NO01G03960, NO01G03960 (gene) Nannochloropsis oceanica

Overview
NameNO01G03960
Unique NameNO01G03960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2220
Alignment locationchr1:1055163..1057382 +

Link to JBrowse

Properties
Property NameValue
DescriptionGdp-l-galactose phosphorylase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1055163..1057382 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0080048GDP-D-glucose phosphorylase activity
GO:0080048GDP-D-glucose phosphorylase activity
Vocabulary: INTERPRO
TermDefinition
IPR026506GDPGP
Homology
BLAST of NO01G03960 vs. NCBI_GenBank
Match: EWM29324.1 (gdp-l-galactose phosphorylase [Nannochloropsis gaditana])

HSP 1 Score: 427.2 bits (1097), Expect = 7.900e-116
Identity = 237/490 (48.37%), Postives = 300/490 (61.22%), Query Frame = 0
Query:   62 LVLPFLVVVMHFRPGRPHGAITRSAYSGAGPEETSWAASWPCIQGLPQGIVQDLYGIGDGKSAIDMLVYQSPVPLHSTITSSSSSSFMRFILALGAGSKGLQGTLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQ----------DEEGGSXXXXXXXXXXXXXXXXXTTQCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMALSGTSVPALAKAGAHCLDVLVSRNIPFSLLMNGKHLYIMPRRFSDLTLDFTSVGFPEAAGLLLVMNETQWRDETLLNADIVWDLWDKTYGVSGEVFKELVEEC 542
            L+LP LVV++HF   RPH  +T         E   WA+ WPC+   P+G + ++YG    +   D+ VYQ P         S   S   ++L L AG +      +P  L LG LIK+ W+ K+K G  F+T+V GA  R SQG   PW  ELY NPGR+ KP S+ A  V ++S P++   FSFL AP++D+MFWY+ P+           EEG                      C+PV+R   A R  A +  H V INPYPIGDLSGVL PF FE+RPQ L+ SLDA+TVGL+FA+ELLA         R   + T LR+GFNS GA A+I HLHFQFW    G DG +PIER P   P  TSF  VEL+VI   +HPIRS+ LSG S+PALAKA AHC++VL+ RNIPFSLLMNG+HLYIMPRRF++ T  F S GFPEAAG LLV+N+T WRD +LLNADIVWDLW +++ V  E+F  ++  C
Sbjct:    4 LLLPLLVVIVHF---RPHDPMT--------VESVDWASFWPCLVDPPEGTLAEVYGARGSEQDRDVFVYQKPFNFIPP-QPSPPLSVKEYLLGL-AGVRERCEIFDPRKLGLGGLIKHRWDQKQKTGQ-FRTTVTGARIRSSQGTKSPWMVELYLNPGRSHKPVSVPAKAVGNISQPYDPRAFSFLGAPARDVMFWYRTPRARDLQVNEHASEEGSK------GGDGAEESWSTAMSCEPVDR---ATRGHA-RDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGAR------RDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLSGRSIPALAKAAAHCVNVLMDRNIPFSLLMNGQHLYIMPRRFANTTFPFASAGFPEAAGFLLVVNDTYWRDPSLLNADIVWDLWRESFDVGEEMFNGILSAC 463          
BLAST of NO01G03960 vs. NCBI_GenBank
Match: ETO29934.1 (hypothetical protein RFI_07185 [Reticulomyxa filosa])

