NO01G05020.1, NO01G05020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05020.1
Unique NameNO01G05020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1995
Alignment locationchr1:1334207..1337000 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1334207..1337000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05020.1 vs.
Match: EWM29428.1 (succinate dehydrogenase iron sulfur protein [Nannochloropsis gaditana])

HSP 1 Score: 553.1 bits (1424), Expect = 4.900e-154
Identity = 261/282 (92.55%), Postives = 268/282 (95.04%), Query Frame = 0 
Query:    1 MLRLHQQAGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDMTNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH 283
            MLRL Q AGRR+ AA  GS A RAVSSSA TPAPQQDLKLK+S KGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDP+LTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEP KIYPLPHMYVLKDLVPDMTNFY QYKSIEPWL+ KA E+KDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDE+T+ERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAA H
Sbjct:    1 MLRLQQHAGRRIAAAVVGSPAFRAVSSSATTPAPQQDLKLKSSAKGNIKFFKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPTKIYPLPHMYVLKDLVPDMTNFYDQYKSIEPWLQTKAVEAKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEYTKERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAATH 282
The following BLAST results are available for this feature:
BLAST of NO01G05020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29428.14.900e-15492.55succinate dehydrogenase iron sulfur protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05020NO01G05020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05020.1NO01G05020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05020.1.cds1NO01G05020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05020.1.cds2NO01G05020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05020.1.cds3NO01G05020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05020.1.cds4NO01G05020.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05020.1.cds5NO01G05020.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05020.1 ID=NO01G05020.1|Name=NO01G05020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1995bp
CATGGTGAATAGGTCCTCTTCTGTAAGGTGTAGTTCGTCGTGTGAGACCA
GATAGAGAATGCTCATGCTTCGCTGCGCGAAGCAAGAGTTGGCGATGACC
