NO01G04600.1, NO01G04600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04600.1
Unique NameNO01G04600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1452
Alignment locationchr1:1216237..1217688 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1216237..1217688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04600.1 vs.
Match: EWM29414.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 533.5 bits (1373), Expect = 6.900e-148
Identity = 319/494 (64.57%), Postives = 356/494 (72.06%), Query Frame = 0 
Query:    1 MDENSVGALFSAAKQGRVEELATLLDEHPELVHARSDPSHHHTLLILAAWHGRTSVATLLLDRGADPNAVNLEGRTPLWFSCCGGHVETASLLLARGGKPSVRKEGGSTALMAAAWTGHLPVARLILDHAARMEADARDTQEQHQDEVRRLLDEQNKDGCSGLWFAAGHGRAEMVAFLLRRGADFLQADCDGYTALHVARLRGYEDCALLLEDTERAYWLYQARRLYDDATTLRTLPRAGTRARFQQRRQQLTPKYLRVRADQGLEFPSPRVVGAEMEALEAAVAAAAAAGMLSPSS-PPSCLSSRAVVEGEEAADAAPADATMGGDNDDGGGGP--ADCRRSGMRRKAAQEEEEC--------GFASLDSSASSCWNNISGGEGTSGIVRDVCKHRRDRKRKRSGSASDSFSFTGVSSSSTSSSSSASSSLEAAGAATPTAMKSTPTSSAEAAAKAAAAEERQEVLQFVVQELKGELFVELLGFVTAAAPQGP 484
            MDE+SVGALFSAAKQGRVEELA+LLDEHPELVHARSDP+HHHTLLILAAWHGRTSVA LLLDRGADPNAVNLEGRTPLWFSCCGGHVETA+LLL+RG KPSVRKEGGST+LMAAAWTGHLPVARLILDHAAR  ++         DEVRRLLDEQNKDGCSGLWFAAGHGRA MV  LL RGADFLQADCDGYTALHVARLRGY+DCALLLE+TERAYWLYQARRL+DD  TL +LPRAGTRA FQ+RRQQLTP YLR+RA+ G +FPSPRV+  E++    +     A G   PS   P+   S A +EG  + D    D             P  A  R + +          C         F+S  SS SS            G +       R R  KR  S    F+      + +S+SSS +S +EAAGAATPTA KS PTS AEAAAKAAAAEERQEVLQ+VVQ+LK ELFVEL+GF+TAAAPQ P
Sbjct:    1 MDEHSVGALFSAAKQGRVEELASLLDEHPELVHARSDPAHHHTLLILAAWHGRTSVAALLLDRGADPNAVNLEGRTPLWFSCCGGHVETAALLLSRGAKPSVRKEGGSTSLMAAAWTGHLPVARLILDHAAR-GSEGDGVPVAPHDEVRRLLDEQNKDGCSGLWFAAGHGRASMVRLLLSRGADFLQADCDGYTALHVARLRGYDDCALLLEETERAYWLYQARRLFDDTATLASLPRAGTRACFQRRRQQLTPNYLRIRAELGEKFPSPRVLNQEVKGELGSEHREEAHGYRCPSPFSPAEELSEAGLEG-ASCDCKYLDGRRSSARKRMREDPHAAVSRDNAVSPPCPSSTNPCFVAAASSSSFSSSSSSVSSAGEEDQEAFARGGGMDPGRAGTRTRGSKRKRSNCHPFAL-----AHSSTSSSDTSCMEAAGAATPTATKSIPTSLAEAAAKAAAAEERQEVLQYVVQDLKSELFVELVGFITAAAPQHP 487
The following BLAST results are available for this feature:
BLAST of NO01G04600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29414.16.900e-14864.57ankyrin unc44 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04600NO01G04600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04600.1NO01G04600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04600.1.cds1NO01G04600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04600.1 ID=NO01G04600.1|Name=NO01G04600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp
ATGGATGAAAACAGCGTCGGCGCGCTCTTTTCCGCGGCCAAGCAAGGCCG
GGTCGAAGAACTTGCCACCCTCCTAGACGAACACCCCGAGCTAGTACACG
CTCGTAGCGACCCTTCTCACCATCACACCCTCCTCATCCTTGCGGCCTGG
CATGGCCGCACCTCCGTCGCCACCCTCCTTCTCGACCGAGGCGCGGACCC
GAACGCTGTCAACCTGGAAGGACGTACTCCTCTGTGGTTTTCTTGCTGTG
GTGGGCACGTGGAAACTGCCTCGTTGCTATTGGCTCGTGGGGGAAAGCCC
AGCGTGAGGAAGGAAGGGGGGTCGACGGCACTGATGGCAGCAGCCTGGAC
GGGGCATTTACCCGTGGCGAGGTTAATTTTGGACCACGCGGCGCGGATGG
AGGCGGATGCGAGGGATACCCAAGAGCAGCATCAGGACGAGGTACGGCGG
TTGTTGGATGAGCAGAACAAGGACGGATGTTCAGGGTTGTGGTTTGCAGC
GGGCCATGGGAGGGCGGAGATGGTGGCTTTCTTATTGAGGCGCGGGGCAG
ATTTTCTGCAGGCGGATTGTGATGGGTACACGGCTTTGCACGTGGCACGG
TTGAGGGGGTACGAGGATTGTGCGTTGTTGTTGGAGGACACAGAGAGGGC
TTACTGGCTCTACCAGGCTCGGCGACTGTATGACGATGCCACGACGTTAC
GAACTTTGCCACGGGCGGGGACTCGGGCAAGGTTTCAACAGCGACGGCAG
CAGCTGACACCAAAGTATTTGAGGGTAAGGGCGGATCAAGGGTTGGAGTT
CCCATCGCCCCGGGTAGTGGGAGCGGAGATGGAGGCGCTTGAGGCAGCAG
TTGCAGCAGCAGCAGCAGCGGGGATGCTTTCGCCCTCATCGCCGCCGTCG
TGCTTGTCGTCCAGGGCGGTGGTAGAAGGAGAAGAAGCAGCTGATGCAGC
ACCAGCAGATGCAACTATGGGAGGCGACAATGATGATGGTGGTGGTGGGC
CGGCAGACTGTAGGAGGAGCGGTATGAGGAGAAAGGCTGCTCAGGAGGAG
GAGGAATGTGGATTTGCGTCTTTGGATTCTTCCGCCTCGTCCTGCTGGAA
TAACATATCGGGAGGGGAAGGGACGAGTGGAATTGTTCGTGACGTATGTA
AGCACAGGCGTGACCGAAAGCGAAAACGCTCGGGCTCTGCGTCGGATTCC
TTTTCCTTTACCGGTGTATCCTCCTCCTCCACCTCCTCCTCCTCCTCTGC
CTCCTCGAGCCTAGAAGCCGCCGGAGCAGCGACACCAACAGCGATGAAGT
CCACACCTACGTCCTCGGCGGAGGCGGCCGCAAAAGCAGCAGCCGCGGAG
GAACGTCAGGAGGTCTTGCAATTTGTCGTCCAGGAGCTGAAGGGGGAGCT
GTTCGTTGAACTGCTGGGGTTTGTCACGGCGGCCGCGCCGCAAGGGCCTT
GA
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protein sequence of NO01G04600.1

>NO01G04600.1-protein ID=NO01G04600.1-protein|Name=NO01G04600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=484bp
