NO01G04080.1, NO01G04080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04080.1
Unique NameNO01G04080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length831
Alignment locationchr1:1090015..1090845 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1090015..1090845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04080.1 vs.
Match: EWM29336.1 (hypothetical protein Naga_100205g13 [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 9.700e-30
Identity = 118/291 (40.55%), Postives = 160/291 (54.98%), Query Frame = 0 
Query:    1 MAESLVFNTRAFSAVSQWLEQPTSSK-DTQHEAQE------ESSKMPAPASNWRHKRAGLGLEAKKTKDKEAKVEG-SVGTLQKLLLGKGKKSKRQREQEEDDAAATKRQQKEEDDEDDDGELADSKARIFIA--STKPPLG-STIAGVQTEDPKKKRRKKKKKGIV----SNAEGQDTAGQASAPAPPSNRIHTI--------EARSTASESLFQKPKPQEEQHPGGQE-------EASEPRRQKRTKKRSKQKNIRRDKRSIGQRPAHLQEGHESFTGRAMTDETRRHL 262
            MA+SLVFNT AFSAVS+WLE  T+S+ DT H          E       +++ R KRAG+GL  KK KD++    G S+ TLQKLL G  +  KR RE+E+D+A A  + +  ED  +DDGE+ DSKA +F +  S+ P      +A  QT D KKK+R+KKK+G      +NA  + T    +    P N +           E+R+  +++    P       P   E         S    ++RTK RSKQKNIRRD R +  RPAHLQEGH +F GR +T+ET+R L
Sbjct:   12 MADSLVFNTSAFSAVSKWLEHGTASREDTTHPEDATGPQDMERDHTREHSTSRRLKRAGVGLAFKKDKDRQGNAAGGSMSTLQKLLRGNSRPGKRPREKEDDEATA--KNEPREDSAEDDGEVVDSKAHVFASKQSSLPRASIDAVACTQTGDSKKKKRRKKKEGDKGERDTNANEEKTGQDVADAKSPHNVLSASSKKGKPCEESRAPTAQAAPPDPANDGAHRPSTTETRGIENRHGSNQAPRRRTKTRSKQKNIRRDTRCLEDRPAHLQEGHTAFAGRTLTEETKRRL 300
The following BLAST results are available for this feature:
BLAST of NO01G04080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29336.19.700e-3040.55hypothetical protein Naga_100205g13 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04080NO01G04080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04080.1NO01G04080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04080.1.cds1NO01G04080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04080.1 ID=NO01G04080.1|Name=NO01G04080.1|organism=Nannochloropsis oceanica|type=mRNA|length=831bp
ATGGCAGAGTCCCTTGTCTTCAACACAAGGGCGTTCAGTGCTGTCTCTCA
ATGGCTGGAGCAACCCACATCCAGCAAGGATACTCAGCACGAGGCTCAGG
AGGAAAGCAGCAAAATGCCCGCGCCCGCGTCCAACTGGCGCCACAAGCGG
GCAGGGTTAGGTCTTGAGGCCAAAAAGACAAAAGACAAGGAGGCAAAGGT
AGAGGGATCAGTTGGCACGCTCCAGAAGCTGCTGCTGGGCAAGGGCAAGA
AATCCAAGCGGCAACGAGAGCAGGAGGAGGACGATGCGGCCGCCACCAAA
CGGCAGCAGAAAGAGGAGGACGATGAGGACGACGACGGTGAGCTCGCAGA
CTCGAAGGCCCGTATATTTATTGCCTCTACAAAGCCACCCTTAGGTAGTA
CCATCGCCGGCGTACAGACTGAGGATCCCAAAAAGAAGAGGCGGAAAAAG
AAAAAGAAGGGCATCGTCAGTAATGCCGAAGGACAGGATACAGCAGGGCA
AGCATCTGCACCTGCTCCTCCATCAAACCGTATTCACACCATTGAGGCCA
GGTCCACAGCAAGTGAGTCTCTTTTCCAGAAGCCGAAGCCACAGGAAGAG
CAGCACCCAGGTGGACAGGAGGAGGCTAGTGAACCCCGTAGACAGAAGCG
GACCAAAAAACGCTCCAAACAAAAAAATATCCGACGGGATAAACGCAGCA
TAGGTCAGCGACCCGCACATCTACAGGAAGGCCACGAGTCATTCACTGGC
CGGGCTATGACGGACGAGACGAGGCGACATCTCGGTCTGCCCGTCGCTGC
GATTCCTATCCCGGCAGCCGACGTGAAATAA
