxin-type
IPR0178964Fe4S_Fe-S-bd
IPR025192Succ_DH/fum_Rdtase_N
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
BLAST of NO01G05020 vs. NCBI_GenBank
Match: EWM29428.1 (succinate dehydrogenase iron sulfur protein [Nannochloropsis gaditana])

HSP 1 Score: 553.1 bits (1424), Expect = 4.900e-154
Identity = 261/282 (92.55%), Postives = 268/282 (95.04%), Query Frame = 0
Query:    1 MLRLHQQAGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH 283
            MLRL Q AGRR+ AA  GS A RAVSSSA TPAPQQDLKLK+S KGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDP+LTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEP KIYPLPHMYVLKDLVPDMTNFY QYKSIEPWL+ KA E+KDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDE+T+ERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAA H
Sbjct:    1 MLRLQQHAGRRIAAAVVGSPAFRAVSSSATTPAPQQDLKLKSSAKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPTKIYPLPHMYVLKDLVPDMTNFYDQYKSIEPWLQTKAVEAKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEYTKERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAATH 282          
BLAST of NO01G05020 vs. NCBI_GenBank
Match: XP_008870586.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Aphanomyces invadans] >ETW00451.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Aphanomyces invadans])

HSP 1 Score: 415.6 bits (1067), Expect = 1.200e-112
Identity = 196/268 (73.13%), Postives = 222/268 (82.84%), Query Frame = 0
Query:   20 TATRAVSSSA-----ATPAPQQDLKLKASPKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH 283
            TA RAV ++A     A      DLKL+AS   N+K+FK+YRWDPE   KPYL TYPVDL++CGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNIDG NTLACLS I+K  +  KIYPLPHMYV++DLVPDM NFYAQYKSI+PWL  ++   K  N E+LQSKEDRKKLDGMYECILCACCST+CPSYWW  DKYLGPAVLMQA+RWIEDSRD  T ERLE+L+D++KLYRCHTIMNCTK CPKHLNP +AI  IKK+LA +H
Sbjct:    5 TAARAVRAAAPSGLRALSTAPSDLKLQASTTKNVKYFKIYRWDPESKDKPYLCTYPVDLNECGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGGNTLACLSPIDKKKDTTKIYPLPHMYVIRDLVPDMNNFYAQYKSIKPWL--QSDVVKSDNAEYLQSKEDRKKLDGMYECILCACCSTSCPSYWWNPDKYLGPAVLMQAFRWIEDSRDTKTLERLESLNDAYKLYRCHTIMNCTKTCPKHLNPAKAIGKIKKKLAVLH 270          
BLAST of NO01G05020 vs. NCBI_GenBank
Match: GAX17289.1 (succinate dehydrogenase (ubiquinone) iron-sulfur subunit [Fistulifera solaris])

HSP 1 Score: 415.6 bits (1067), Expect = 1.200e-112
Identity = 198/245 (80.82%), Postives = 212/245 (86.53%), Query Frame = 0
Query:   37 DLKLKASPKG-NIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKG-PEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLA 280
            +LK   SPK  NIK+FKVYRWDPEQ+QKPYLSTYPVDL+DCGPMVLDAL KIKNEQDPSLTFRRSCREGICGSCAMNIDG N LACLSYI K   +  KIYPLPHMYV+KDLVPDM NFY QY+SIEPWL+    E K    E+LQS++DR KLDGMYECILCACCSTACPSYWW ADKYLGPAVLMQAYRWIEDSRD  T +RL  LDD+FKLYRCHTIMNCTKVCPKHLNPG+AIA IKKRLA
Sbjct:   26 ELKKTISPKSENIKYFKVYRWDPEQSQKPYLSTYPVDLNDCGPMVLDALIKIKNEQDPSLTFRRSCREGICGSCAMNIDGVNNLACLSYIEKDTSKATKIYPLPHMYVIKDLVPDMGNFYEQYRSIEPWLQ-PGQEKKPGQGEYLQSEQDRAKLDGMYECILCACCSTACPSYWWNADKYLGPAVLMQAYRWIEDSRDGSTAKRLADLDDAFKLYRCHTIMNCTKVCPKHLNPGKAIASIKKRLA 269          
BLAST of NO01G05020 vs. NCBI_GenBank
Match: GAX18642.1 (succinate dehydrogenase (ubiquinone) iron-sulfur subunit [Fistulifera solaris])