HSP 1 Score: 104.4 bits (259), Expect = 1.200e-18
Identity = 62/204 (30.39%), Postives = 104/204 (50.98%), Query Frame = 0
Query:  303 AQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMALSGTSVPALAKAGAHCLDVLVSRNIPFSLLMNGKHLYIMPRRFSDLTLDF-TSVGFPEAAGLLLVMNE 506
            A+   H + +N +PIG+ SG+  P+ ++K PQVL+  L  L VGL F A  L+ +            K   R+GFNS GA A++NH HFQFW       GL+P+E L        +   +++       +PIR++     +     +   HC+  L+  +IP +L+++ + +Y+  R    LT ++    GF + +G + V+NE
Sbjct:  334 AKTDTHLLLVNRFPIGNYSGLFTPYFWQKLPQVLTKEL--LHVGLQFNAMFLSQSH-----------KGTFRVGFNSLGAMASVNHFHFQFWKID---TGLLPVETLHKTPIPTANKQHLQIFTFNDNVYPIRTLIYPIVTGNRTLETLWHCVKFLIESDIPHNLMISRQFVYLFVRNEQQLTSNYPIFYGFSDVSGWITVLNE 521          
BLAST of NO01G03960 vs. NCBI_GenBank
Match: XP_001749638.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ85447.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 99.4 bits (246), Expect = 3.800e-17
Identity = 78/249 (31.33%), Postives = 120/249 (48.19%), Query Frame = 0
Query:  303 AQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMALS--GTSVPALAKAGAHCLDVLVSRNIPFSLLMNGKH-----------LYIMPRRFSDLTLDFTSVGFPEAAGLLLVMNETQWRDETLLNADIVWDLWDKTYGVSGEVFKELV 539
            A  HQH V INP+P+G LSG+L P++ E RPQV+  + DALT G +FA  L        Q P         RL FNS  A A++NHLHFQFW F    D  + +E L  RQ  L    G EL++  +   P+ ++A+    T+           +D+L    +PF+L+ +  +           +YI+ R+         ++GFPE +G L+  + + +   T  N   +   W     +SG+ + E +
Sbjct:  172 ADLHQHAVLINPFPLGWLSGLLVPYLLEHRPQVM--TRDALTAGFAFAQRL--------QNP-------YTRLAFNSLEAGASVNHLHFQFWQF----DAPLAVE-LATRQ--LYFRFGEELTLHILPDAPVHTLAVEYFRTTATGAIVVVQRIIDLLYQHVLPFNLVFSRYYVNAGISPSRSTVYIVLRQRMH-PFPGINIGFPEVSGELICTSSSIYHSVTAHN---ISQHWRDNVRLSGDRYTEFL 392          
BLAST of NO01G03960 vs. NCBI_GenBank
Match: XP_004995109.1 (hypothetical protein PTSG_04213 [Salpingoeca rosetta] >EGD83605.1 hypothetical protein PTSG_04213 [Salpingoeca rosetta])

HSP 1 Score: 99.4 bits (246), Expect = 3.800e-17
Identity = 82/246 (33.33%), Postives = 114/246 (46.34%), Query Frame = 0
Query:  297 FAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIR---SMALSGTSVPALAKAGAHCLDVLVSRNIPFSLLMNGKHLYIMPRRFSDLTLDFTSVGFPEAAGLLLVMNETQWRDETLLNADIVWDLWDKTYGVSGEVFKELVE 540
            F++ +   +  H V +N  P+   SG+L PF+ E+R QV+  + DAL VGL FA  L  S                +R+GFNS  A A++NHLHFQFW  +      +PIE   +     T    VE    G     +R     A  G  V AL  A  H    L  RN P++L++    +Y++PR+     L   +VGFPE +G  LV +     D   L A+ V   W     V   VF ELV+
Sbjct:  155 FSDIQAFHRPVHAVLVNKSPLSKYSGLLVPFLREQRNQVM--TADALLVGLGFANRLQGSG---------------IRVGFNSLYAGASVNHLHFQFWWDTHA----LPIELAEMTTVTATDRLLVERDA-GYLSSFLRFTYDRAAPGVVVEALMPALQH----LTRRNTPYNLVLVPGMVYLLPRQPMLKQLGSINVGFPEVSGTPLVPSHD---DFVALTAEDVVRHWTTHVRVPSTVFDELVD 371          
BLAST of NO01G03960 vs. NCBI_GenBank
Match: CBJ28200.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.2 bits (230), Expect = 2.700e-15
Identity = 71/260 (27.31%), Postives = 113/260 (43.46%), Query Frame = 0
Query:  299 EREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGL------------IPIERLPLRQPM---LTSFPGVELSVIGIKHHPIRSMALS--GTSVPALAKAGAHCLDVLVSRNIPFSLLMNGKHLYIMPRRFSDLTLDFTSVGFPEAAGLLLVMNETQWRDETLLNADIVWDLWDKTYGVSGEVFKELVEEC 542
            E   A   Q  V +N  P+G +S +L P       Q    +  +L V + FA       EA+  +P         RLGFNS G+ A++NHLHFQ W F  GP GL            +P+ R     P      +     L V  ++ +PIR++     G  + A  +A   C+  LV  N P +++ +   ++++PR+  +        GFPE +G ++V  E    D   + AD +++ W     V  E F  + + C
Sbjct:  312 EASTASPPQDAVLVNIRPVGPVSLLLTPGYAHSHNQ--RATAYSLAVAIDFA-------EALRVDP-------GFRLGFNSAGSSASVNHLHFQCWYFDAGPGGLAIESSKTRHLATVPLPRSSFSPPAEGENAADKEDSLEVHVLQGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFSTGRVFVLPRQHLEEPPFAVVPGFPEVSGEVIVTRED---DFHTITADQIYEWWRDKVAVDSEHFDRITDGC 552          
BLAST of NO01G03960 vs. NCBI_GenBank
Match: XP_013725714.1 (GDP-L-galactose phosphorylase 1-like [Brassica napus])