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protein sequence of NO01G04080.1

>NO01G04080.1-protein ID=NO01G04080.1-protein|Name=NO01G04080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MAESLVFNTRAFSAVSQWLEQPTSSKDTQHEAQEESSKMPAPASNWRHKR
AGLGLEAKKTKDKEAKVEGSVGTLQKLLLGKGKKSKRQREQEEDDAAATK
RQQKEEDDEDDDGELADSKARIFIASTKPPLGSTIAGVQTEDPKKKRRKK
KKKGIVSNAEGQDTAGQASAPAPPSNRIHTIEARSTASESLFQKPKPQEE
QHPGGQEEASEPRRQKRTKKRSKQKNIRRDKRSIGQRPAHLQEGHESFTG
RAMTDETRRHLGLPVAAIPIPAADVK*
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mRNA from alignment at chr1:1090015..1090845+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04080.1 ID=NO01G04080.1|Name=NO01G04080.1|organism=Nannochloropsis oceanica|type=mRNA|length=831bp|location=Sequence derived from alignment at chr1:1090015..1090845+ (Nannochloropsis oceanica)
ATGGCAGAGTCCCTTGTCTTCAACACAAGGGCGTTCAGTGCTGTCTCTCA
ATGGCTGGAGCAACCCACATCCAGCAAGGATACTCAGCACGAGGCTCAGG
AGGAAAGCAGCAAAATGCCCGCGCCCGCGTCCAACTGGCGCCACAAGCGG
GCAGGGTTAGGTCTTGAGGCCAAAAAGACAAAAGACAAGGAGGCAAAGGT
AGAGGGATCAGTTGGCACGCTCCAGAAGCTGCTGCTGGGCAAGGGCAAGA
AATCCAAGCGGCAACGAGAGCAGGAGGAGGACGATGCGGCCGCCACCAAA
CGGCAGCAGAAAGAGGAGGACGATGAGGACGACGACGGTGAGCTCGCAGA
CTCGAAGGCCCGTATATTTATTGCCTCTACAAAGCCACCCTTAGGTAGTA
CCATCGCCGGCGTACAGACTGAGGATCCCAAAAAGAAGAGGCGGAAAAAG
AAAAAGAAGGGCATCGTCAGTAATGCCGAAGGACAGGATACAGCAGGGCA
AGCATCTGCACCTGCTCCTCCATCAAACCGTATTCACACCATTGAGGCCA
GGTCCACAGCAAGTGAGTCTCTTTTCCAGAAGCCGAAGCCACAGGAAGAG
CAGCACCCAGGTGGACAGGAGGAGGCTAGTGAACCCCGTAGACAGAAGCG
GACCAAAAAACGCTCCAAACAAAAAAATATCCGACGGGATAAACGCAGCA
TAGGTCAGCGACCCGCACATCTACAGGAAGGCCACGAGTCATTCACTGGC
CGGGCTATGACGGACGAGACGAGGCGACATCTCGGTCTGCCCGTCGCTGC
GATTCCTATCCCGGCAGCCGACGTGAAATAA
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Coding sequence (CDS) from alignment at chr1:1090015..1090845+

>NO01G04080.1 ID=NO01G04080.1|Name=NO01G04080.1|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at chr1:1090015..1090845+ (Nannochloropsis oceanica)
ATGGCAGAGTCCCTTGTCTTCAACACAAGGGCGTTCAGTGCTGTCTCTCA
ATGGCTGGAGCAACCCACATCCAGCAAGGATACTCAGCACGAGGCTCAGG
AGGAAAGCAGCAAAATGCCCGCGCCCGCGTCCAACTGGCGCCACAAGCGG
GCAGGGTTAGGTCTTGAGGCCAAAAAGACAAAAGACAAGGAGGCAAAGGT
AGAGGGATCAGTTGGCACGCTCCAGAAGCTGCTGCTGGGCAAGGGCAAGA
AATCCAAGCGGCAACGAGAGCAGGAGGAGGACGATGCGGCCGCCACCAAA
CGGCAGCAGAAAGAGGAGGACGATGAGGACGACGACGGTGAGCTCGCAGA
CTCGAAGGCCCGTATATTTATTGCCTCTACAAAGCCACCCTTAGGTAGTA
CCATCGCCGGCGTACAGACTGAGGATCCCAAAAAGAAGAGGCGGAAAAAG
AAAAAGAAGGGCATCGTCAGTAATGCCGAAGGACAGGATACAGCAGGGCA
AGCATCTGCACCTGCTCCTCCATCAAACCGTATTCACACCATTGAGGCCA
GGTCCACAGCAAGTGAGTCTCTTTTCCAGAAGCCGAAGCCACAGGAAGAG
CAGCACCCAGGTGGACAGGAGGAGGCTAGTGAACCCCGTAGACAGAAGCG
GACCAAAAAACGCTCCAAACAAAAAAATATCCGACGGGATAAACGCAGCA
TAGGTCAGCGACCCGCACATCTACAGGAAGGCCACGAGTCATTCACTGGC
CGGGCTATGACGGACGAGACGAGGCGACATCTCGGTCTGCCCGTCGCTGC
GATTCCTATCCCGGCAGCCGACGTGAAATAA
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Synonyms
Publications