HSP 1 Score: 415.2 bits (1066), Expect = 1.600e-112
Identity = 197/245 (80.41%), Postives = 213/245 (86.94%), Query Frame = 0
Query:   37 DLKLKASPKG-NIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKG-PEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLA 280
            +LK   SPK  NIK+FKVYRWDPEQ+QKPYLSTYPVDL++CGPMVLDAL KIKNEQDPSLTFRRSCREGICGSCAMNIDG N LACLSYI K   +  KIYPLPHMYV+KDLVPDM+NFY QY+SIEPWL+    E K    E+LQS++DR KLDGMYECILCACCSTACPSYWW ADKYLGPAVLMQAYRWIEDSRD  T +RL  LDD+FKLYRCHTIMNCTKVCPKHLNPG+AIA IKKRLA
Sbjct:   26 ELKKTISPKSENIKYFKVYRWDPEQSQKPYLSTYPVDLNECGPMVLDALIKIKNEQDPSLTFRRSCREGICGSCAMNIDGVNNLACLSYIEKDTSKATKIYPLPHMYVIKDLVPDMSNFYEQYRSIEPWLQ-PGQEKKPGQGEYLQSEQDRAKLDGMYECILCACCSTACPSYWWNADKYLGPAVLMQAYRWIEDSRDGSTAKRLADLDDAFKLYRCHTIMNCTKVCPKHLNPGKAIASIKKRLA 269          
BLAST of NO01G05020 vs. NCBI_GenBank
Match: OQR83267.1 (succinate dehydrogenase iron-sulfur protein, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 413.7 bits (1062), Expect = 4.600e-112
Identity = 195/275 (70.91%), Postives = 223/275 (81.09%), Query Frame = 0
Query:    7 QAGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAV 282
            Q  R L  A+  +   R+ ++ A       DLKL+++   N+K+FK+YRWDPE  +KPY+ TYPVDL++CGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNIDG NTLACLS INK  +  KIYPLPHMYV++DLVPDM NFY QYKSI+PWL  ++   KD N E+LQSKEDRKKLDGMYECILCACCST+CPSYWW  DKYLGPAVLMQA+RWIEDSRD  T+ERL ALDD+FKLYRCHTIMNCTK CPKHLNP +AI  IKK LA V
Sbjct:    3 QTSRVLTRASLAAAGARSFAAQAG------DLKLQSASTKNVKYFKIYRWDPESKEKPYMCTYPVDLNECGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGGNTLACLSPINKKSDTTKIYPLPHMYVIRDLVPDMNNFYEQYKSIQPWL--QSDVVKDDNTEYLQSKEDRKKLDGMYECILCACCSTSCPSYWWNPDKYLGPAVLMQAFRWIEDSRDTKTKERLAALDDTFKLYRCHTIMNCTKTCPKHLNPAKAIGKIKKMLAPV 269          
BLAST of NO01G05020 vs. NCBI_GenBank
Match: CBJ32043.1 (SDH2, succinate dehydrogenase subunit 2 [Ectocarpus siliculosus])

HSP 1 Score: 412.9 bits (1060), Expect = 7.900e-112
Identity = 186/236 (78.81%), Postives = 212/236 (89.83%), Query Frame = 0
Query:   47 NIKFFKVYRWDP-EQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAV 282
            ++K FK+YRWDP E++QKPY+ TYP+D DDCGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNI+G NTLACL  I +   P KIYPLPHM+V KDLVPDMTNFY QYKSIEPWLK K  + KDP+ EHLQS +DRKKLDGMYECILCACCST+CPSYWW ADKYLGPAVLMQAYRWI+DSRD++T+ERLE+LDD+FKL+RCHTIMNCTK CPKHLNPG+AIA+IKKR+ A+
Sbjct:   47 SVKTFKIYRWDPNEKDQKPYMKTYPIDRDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTK--KDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 280          
BLAST of NO01G05020 vs. NCBI_GenBank
Match: XP_002184001.1 (succinate dehydrogenase iron sulfur protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44670.1 succinate dehydrogenase iron sulfur protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 411.0 bits (1055), Expect = 3.000e-111
Identity = 200/273 (73.26%), Postives = 227/273 (83.15%), Query Frame = 0
Query:   12 LVAAATGSTATRAVSSSAATPAPQQDLKLKASPK--GNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINK--GPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNK-EHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLA 280
            ++++++  T     S  AA      DLK  A PK    IK+FKVYRWDPEQ+QKPYLSTYPVDL +CGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNIDG NTLACLSYI++       KIYPLPHMYV+KDLVPDM NFY QY+SIEPWL+ +  + K+P + E+LQ++EDR KLDGMYECILCACCSTACPSYWW ADKYLGPAVL+QAYRWIEDSRD  T++RLE LDD+FKLYRCHTIMNCTKVCPKHLNPG+AIA IKKRLA
Sbjct:    1 MLSSSSTRTTKTLFSRFAARSFATADLKANAIPKQAPRIKYFKVYRWDPEQSQKPYLSTYPVDLANCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGVNTLACLSYIDQKDTSSATKIYPLPHMYVIKDLVPDMGNFYEQYRSIEPWLQPE--KGKEPGQAEYLQTREDRAKLDGMYECILCACCSTACPSYWWNADKYLGPAVLLQAYRWIEDSRDGSTKKRLEELDDAFKLYRCHTIMNCTKVCPKHLNPGKAIAQIKKRLA 271          
BLAST of NO01G05020 vs. NCBI_GenBank
Match: GAX93982.1 (elongation factor 2 [Pythium insidiosum])