MDENSVGALFSAAKQGRVEELATLLDEHPELVHARSDPSHHHTLLILAAW
HGRTSVATLLLDRGADPNAVNLEGRTPLWFSCCGGHVETASLLLARGGKP
SVRKEGGSTALMAAAWTGHLPVARLILDHAARMEADARDTQEQHQDEVRR
LLDEQNKDGCSGLWFAAGHGRAEMVAFLLRRGADFLQADCDGYTALHVAR
LRGYEDCALLLEDTERAYWLYQARRLYDDATTLRTLPRAGTRARFQQRRQ
QLTPKYLRVRADQGLEFPSPRVVGAEMEALEAAVAAAAAAGMLSPSSPPS
CLSSRAVVEGEEAADAAPADATMGGDNDDGGGGPADCRRSGMRRKAAQEE
EECGFASLDSSASSCWNNISGGEGTSGIVRDVCKHRRDRKRKRSGSASDS
FSFTGVSSSSTSSSSSASSSLEAAGAATPTAMKSTPTSSAEAAAKAAAAE
ERQEVLQFVVQELKGELFVELLGFVTAAAPQGP*
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mRNA from alignment at chr1:1216237..1217688-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04600.1 ID=NO01G04600.1|Name=NO01G04600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp|location=Sequence derived from alignment at chr1:1216237..1217688- (Nannochloropsis oceanica)
ATGGATGAAAACAGCGTCGGCGCGCTCTTTTCCGCGGCCAAGCAAGGCCG
GGTCGAAGAACTTGCCACCCTCCTAGACGAACACCCCGAGCTAGTACACG
CTCGTAGCGACCCTTCTCACCATCACACCCTCCTCATCCTTGCGGCCTGG
CATGGCCGCACCTCCGTCGCCACCCTCCTTCTCGACCGAGGCGCGGACCC
GAACGCTGTCAACCTGGAAGGACGTACTCCTCTGTGGTTTTCTTGCTGTG
GTGGGCACGTGGAAACTGCCTCGTTGCTATTGGCTCGTGGGGGAAAGCCC
AGCGTGAGGAAGGAAGGGGGGTCGACGGCACTGATGGCAGCAGCCTGGAC
GGGGCATTTACCCGTGGCGAGGTTAATTTTGGACCACGCGGCGCGGATGG
AGGCGGATGCGAGGGATACCCAAGAGCAGCATCAGGACGAGGTACGGCGG
TTGTTGGATGAGCAGAACAAGGACGGATGTTCAGGGTTGTGGTTTGCAGC
GGGCCATGGGAGGGCGGAGATGGTGGCTTTCTTATTGAGGCGCGGGGCAG
ATTTTCTGCAGGCGGATTGTGATGGGTACACGGCTTTGCACGTGGCACGG
TTGAGGGGGTACGAGGATTGTGCGTTGTTGTTGGAGGACACAGAGAGGGC
TTACTGGCTCTACCAGGCTCGGCGACTGTATGACGATGCCACGACGTTAC
GAACTTTGCCACGGGCGGGGACTCGGGCAAGGTTTCAACAGCGACGGCAG
CAGCTGACACCAAAGTATTTGAGGGTAAGGGCGGATCAAGGGTTGGAGTT
CCCATCGCCCCGGGTAGTGGGAGCGGAGATGGAGGCGCTTGAGGCAGCAG
TTGCAGCAGCAGCAGCAGCGGGGATGCTTTCGCCCTCATCGCCGCCGTCG
TGCTTGTCGTCCAGGGCGGTGGTAGAAGGAGAAGAAGCAGCTGATGCAGC
ACCAGCAGATGCAACTATGGGAGGCGACAATGATGATGGTGGTGGTGGGC
CGGCAGACTGTAGGAGGAGCGGTATGAGGAGAAAGGCTGCTCAGGAGGAG
GAGGAATGTGGATTTGCGTCTTTGGATTCTTCCGCCTCGTCCTGCTGGAA
TAACATATCGGGAGGGGAAGGGACGAGTGGAATTGTTCGTGACGTATGTA
AGCACAGGCGTGACCGAAAGCGAAAACGCTCGGGCTCTGCGTCGGATTCC