CAGCCGCCTTTGAATGACCGCCCCGCCCCCTGTGCGCTTTGACTTTTCTG
AAGCCTTAACGCATGTTATCGTGCGGCGAGGCTAAGATGTAATGCCTGCC
TGCGAGGACACACGGCATTTTCATGCCATTGTGAGGCAATGCCATCATCG
TCATCATCAGTTTCTGGGCAAGCCTCCTCCTTCTCTTAACGTCCTTGCTT
CCTCAACTCCCACGTCAGTTCTTCTTGCATGTTCCTTTAGACTCATGCAC
CCACTCGCATCATAACGCGAGATACAAATACCAGCATTTCCACTGCAAGT
ACAACGATGAAGCGGCGGATGGCATTCTCTCGTGGATGCCTTAGCATCTC
ATGCCTCTGCGTAATCGAGGCCGCGGCACCCTCGCTCCTGGTTGCGGTAG
TTTGGGCCCTCAACTCAAGCACAACATTCACACGACAATACTCCCTCCCC
TGACTCACCACAGAAAAGAGCAGCATGCTGCGCCTTCATCAACAGGCTGG
GCGTCGGCTGGTGGCCGCGGCAACGGGGAGTACGGCCACGCGTGCAGTTT
CGTCCTCGGCCGCAACCCCGGCCCCGCAGCAAGACCTCAAGCTCAAGGCC
AGCCCAAAGGGGAACATCAAGTTCTTCAAGGTCTACCGCTGGGACCCGGA
GCAGAACCAAAAGCCCTACCTATCTACCTATCCAGTCGACCTCGATGATT
GTGGACCCATGGTCCTGGATGCACTCTTCAAAATCAAGAACGAGCAAGAC
CCTTCGCTTACCTTCCGCCGATCCTGCCGAGAGGGCATCTGTGGGTCATG
CGCGATGAATATTGACGGCACCAACACGTTGGCCTGCCTATCGTACATTA
ACAAGGGACCGGAGCCATGTAAGATTTACCCCTTGCCGCACATGTATGTC
CTCAAGGACCTGGTACCGGACATGACGAATTTCTATGCGCAGTACAAGAG
CATCGAGCCATGGCTCAAGGTGAAGGCCCCTGAGTCCAAGGACCCCAACA
AGGAGCACCTGCAGAGCAAGGAAGACAGAAAGAAGCTCGACGGCATGTAC
GAGTGCATCCTCTGCGCGTGCTGCTCCACCGCCTGCCCGTCGTACTGGTG
GGCAGCCGACAAGTACCTGGGACCCGCGGTGTTGATGCAGGCCTATCGCT
GGATCGAGGACTCGCGCGACGAATTCACTCGGGAGCGCCTGGAGGCCTTG
GATGACTCGTTCAAGCTCTATCGGTGCCACACTATCATGAACTGCACCAA
GGTGTGTCCTAAGCATCTGAATCCCGGCCGGGCCATCGCCCACATTAAGA
AGCGATTGGCGGCAGTGCACTAGAGGGGGGCAGACAAGGTGGGAGGAAAA
AGGATTATATCATAATATGAAAAAAGAGTCGTAATACTATGAAAAAAAGG
GAAGTTGGGAAGGACCAGAGAGGGAGGTATGACAAAAGTTTTGTGCAGCG
ACACGGATGTTGTTGCTTGAGCGAGGATTAGAGAGGGAGGATGAGAGAGA
GCAGGGGGACTGCGCGGGAGTAGAAGCACATGCCCTCCATGCCCTCGAAT
GAGATGATCGAAGGGGGAAAGTGAGGAAGGATCGATAACGACGAAGATGA
CGATCACGAACTACTATGACGGACATGACCTCGGGGAGCCCACGGGCCCA
CAAGCGCAAGGAAGGGACTCCTTTCAGAGGCAATTAACATATTGTTTCTC
ATCTATCCGTGATAGACTCAGTTTTGGAGAGTGTACATCGTTGATCGTGT
TTCGGTGTTCATCAACTGCTTTCTTTGTTTCTTTCTTTCCGTCCCTCTCC
TTCCATCGCAGGGACAGAGCGGAGACACACATAACAAATTATTACTATGA
AGTCAAAGACACCGCCTGCCTCTTTTCTTTGGCCGTTTTGTTCGC
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protein sequence of NO01G05020.1

>NO01G05020.1-protein ID=NO01G05020.1-protein|Name=NO01G05020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MLRLHQQAGRRLVAAATGSTATRAVSSSAATPAPQQDLKLKASPKGNIKF
FKVYRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPSLTFRRS
CREGICGSCAMNIDGTNTLACLSYINKGPEPCKIYPLPHMYVLKDLVPDM