HSP 1 Score: 411.0 bits (1055), Expect = 3.000e-111
Identity = 197/275 (71.64%), Postives = 220/275 (80.00%), Query Frame = 0
Query:    8 AGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH 283
            A  ++ A +T  T T  + + A + A   DLKLK +   N+K+FK+YRWDPE   KPY  TYPVDLDDCGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNIDG NTLACLS I K  +  KIYPLP MYV++DLVPDM NFY QY+SI+PWL  ++   K  N EHLQSKEDRKKLDGMYECILCACCST+CPSYWW  DKYLGPAVLMQA+RWIEDSRD  T ERL ALDDSFKLY+CHTIMNCTK CPK LNP RAI  IKKRLA++H
Sbjct: 3193 APEKVAAPSTAKTVT--LGARALSSAAPGDLKLKTNKPKNVKYFKIYRWDPESKGKPYECTYPVDLDDCGPMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNIDGGNTLACLSPIKKNNDVTKIYPLPXMYVIRDLVPDMNNFYDQYRSIKPWL--QSDVEKPANVEHLQSKEDRKKLDGMYECILCACCSTSCPSYWWNPDKYLGPAVLMQAFRWIEDSRDTKTEERLRALDDSFKLYKCHTIMNCTKTCPKGLNPARAIGKIKKRLASLH 3463          
BLAST of NO01G05020 vs. NCBI_GenBank
Match: GAX93983.1 (elongation factor 2 [Pythium insidiosum])

HSP 1 Score: 411.0 bits (1055), Expect = 3.000e-111
Identity = 197/275 (71.64%), Postives = 220/275 (80.00%), Query Frame = 0
Query:    8 AGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH 283
            A  ++ A +T  T T  + + A + A   DLKLK +   N+K+FK+YRWDPE   KPY  TYPVDLDDCGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNIDG NTLACLS I K  +  KIYPLP MYV++DLVPDM NFY QY+SI+PWL  ++   K  N EHLQSKEDRKKLDGMYECILCACCST+CPSYWW  DKYLGPAVLMQA+RWIEDSRD  T ERL ALDDSFKLY+CHTIMNCTK CPK LNP RAI  IKKRLA++H
Sbjct: 3237 APEKVAAPSTAKTVT--LGARALSSAAPGDLKLKTNKPKNVKYFKIYRWDPESKGKPYECTYPVDLDDCGPMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNIDGGNTLACLSPIKKNNDVTKIYPLPXMYVIRDLVPDMNNFYDQYRSIKPWL--QSDVEKPANVEHLQSKEDRKKLDGMYECILCACCSTSCPSYWWNPDKYLGPAVLMQAFRWIEDSRDTKTEERLRALDDSFKLYKCHTIMNCTKTCPKGLNPARAIGKIKKRLASLH 3507          
BLAST of NO01G05020 vs. NCBI_GenBank
Match: XP_009826543.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Aphanomyces astaci] >ETV84851.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Aphanomyces astaci])

