NO01G04080, NO01G04080 (gene) Nannochloropsis oceanica

Overview
NameNO01G04080
Unique NameNO01G04080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length831
Alignment locationchr1:1090015..1090845 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1090015..1090845 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G04080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04080.1NO01G04080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577277gene_422Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100205g13gene1287Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04080.1NO01G04080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04080 ID=NO01G04080|Name=NO01G04080|organism=Nannochloropsis oceanica|type=gene|length=831bp
ATGGCAGAGTCCCTTGTCTTCAACACAAGGGCGTTCAGTGCTGTCTCTCA
ATGGCTGGAGCAACCCACATCCAGCAAGGATACTCAGCACGAGGCTCAGG
AGGAAAGCAGCAAAATGCCCGCGCCCGCGTCCAACTGGCGCCACAAGCGG
GCAGGGTTAGGTCTTGAGGCCAAAAAGACAAAAGACAAGGAGGCAAAGGT
AGAGGGATCAGTTGGCACGCTCCAGAAGCTGCTGCTGGGCAAGGGCAAGA
AATCCAAGCGGCAACGAGAGCAGGAGGAGGACGATGCGGCCGCCACCAAA
CGGCAGCAGAAAGAGGAGGACGATGAGGACGACGACGGTGAGCTCGCAGA
CTCGAAGGCCCGTATATTTATTGCCTCTACAAAGCCACCCTTAGGTAGTA
CCATCGCCGGCGTACAGACTGAGGATCCCAAAAAGAAGAGGCGGAAAAAG
AAAAAGAAGGGCATCGTCAGTAATGCCGAAGGACAGGATACAGCAGGGCA
AGCATCTGCACCTGCTCCTCCATCAAACCGTATTCACACCATTGAGGCCA
GGTCCACAGCAAGTGAGTCTCTTTTCCAGAAGCCGAAGCCACAGGAAGAG
CAGCACCCAGGTGGACAGGAGGAGGCTAGTGAACCCCGTAGACAGAAGCG
GACCAAAAAACGCTCCAAACAAAAAAATATCCGACGGGATAAACGCAGCA
TAGGTCAGCGACCCGCACATCTACAGGAAGGCCACGAGTCATTCACTGGC
CGGGCTATGACGGACGAGACGAGGCGACATCTCGGTCTGCCCGTCGCTGC
GATTCCTATCCCGGCAGCCGACGTGAAATAA
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protein sequence of NO01G04080.1

>NO01G04080.1-protein ID=NO01G04080.1-protein|Name=NO01G04080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MAESLVFNTRAFSAVSQWLEQPTSSKDTQHEAQEESSKMPAPASNWRHKR
AGLGLEAKKTKDKEAKVEGSVGTLQKLLLGKGKKSKRQREQEEDDAAATK
RQQKEEDDEDDDGELADSKARIFIASTKPPLGSTIAGVQTEDPKKKRRKK
KKKGIVSNAEGQDTAGQASAPAPPSNRIHTIEARSTASESLFQKPKPQEE
QHPGGQEEASEPRRQKRTKKRSKQKNIRRDKRSIGQRPAHLQEGHESFTG
RAMTDETRRHLGLPVAAIPIPAADVK*
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Synonyms
Publications