TTTTCCTTTACCGGTGTATCCTCCTCCTCCACCTCCTCCTCCTCCTCTGC
CTCCTCGAGCCTAGAAGCCGCCGGAGCAGCGACACCAACAGCGATGAAGT
CCACACCTACGTCCTCGGCGGAGGCGGCCGCAAAAGCAGCAGCCGCGGAG
GAACGTCAGGAGGTCTTGCAATTTGTCGTCCAGGAGCTGAAGGGGGAGCT
GTTCGTTGAACTGCTGGGGTTTGTCACGGCGGCCGCGCCGCAAGGGCCTT
GA
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Coding sequence (CDS) from alignment at chr1:1216237..1217688-

>NO01G04600.1 ID=NO01G04600.1|Name=NO01G04600.1|organism=Nannochloropsis oceanica|type=CDS|length=1452bp|location=Sequence derived from alignment at chr1:1216237..1217688- (Nannochloropsis oceanica)
ATGGATGAAAACAGCGTCGGCGCGCTCTTTTCCGCGGCCAAGCAAGGCCG
GGTCGAAGAACTTGCCACCCTCCTAGACGAACACCCCGAGCTAGTACACG
CTCGTAGCGACCCTTCTCACCATCACACCCTCCTCATCCTTGCGGCCTGG
CATGGCCGCACCTCCGTCGCCACCCTCCTTCTCGACCGAGGCGCGGACCC
GAACGCTGTCAACCTGGAAGGACGTACTCCTCTGTGGTTTTCTTGCTGTG
GTGGGCACGTGGAAACTGCCTCGTTGCTATTGGCTCGTGGGGGAAAGCCC
AGCGTGAGGAAGGAAGGGGGGTCGACGGCACTGATGGCAGCAGCCTGGAC
GGGGCATTTACCCGTGGCGAGGTTAATTTTGGACCACGCGGCGCGGATGG
AGGCGGATGCGAGGGATACCCAAGAGCAGCATCAGGACGAGGTACGGCGG
TTGTTGGATGAGCAGAACAAGGACGGATGTTCAGGGTTGTGGTTTGCAGC
GGGCCATGGGAGGGCGGAGATGGTGGCTTTCTTATTGAGGCGCGGGGCAG
ATTTTCTGCAGGCGGATTGTGATGGGTACACGGCTTTGCACGTGGCACGG
TTGAGGGGGTACGAGGATTGTGCGTTGTTGTTGGAGGACACAGAGAGGGC
TTACTGGCTCTACCAGGCTCGGCGACTGTATGACGATGCCACGACGTTAC
GAACTTTGCCACGGGCGGGGACTCGGGCAAGGTTTCAACAGCGACGGCAG
CAGCTGACACCAAAGTATTTGAGGGTAAGGGCGGATCAAGGGTTGGAGTT
CCCATCGCCCCGGGTAGTGGGAGCGGAGATGGAGGCGCTTGAGGCAGCAG
TTGCAGCAGCAGCAGCAGCGGGGATGCTTTCGCCCTCATCGCCGCCGTCG
TGCTTGTCGTCCAGGGCGGTGGTAGAAGGAGAAGAAGCAGCTGATGCAGC
ACCAGCAGATGCAACTATGGGAGGCGACAATGATGATGGTGGTGGTGGGC
CGGCAGACTGTAGGAGGAGCGGTATGAGGAGAAAGGCTGCTCAGGAGGAG
GAGGAATGTGGATTTGCGTCTTTGGATTCTTCCGCCTCGTCCTGCTGGAA
TAACATATCGGGAGGGGAAGGGACGAGTGGAATTGTTCGTGACGTATGTA
AGCACAGGCGTGACCGAAAGCGAAAACGCTCGGGCTCTGCGTCGGATTCC
TTTTCCTTTACCGGTGTATCCTCCTCCTCCACCTCCTCCTCCTCCTCTGC
CTCCTCGAGCCTAGAAGCCGCCGGAGCAGCGACACCAACAGCGATGAAGT
CCACACCTACGTCCTCGGCGGAGGCGGCCGCAAAAGCAGCAGCCGCGGAG
GAACGTCAGGAGGTCTTGCAATTTGTCGTCCAGGAGCTGAAGGGGGAGCT
GTTCGTTGAACTGCTGGGGTTTGTCACGGCGGCCGCGCCGCAAGGGCCTT
GA
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Synonyms
Publications