HSP 1 Score: 410.6 bits (1054), Expect = 3.900e-111
Identity = 199/278 (71.58%), Postives = 228/278 (82.01%), Query Frame = 0
Query:    6 QQAGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKG-NIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH 283
            Q+   R   AAT S + RA+S++A+      DLKL+ S    N+K+FK+YRWDPE  +KPYL TYPVDL++CGPMVLDAL KIKNEQDP+LTFRRSCREGICGSCAMNIDG NTLACLS I+K  +  KIYPLPHMYV++DLVPDM NFYAQYKSI+PWL  ++   K  N E+LQSKEDRKKLDGMYECILCACCST+CPSYWW  DKYLGPAVLMQAYRWIEDSRD  T ERLE L+D++KLYRCHTIMNCTK CPKHLNP +AI  IKK+LA +H
Sbjct:    3 QRTAVRAARAATPS-SLRALSTAAS------DLKLQTSTTAKNVKYFKIYRWDPESKEKPYLCTYPVDLNECGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGGNTLACLSPIDKKKDTTKIYPLPHMYVIRDLVPDMNNFYAQYKSIKPWL--QSDVVKSDNTEYLQSKEDRKKLDGMYECILCACCSTSCPSYWWNPDKYLGPAVLMQAYRWIEDSRDTKTLERLEDLNDAYKLYRCHTIMNCTKTCPKHLNPAKAIGKIKKKLAVLH 271          
The following BLAST results are available for this feature:
BLAST of NO01G05020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29428.14.900e-15492.55succinate dehydrogenase iron sulfur protein [Nanno... [more]
XP_008870586.11.200e-11273.13succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
GAX17289.11.200e-11280.82succinate dehydrogenase (ubiquinone) iron-sulfur s... [more]
GAX18642.11.600e-11280.41succinate dehydrogenase (ubiquinone) iron-sulfur s... [more]
OQR83267.14.600e-11270.91succinate dehydrogenase iron-sulfur protein, mitoc... [more]
CBJ32043.17.900e-11278.81SDH2, succinate dehydrogenase subunit 2 [Ectocarpu... [more]
XP_002184001.13.000e-11173.26succinate dehydrogenase iron sulfur protein [Phaeo... [more]
GAX93982.13.000e-11171.64elongation factor 2 [Pythium insidiosum][more]
GAX93983.13.000e-11171.64elongation factor 2 [Pythium insidiosum][more]
XP_009826543.13.900e-11171.58succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007758NSK007758Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05020.1NO01G05020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577604gene_531Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100305g3gene1196Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05020.1NO01G05020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05020 ID=NO01G05020|Name=NO01G05020|organism=Nannochloropsis oceanica|type=gene|length=2794bp
CATGGTGAATAGGTCCTCTTCTGTAAGGTGTAGTTCGTCGTGTGAGACCA
GATAGAGAATGCTCATGCTTCGCTGCGCGAAGCAAGAGTTGGCGATGACC
CAGCCGCCTTTGAATGACCGCCCCGCCCCCTGTGCGCTTTGACTTTTCTG
AAGCCTTAACGCATGTTATCGTGCGGCGAGGCTAAGATGTAATGCCTGCC
TGCGAGGACACACGGCATTTTCATGCCATTGTGAGGCAATGCCATCATCG
TCATCATCAGTTTCTGGGCAAGCCTCCTCCTTCTCTTAACGTCCTTGCTT
CCTCAACTCCCACGTCAGTTCTTCTTGCATGTTCCTTTAGACTCATGCAC
CCACTCGCATCATAACGCGAGATACAAATACCAGCATTTCCACTGCAAGT
ACAACGATGAAGCGGCGGATGGCATTCTCTCGTGGATGCCTTAGCATCTC
ATGCCTCTGCGTAATCGAGGCCGCGGCACCCTCGCTCCTGGTTGCGGTAG
TTTGGGCCCTCAACTCAAGCACAACATTCACACGACAATACTCCCTCCCC