HSP 1 Score: 85.1 bits (209), Expect = 7.400e-13
Identity = 82/319 (25.71%), Postives = 145/319 (45.45%), Query Frame = 0
Query:  168 PNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQDEEGGSXXXXXXXXXXXXXXXXXTTQCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMAL-SGTSVPALAKAGAHCLDVLVSRNIPFSLLM--NGKHLYIMPRRFSD 484
            P    L  L+   WE + ++G +F+  V   ET+   GK + +  +L        +P+     +V+ V   F+ + F+F     ++L+F ++  +D E                       C PV         +A+     V IN  PI     +L P + +  PQ +     +L + L  AAE               A     RLG+NS GA ATINHLHFQ +  +       P+E+ P ++ M+T+  GV++S   + ++P+RS+    GTS+  L+   +     L + NIPF++L+  +G+ +++MP+ +++
Sbjct:   67 PPVAFLESLVLEEWEDRFQRG-LFRYDVTACETKVIPGK-YGFVAQLNEGRHLKKRPTEF---RVDKVLQSFDGNKFNFTKVGQEELLFQFEAGEDCEA------------------QFFPCMPV---------DAENSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHK--SLLLALHMAAE---------------AANPYFRLGYNSLGAFATINHLHFQAYYLAMP----FPLEKAPSKK-MITTVSGVKIS--ELVNYPVRSLLFEGGTSMQDLSDTVSDACVCLQNNNIPFNILISDSGRQIFLMPQCYAE 329          
BLAST of NO01G03960 vs. NCBI_GenBank
Match: GAQ93260.1 (GDP-L-galactose phosphorylases [Klebsormidium nitens])

HSP 1 Score: 85.1 bits (209), Expect = 7.400e-13
Identity = 85/333 (25.53%), Postives = 144/333 (43.24%), Query Frame = 0
Query:  157 AGSKGLQGTLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQDEEGGSXXXXXXXXXXXXXXXXXTTQCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVE---LSVIGIKHHPIRSMALS-GTSVPALAKAGAHCLDVLVSRNIPFSLLM--NGKHLYIMPRRFSD 484
            + S G      P+   L +L+   WE + ++G +F+  V   ET+   G ++ +  +L        +P+     +V+ V  PF+   F+F      +++F ++  Q E+G                           R D+ E        + V IN  PI     +L P + +  PQ L   +D+L + L FA E               A    LRLG+NS GA ATINHLHFQ + + + P    P+E    R P +   P      + V  ++ +P+R++    G S+P LA A       L  RN PF++L+  +G  +++ P+ +++
Sbjct:   76 SNSSGSDSDSEPDKSCLDQLLVAQWEDRAERG-LFRYDVTACETKMLAG-EYGFIAQLNEGRHLKKRPTEF---RVDQVLQPFDAAKFNFTKVDPAEVLFRFE--QSEDG---------------------------RSDYYEHAPVSDSPNVVIINVSPIEYGHVLLVPRVLDCLPQRL--DVDSLLLALHFAHE---------------ADNPYLRLGYNSLGAFATINHLHFQAY-YLNAP---FPVE----RAPTVCFSPKKRKRAVKVCELRQYPVRALVFEVGASLPELAAAVGRVCARLQDRNRPFNVLIADSGARVFVFPQCYAE 349          
BLAST of NO01G03960 vs. NCBI_GenBank
Match: XP_016578063.1 (PREDICTED: GDP-L-galactose phosphorylase 1-like [Capsicum annuum] >PHT79927.1 GDP-L-galactose phosphorylase 1 [Capsicum annuum])