TNFYAQYKSIEPWLKVKAPESKDPNKEHLQSKEDRKKLDGMYECILCACC
STACPSYWWAADKYLGPAVLMQAYRWIEDSRDEFTRERLEALDDSFKLYR
CHTIMNCTKVCPKHLNPGRAIAHIKKRLAAVH*
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mRNA from alignment at chr1:1334207..1337000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05020.1 ID=NO01G05020.1|Name=NO01G05020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2794bp|location=Sequence derived from alignment at chr1:1334207..1337000- (Nannochloropsis oceanica)
CATGGTGAATAGGTCCTCTTCTGTAAGGTGTAGTTCGTCGTGTGAGACCA
GATAGAGAATGCTCATGCTTCGCTGCGCGAAGCAAGAGTTGGCGATGACC
CAGCCGCCTTTGAATGACCGCCCCGCCCCCTGTGCGCTTTGACTTTTCTG
AAGCCTTAACGCATGTTATCGTGCGGCGAGGCTAAGATGTAATGCCTGCC
TGCGAGGACACACGGCATTTTCATGCCATTGTGAGGCAATGCCATCATCG
TCATCATCAGTTTCTGGGCAAGCCTCCTCCTTCTCTTAACGTCCTTGCTT
CCTCAACTCCCACGTCAGTTCTTCTTGCATGTTCCTTTAGACTCATGCAC
CCACTCGCATCATAACGCGAGATACAAATACCAGCATTTCCACTGCAAGT
ACAACGATGAAGCGGCGGATGGCATTCTCTCGTGGATGCCTTAGCATCTC
ATGCCTCTGCGTAATCGAGGCCGCGGCACCCTCGCTCCTGGTTGCGGTAG
TTTGGGCCCTCAACTCAAGCACAACATTCACACGACAATACTCCCTCCCC
TGACTCACCACAGAAAAGAGCAGCATGCTGCGCCTTCATCAACAGGCTGG
GCGTCGGCTGGTGGCCGCGGCAACGGGGAGTACGGCCACGCGTGCAGTTT
CGTCCTCGGCCGCAACCCCGGCCCCGCAGCAAGACCTCAAGCTCAAGGCC
AGCCCAAAGGGGGTACGTTGAAGTGGAGGGAGGGAGAGAGGGAGGGAGGG
AGGAAGGTTTGAAAGGAGAGAGGAACACTCAAGGATGAAAGCACGAGGGA
GGGGGAAGTTGCGGGGATGTCTCTGGTGTGACTCACAAGGGCCTTCGTGG
TGCACGTCCAGAAAGAAGGAGAGATTGTAGAGCAGAGAGAGAACAGTCGC
GACATATTGTCTGATATCGCTCCATTCCACGCACACACACACACGCTCAT
ACACATGCAGAACATCAAGTTCTTCAAGGTCTACCGCTGGGACCCGGAGC
AGAACCAAAAGCCCTACCTATCTACCTATCCAGTCGACCTCGATGAGTAA
GTGGAGATGCCCCATGCCACCTCCCTCACTCCCTCCCTCCCTCACTCCCT
AGCTTGATCCACCATTCCCTCCCTCCTTCCCTTCCTATTCTCATGCAAGA
TGTCTGGTGCCAATCCGTTCGTTGGGTCCTTGAACCCTTTCAAAGGCATC
TTCACATCTCACCCCTCCCTCCCTCCCTTTCTCCCTCCCTTCCTTTCTCC
CTCCCTTTCTCCCTCCCTCCCTCCCTCCCTCAGTTGTGGACCCATGGTCC
TGGATGCACTCTTCAAAATCAAGAACGAGCAAGACCCTTCGCTTACCTTC
CGCCGATCCTGCCGAGAGGGCATCTGTGGGTCATGCGCGATGAATATTGA
CGGCACCAACACGTTGGCCTGCCTATCGTACATTAACAAGGGACCGGAGC
CATGTAAGATTTACCCCTTGCCGCACATGTATGTCCTCAAGGACCTGGTA
CCGGACATGACGAATTTCTATGCGCAGTACAAGGTGAGCGCGAGGAAGGG
AGGGAGGGAGGGTGGGATGCTTGGCCGACTGGTTTACTCCACCCGCGGGA
GCGCTCATTCTTACCCTCATTTCCTTCCTCTGTCCCTCCCTCAGAGCATC
GAGCCATGGCTCAAGGTGAAGGCCCCTGAGTCCAAGGACCCCAACAAGGA
GCACCTGCAGAGCAAGGAAGACAGAAAGAAGCTCGACGGCATGTACGAGT
