NO01G04600, NO01G04600 (gene) Nannochloropsis oceanica

Overview
NameNO01G04600
Unique NameNO01G04600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1452
Alignment locationchr1:1216237..1217688 -

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin unc44
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1216237..1217688 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO01G04600 vs. NCBI_GenBank
Match: XP_005854114.1 (ankyrin [Nannochloropsis gaditana CCMP526] >EKU22249.1 ankyrin [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 356.7 bits (914), Expect = 1.100e-94
Identity = 236/278 (84.89%), Postives = 250/278 (89.93%), Query Frame = 0 
Query:    1 MDENSVGALFSAAKQGRVEELATLLDEHPELVHARSDPSHHHTLLILAAWHGRTSVATLLLDRGADPNAVNLEGRTPLWFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARMEADARDTQEQHQDEVRRLLDEQNKDGCSGLWFAAGHGRAEMVAFLLRRGADFLQADCDGYTALHVARLRGYEDCALLLEDTERAYWLYQARRLYDDATTLRTLPRAGTRARFQQRRQQLTPKYLRVRADQGLEFPSPRVVGAEME 279
            MDE+SVGALFSAAKQGRVEELA+LLDEHPELVHARSDP+HHHTLLILAAWHGRTSVA LLLDRGADPNAVNLEGRTPLWFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             H DEVRRLLDEQNKDGCSGLWFAAGHGRA MV  LL RGADFLQADCDGYTALHVARLRGY+DCALLLE+TERAYWLYQARRL+DD  TL +LPRAGTRA FQ+RRQQLTP YLR+RA+ G +FPSPRV+  E++
Sbjct:    1 MDEHSVGALFSAAKQGRVEELASLLDEHPELVHARSDPAHHHTLLILAAWHGRTSVAALLLDRGADPNAVNLEGRTPLWFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDGVPVAPH-DEVRRLLDEQNKDGCSGLWFAAGHGRASMVRLLLSRGADFLQADCDGYTALHVARLRGYDDCALLLEETERAYWLYQARRLFDDTATLASLPRAGTRACFQRRRQQLTPNYLRIRAELGEKFPSPRVLNQEVK 277
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BLAST of NO01G04600 vs. NCBI_GenBank
Match: EWM29414.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 356.7 bits (914), Expect = 1.100e-94
Identity = 236/278 (84.89%), Postives = 250/278 (89.93%), Query Frame = 0 
Query:    1 MDENSVGALFSAAKQGRVEELATLLDEHPELVHARSDPSHHHTLLILAAWHGRTSVATLLLDRGADPNAVNLEGRTPLWFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARMEADARDTQEQHQDEVRRLLDEQNKDGCSGLWFAAGHGRAEMVAFLLRRGADFLQADCDGYTALHVARLRGYEDCALLLEDTERAYWLYQARRLYDDATTLRTLPRAGTRARFQQRRQQLTPKYLRVRADQGLEFPSPRVVGAEME 279
            MDE+SVGALFSAAKQGRVEELA+LLDEHPELVHARSDP+HHHTLLILAAWHGRTSVA LLLDRGADPNAVNLEGRTPLWFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             H DEVRRLLDEQNKDGCSGLWFAAGHGRA MV  LL RGADFLQADCDGYTALHVARLRGY+DCALLLE+TERAYWLYQARRL+DD  TL +LPRAGTRA FQ+RRQQLTP YLR+RA+ G +FPSPRV+  E++
Sbjct:    1 MDEHSVGALFSAAKQGRVEELASLLDEHPELVHARSDPAHHHTLLILAAWHGRTSVAALLLDRGADPNAVNLEGRTPLWFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDGVPVAPH-DEVRRLLDEQNKDGCSGLWFAAGHGRASMVRLLLSRGADFLQADCDGYTALHVARLRGYDDCALLLEETERAYWLYQARRLFDDTATLASLPRAGTRACFQRRRQQLTPNYLRIRAELGEKFPSPRVLNQEVK 277
[Close]
BLAST of NO01G04600 vs. NCBI_GenBank
Match: EWM25377.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 67.0 bits (162), Expect = 1.800e-7
Identity = 38/106 (35.85%), Postives = 53/106 (50.00%), Query Frame = 0 
Query:  155 QNKDGCSGLWFAAGHGRAEMVAFLLRRGADFLQADCDGYTALHVARLRGYEDCALLLEDTERAYWLYQARRLYDDATTLRTLPRAGTRARFQQRRQQLTPKYLRVR 261
            Q+   C+ LW+A    R ++V  LL RGADF   D  G T L +A  + +  C L +++  RA  L++ R L+D    L  LP + TR    Q R    P  LR R