HSP 1 Score: 83.2 bits (204), Expect = 2.800e-12
Identity = 79/322 (24.53%), Postives = 141/322 (43.79%), Query Frame = 0
Query:  165 TLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQDEEGGSXXXXXXXXXXXXXXXXXTTQCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMAL-SGTSVPALAKAGAHCLDVLVSRNIPFSLLM--NGKHLYIMPRRFSD 484
            T+ P    L  L+   WE ++++G +F+  V   ET+   G ++ +  +L        +P+     +V+ V  PF+   F+F     ++L+F ++   ++E                      Q  P    D      A+K    V IN  PI     +L P + E  PQ +    D+  + L  A E               A     RLG+NS GA ATINHLHFQ +  +       PIE+ P ++  +T   G  + +  + ++P+R +    G ++  LA   + C   L   NIP+++L+  +GK ++++P+ +++
Sbjct:   62 TMEPPVDFLESLLLGEWEDRQQKG-LFRYDVTACETKVIPG-EYGFIAQLNEGRHLKKRPTEF---RVDKVLQPFDGSKFNFTKVGQEELLFQFEASDEDE---------------------VQLYPDAPID------AEKSPSVVAINVSPIEYGHVLLIPKVLECLPQRI--DRDSFLLALHMAVE---------------AANPYFRLGYNSLGAFATINHLHFQAYYLA----VQFPIEKAPTQKISVT---GARVKISEMLNYPVRGLVFEGGNTLEDLANVVSDCCICLQENNIPYNVLISDSGKRIFLLPQCYAE 327          
BLAST of NO01G03960 vs. NCBI_GenBank
Match: XP_019576183.1 (PREDICTED: GDP-L-galactose phosphorylase 1 [Rhinolophus sinicus])

HSP 1 Score: 83.2 bits (204), Expect = 2.800e-12
Identity = 86/333 (25.83%), Postives = 150/333 (45.05%), Query Frame = 0
Query:  156 GAGSK-GL-QGTLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQDEEGGSXXXXXXXXXXXXXXXXXTTQCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMAL-SGTSVPALAKAGAHCLDVLVSRNIPFSLLMN--GKHLYIMPRRFSD 484
            GAG K G+      P    L  L+   WE + ++G +F+  V   ET+   GK + +  +L        +P+     +V+ V   F+ + F+F     ++L+F +++ +D E                       C P+         +A      V IN  PI     +L P + +  PQ +     +L + L  AAE               A     RLG+NS GA ATINHLHFQ +  +       P+E+ P ++ M+T+  GV++S   +  +P+RS+    G+S+  L+   +     L + NIPF++L++  GK +++MP+ +++
Sbjct:   53 GAGEKLGISHEAREPPVAFLESLVLGEWEDRFQRG-LFRYDVTACETKVIPGK-YGFVAQLNEGRHLKKRPTEF---RVDKVLQSFDGNKFNFTKVGQEELLFQFEVGEDGE------------------VQFFPCMPL---------DADNSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHK--SLLLALHMAAE---------------AANPYFRLGYNSLGAFATINHLHFQAYYLAMP----FPLEKAPSKK-MITTVSGVKIS--ELLSYPVRSLVFEGGSSMQDLSDTVSDACVCLQNNNIPFNILISDCGKQIFLMPQCYAE 329          
BLAST of NO01G03960 vs. NCBI_GenBank
Match: PHT27561.1 (GDP-L-galactose phosphorylase 1, partial [Capsicum baccatum])