TGACTCACCACAGAAAAGAGCAGCATGCTGCGCCTTCATCAACAGGCTGG
GCGTCGGCTGGTGGCCGCGGCAACGGGGAGTACGGCCACGCGTGCAGTTT
CGTCCTCGGCCGCAACCCCGGCCCCGCAGCAAGACCTCAAGCTCAAGGCC
AGCCCAAAGGGGgtacgttgaagtggagggagggagagagggagggaggg
aggaaggtttgaaaggagagaggaacactcaaggatgaaagcacgaggga
gggggaagttgcggggatgtctctggtgtgactcacaagggccttcgtgg
tgcacgtccagaaagaaggagagattgtagagcagagagagaacagtcgc
gacatattgtctgatatcgctccattccacgcacacacacacacgctcat
acacatgcagAACATCAAGTTCTTCAAGGTCTACCGCTGGGACCCGGAGC
AGAACCAAAAGCCCTACCTATCTACCTATCCAGTCGACCTCGATGAgtaa
gtggagatgccccatgccacctccctcactccctccctccctcactccct
agcttgatccaccattccctccctccttcccttcctattctcatgcaaga
tgtctggtgccaatccgttcgttgggtccttgaaccctttcaaaggcatc
ttcacatctcacccctccctccctccctttctccctcccttcctttctcc
ctccctttctccctccctccctccctccctcagTTGTGGACCCATGGTCC
TGGATGCACTCTTCAAAATCAAGAACGAGCAAGACCCTTCGCTTACCTTC
CGCCGATCCTGCCGAGAGGGCATCTGTGGGTCATGCGCGATGAATATTGA
CGGCACCAACACGTTGGCCTGCCTATCGTACATTAACAAGGGACCGGAGC
CATGTAAGATTTACCCCTTGCCGCACATGTATGTCCTCAAGGACCTGGTA
CCGGACATGACGAATTTCTATGCGCAGTACAAGgtgagcgcgaggaaggg
agggagggagggtgggatgcttggccgactggtttactccacccgcggga
gcgctcattcttaccctcatttccttcctctgtccctccctcagAGCATC
GAGCCATGGCTCAAGGTGAAGGCCCCTGAGTCCAAGGACCCCAACAAGGA
GCACCTGCAGAGCAAGGAAGACAGAAAGAAGCTCGACGGCATGTACGAGT
GCATCCTCTGCGCGTGCTGCTCCACCGCCTGCCCGTCGTACTGGTGGGCA
GCCGACAAGTACCTGGGACCCGCGGTGTTGATGCAGGCCTATCGCTGGAT
CGAGGACTCGCGCGACGAATTCACTCGGGAGCGCCTGGAGGCCTTGGATG
ACTCGTTCAAGgtactttcagcctcctcccctcctctctttcccgcccat
tcctctttacgtctagcgtcatctcctcttgtcctctctccttttcctcc
ttttctccgcctgtatcatcaaacctccgattcctatcctccgttccata
aatctcacctttactcattctgccctaactctccctccctccctccctcc
cttcctccctccagCTCTATCGGTGCCACACTATCATGAACTGCACCAAG
GTGTGTCCTAAGCATCTGAATCCCGGCCGGGCCATCGCCCACATTAAGAA
GCGATTGGCGGCAGTGCACTAGAGGGGGGCAGACAAGGTGGGAGGAAAAA
GGATTATATCATAATATGAAAAAAGAGTCGTAATACTATGAAAAAAAGGG
AAGTTGGGAAGGACCAGAGAGGGAGGTATGACAAAAGTTTTGTGCAGCGA
CACGGATGTTGTTGCTTGAGCGAGGATTAGAGAGGGAGGATGAGAGAGAG
CAGGGGGACTGCGCGGGAGTAGAAGCACATGCCCTCCATGCCCTCGAATG
AGATGATCGAAGGGGGAAAGTGAGGAAGGATCGATAACGACGAAGATGAC
GATCACGAACTACTATGACGGACATGACCTCGGGGAGCCCACGGGCCCAC
AAGCGCAAGGAAGGGACTCCTTTCAGAGGCAATTAACATATTGTTTCTCA
TCTATCCGTGATAGACTCAGTTTTGGAGAGTGTACATCGTTGATCGTGTT
TCGGTGTTCATCAACTGCTTTCTTTGTTTCTTTCTTTCCGTCCCTCTCCT
TCCATCGCAGGGACAGAGCGGAGACACACATAACAAATTATTACTATGAA
GTCAAAGACACCGCCTGCCTCTTTTCTTTGGCCGTTTTGTTCGC
back to top

protein sequence of NO01G05020.1

>NO01G05020.1-protein ID=NO01G05020.1-protein|Name=NO01G05020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MLRLHQQAGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKGNIKF
FKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRS
CREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDM
TNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACC
STACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYR
CHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH*
back to top
Synonyms
Publications