GCATCCTCTGCGCGTGCTGCTCCACCGCCTGCCCGTCGTACTGGTGGGCA
GCCGACAAGTACCTGGGACCCGCGGTGTTGATGCAGGCCTATCGCTGGAT
CGAGGACTCGCGCGACGAATTCACTCGGGAGCGCCTGGAGGCCTTGGATG
ACTCGTTCAAGGTACTTTCAGCCTCCTCCCCTCCTCTCTTTCCCGCCCAT
TCCTCTTTACGTCTAGCGTCATCTCCTCTTGTCCTCTCTCCTTTTCCTCC
TTTTCTCCGCCTGTATCATCAAACCTCCGATTCCTATCCTCCGTTCCATA
AATCTCACCTTTACTCATTCTGCCCTAACTCTCCCTCCCTCCCTCCCTCC
CTTCCTCCCTCCAGCTCTATCGGTGCCACACTATCATGAACTGCACCAAG
GTGTGTCCTAAGCATCTGAATCCCGGCCGGGCCATCGCCCACATTAAGAA
GCGATTGGCGGCAGTGCACTAGAGGGGGGCAGACAAGGTGGGAGGAAAAA
GGATTATATCATAATATGAAAAAAGAGTCGTAATACTATGAAAAAAAGGG
AAGTTGGGAAGGACCAGAGAGGGAGGTATGACAAAAGTTTTGTGCAGCGA
CACGGATGTTGTTGCTTGAGCGAGGATTAGAGAGGGAGGATGAGAGAGAG
CAGGGGGACTGCGCGGGAGTAGAAGCACATGCCCTCCATGCCCTCGAATG
AGATGATCGAAGGGGGAAAGTGAGGAAGGATCGATAACGACGAAGATGAC
GATCACGAACTACTATGACGGACATGACCTCGGGGAGCCCACGGGCCCAC
AAGCGCAAGGAAGGGACTCCTTTCAGAGGCAATTAACATATTGTTTCTCA
TCTATCCGTGATAGACTCAGTTTTGGAGAGTGTACATCGTTGATCGTGTT
TCGGTGTTCATCAACTGCTTTCTTTGTTTCTTTCTTTCCGTCCCTCTCCT
TCCATCGCAGGGACAGAGCGGAGACACACATAACAAATTATTACTATGAA
GTCAAAGACACCGCCTGCCTCTTTTCTTTGGCCGTTTTGTTCGC
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Coding sequence (CDS) from alignment at chr1:1334207..1337000-

>NO01G05020.1 ID=NO01G05020.1|Name=NO01G05020.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr1:1334207..1337000- (Nannochloropsis oceanica)
ATGCTGCGCCTTCATCAACAGGCTGGGCGTCGGCTGGTGGCCGCGGCAAC
GGGGAGTACGGCCACGCGTGCAGTTTCGTCCTCGGCCGCAACCCCGGCCC
CGCAGCAAGACCTCAAGCTCAAGGCCAGCCCAAAGGGGAACATCAAGTTC
TTCAAGGTCTACCGCTGGGACCCGGAGCAGAACCAAAAGCCCTACCTATC
TACCTATCCAGTCGACCTCGATGATTGTGGACCCATGGTCCTGGATGCAC
TCTTCAAAATCAAGAACGAGCAAGACCCTTCGCTTACCTTCCGCCGATCC
TGCCGAGAGGGCATCTGTGGGTCATGCGCGATGAATATTGACGGCACCAA
CACGTTGGCCTGCCTATCGTACATTAACAAGGGACCGGAGCCATGTAAGA
TTTACCCCTTGCCGCACATGTATGTCCTCAAGGACCTGGTACCGGACATG
ACGAATTTCTATGCGCAGTACAAGAGCATCGAGCCATGGCTCAAGGTGAA
GGCCCCTGAGTCCAAGGACCCCAACAAGGAGCACCTGCAGAGCAAGGAAG
ACAGAAAGAAGCTCGACGGCATGTACGAGTGCATCCTCTGCGCGTGCTGC
TCCACCGCCTGCCCGTCGTACTGGTGGGCAGCCGACAAGTACCTGGGACC
CGCGGTGTTGATGCAGGCCTATCGCTGGATCGAGGACTCGCGCGACGAAT
TCACTCGGGAGCGCCTGGAGGCCTTGGATGACTCGTTCAAGCTCTATCGG
TGCCACACTATCATGAACTGCACCAAGGTGTGTCCTAAGCATCTGAATCC
CGGCCGGGCCATCGCCCACATTAAGAAGCGATTGGCGGCAGTGCACTAG
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Synonyms
Publications