Sbjct:  173 QSNYKCTALWWACRSDREDVVRLLLSRGADFTLRDWKGRTPLEIALAKNHPGCVLAVQEAYRALALFKYRTLHDAEQCLLRLPLSRTRGSTLQTRVSCVPACLRAR 278
The following BLAST results are available for this feature:
BLAST of NO01G04600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854114.11.100e-9484.89ankyrin [Nannochloropsis gaditana CCMP526] >EKU222... [more]
EWM29414.11.100e-9484.89ankyrin unc44 [Nannochloropsis gaditana][more]
EWM25377.11.800e-735.85ankyrin unc44 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04600.1NO01G04600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577431gene_480Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04600.1NO01G04600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04600 ID=NO01G04600|Name=NO01G04600|organism=Nannochloropsis oceanica|type=gene|length=1452bp
ATGGATGAAAACAGCGTCGGCGCGCTCTTTTCCGCGGCCAAGCAAGGCCG
GGTCGAAGAACTTGCCACCCTCCTAGACGAACACCCCGAGCTAGTACACG
CTCGTAGCGACCCTTCTCACCATCACACCCTCCTCATCCTTGCGGCCTGG
CATGGCCGCACCTCCGTCGCCACCCTCCTTCTCGACCGAGGCGCGGACCC
GAACGCTGTCAACCTGGAAGGACGTACTCCTCTGTGGTTTTCTTGCTGTG
GTGGGCACGTGGAAACTGCCTCGTTGCTATTGGCTCGTGGGGGAAAGCCC
AGCGTGAGGAAGGAAGGGGGGTCGACGGCACTGATGGCAGCAGCCTGGAC
GGGGCATTTACCCGTGGCGAGGTTAATTTTGGACCACGCGGCGCGGATGG
AGGCGGATGCGAGGGATACCCAAGAGCAGCATCAGGACGAGGTACGGCGG
TTGTTGGATGAGCAGAACAAGGACGGATGTTCAGGGTTGTGGTTTGCAGC
GGGCCATGGGAGGGCGGAGATGGTGGCTTTCTTATTGAGGCGCGGGGCAG
ATTTTCTGCAGGCGGATTGTGATGGGTACACGGCTTTGCACGTGGCACGG
TTGAGGGGGTACGAGGATTGTGCGTTGTTGTTGGAGGACACAGAGAGGGC
TTACTGGCTCTACCAGGCTCGGCGACTGTATGACGATGCCACGACGTTAC
GAACTTTGCCACGGGCGGGGACTCGGGCAAGGTTTCAACAGCGACGGCAG
CAGCTGACACCAAAGTATTTGAGGGTAAGGGCGGATCAAGGGTTGGAGTT
CCCATCGCCCCGGGTAGTGGGAGCGGAGATGGAGGCGCTTGAGGCAGCAG
TTGCAGCAGCAGCAGCAGCGGGGATGCTTTCGCCCTCATCGCCGCCGTCG
TGCTTGTCGTCCAGGGCGGTGGTAGAAGGAGAAGAAGCAGCTGATGCAGC
ACCAGCAGATGCAACTATGGGAGGCGACAATGATGATGGTGGTGGTGGGC
CGGCAGACTGTAGGAGGAGCGGTATGAGGAGAAAGGCTGCTCAGGAGGAG
GAGGAATGTGGATTTGCGTCTTTGGATTCTTCCGCCTCGTCCTGCTGGAA
TAACATATCGGGAGGGGAAGGGACGAGTGGAATTGTTCGTGACGTATGTA
AGCACAGGCGTGACCGAAAGCGAAAACGCTCGGGCTCTGCGTCGGATTCC
TTTTCCTTTACCGGTGTATCCTCCTCCTCCACCTCCTCCTCCTCCTCTGC
CTCCTCGAGCCTAGAAGCCGCCGGAGCAGCGACACCAACAGCGATGAAGT
CCACACCTACGTCCTCGGCGGAGGCGGCCGCAAAAGCAGCAGCCGCGGAG
GAACGTCAGGAGGTCTTGCAATTTGTCGTCCAGGAGCTGAAGGGGGAGCT
GTTCGTTGAACTGCTGGGGTTTGTCACGGCGGCCGCGCCGCAAGGGCCTT
GA
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protein sequence of NO01G04600.1

>NO01G04600.1-protein ID=NO01G04600.1-protein|Name=NO01G04600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=484bp
MDENSVGALFSAAKQGRVEELATLLDEHPELVHARSDPSHHHTLLILAAW
HGRTSVATLLLDRGADPNAVNLEGRTPLWFSCCGGHVETASLLLARGGKP
SVRKEGGSTALMAAAWTGHLPVARLILDHAARMEADARDTQEQHQDEVRR
LLDEQNKDGCSGLWFAAGHGRAEMVAFLLRRGADFLQADCDGYTALHVAR
LRGYEDCALLLEDTERAYWLYQARRLYDDATTLRTLPRAGTRARFQQRRQ
QLTPKYLRVRADQGLEFPSPRVVGAEMEALEAAVAAAAAAGMLSPSSPPS
CLSSRAVVEGEEAADAAPADATMGGDNDDGGGGPADCRRSGMRRKAAQEE
EECGFASLDSSASSCWNNISGGEGTSGIVRDVCKHRRDRKRKRSGSASDS
FSFTGVSSSSTSSSSSASSSLEAAGAATPTAMKSTPTSSAEAAAKAAAAE
ERQEVLQFVVQELKGELFVELLGFVTAAAPQGP*
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Synonyms
Publications