HSP 1 Score: 83.2 bits (204), Expect = 2.800e-12
Identity = 82/322 (25.47%), Postives = 143/322 (44.41%), Query Frame = 0
Query:  165 TLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQDEEGGSXXXXXXXXXXXXXXXXXTTQCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMAL-SGTSVPALAKAGAHCLDVLVSRNIPFSLLM--NGKHLYIMPRRFSD 484
            T+ P    L  L+   WE ++++G +F+  V   ET+   G ++ +  +L        +P+     +V+ V  PF+   F+F     ++L+F ++   ++E                      Q  P    D      A+K    V IN  PI     +L P + E  PQ +    D+  + L  A E               A     RLG+NS GA ATINHLHFQ +  +      +PIE+ P  Q M  +  GV++S   + ++P+R +    G ++  LA   + C   L   NIP+++L+  +GK ++++P+ +++
Sbjct:   62 TMEPPVDFLESLLLGEWEDRQQKG-LFRYDVTACETKVIPG-EYGFIAQLNEGRHLKKRPTEF---RVDKVLQPFDGSKFNFTKVGQEELLFQFEASDEDE---------------------VQLYPDAPID------AEKSPSVVAINVSPIEYGHVLLIPKVLECLPQRI--DRDSFLLALHMAVE---------------AANPYFRLGYNSLGAFATINHLHFQAYYLA----VQLPIEKAP-TQKMSVTDAGVKIS--EMLNYPVRGLVFEGGNTLEDLANVVSDCCICLQENNIPYNVLISDSGKRIFLLPQCYAE 327          
The following BLAST results are available for this feature:
BLAST of NO01G03960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29324.17.900e-11648.37gdp-l-galactose phosphorylase [Nannochloropsis gad... [more]
ETO29934.11.200e-1830.39hypothetical protein RFI_07185 [Reticulomyxa filos... [more]
XP_001749638.13.800e-1731.33hypothetical protein [Monosiga brevicollis MX1] >E... [more]
XP_004995109.13.800e-1733.33hypothetical protein PTSG_04213 [Salpingoeca roset... [more]
CBJ28200.12.700e-1527.31conserved unknown protein [Ectocarpus siliculosus][more]
XP_013725714.17.400e-1325.71GDP-L-galactose phosphorylase 1-like [Brassica nap... [more]
GAQ93260.17.400e-1325.53GDP-L-galactose phosphorylases [Klebsormidium nite... [more]
XP_016578063.12.800e-1224.53PREDICTED: GDP-L-galactose phosphorylase 1-like [C... [more]
XP_019576183.12.800e-1225.83PREDICTED: GDP-L-galactose phosphorylase 1 [Rhinol... [more]
PHT27561.12.800e-1225.47GDP-L-galactose phosphorylase 1, partial [Capsicum... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007898NSK007898Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03960.1NO01G03960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577242gene_407Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g3gene1300Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03960.1NO01G03960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03960 ID=NO01G03960|Name=NO01G03960|organism=Nannochloropsis oceanica|type=gene|length=2220bp
GCCTGTATAGAGCGGGTGTGCAAAGATGGGTAGGGCGTGTGGGTGGTGTG
GTGTGTGCGTGAAGTTGTGTCAACTTGTGTGATGGAGAACGAGTTGTTGA
CGATACAATGATTCGCTCATCATATCATAATCCCACCACGACAAATGGTG
AACGAACAGGACAAAGTTCCATGTGTTGAGCCCACCATGCGACCGCGATG
GCTAAGCAGAAGTAGGGGGAGCCCTGTGAGTAGAAGCTTGCCACGGACGC
GCGGCCCAAATCAAGTTCGATGTTGGTTGGTCTCGCACAAAGgtaagcat
tcgatatgggccttcccaagtaaacacccacactaaaaccccaccaccac
tcttgtcaacagGCACCAAGACATTCAAATTCTTGACAGCTATCCTGCTA
GTCTTGCCTTTCCTAGTTGTGGTTATGCATTTTCGTCCCGGCAGGCCCCA
TGGCGCCATTACAAGAAGCGCCTACTCCGGAGCCGGACCTGAGGAGACAA
GCTGGGCCGCGTCGTGGCCGTGCATTCAGGGCTTGCCACAAGGCATAGTG
CAAGACTTGTATGGAATTGGTGACGGCAAAAGCGCGATAGATATGTTGGT
CTATCAAAGTCCTGTGCCCTTGCATTCCACCATTACCTCTTCCTCTTCGT
CGTCGTTCATGCGGTTCATTCTGGCACTGgtacgtgcttttgagcacaga
taaattatgacgcgaaaatacgaacgatatctcttataaagtatgtccat
ttcttcatgtttgtcacactttgagctcttcacatcccacccctcaaacc
tcaaccccataacaacagGGAGCCGGCAGCAAGGGTCTCCAAGGCACCCT
TAACCCTAACGCTCTCACACTCGGCCGACTCATAAAGTACATCTGGGAGG
CTAAAGAAAAACAAGGCGACATTTTTAAAACTTCCGTCAAAGGCGCCGAG
ACACGGCACTCTCAAGGCAAAGACTTTCCGTGGGCATGTGAATTATATCG
AAACCCCGGAAGGGCTTCCAAGCCGTCTTCGATGGCAGCAACGCAAGTGA
ATCATGTCTCCATCCCCTTTGAGGAGGACATATTCAGCTTTCTTATGGCC
CCGTCGCAGGATTTGATGTTCTGGTATCAGCTGCCACAGGATGAGGAAGG
AGGTAGCAGCAGGAGCAGCAAGAGCAGCAGGAGCAGTGGCAGCAGCAGCC
AGACGATAACGACGCAATGTCAGCCAGTGGAGAGGGGGGACTTCGCGGAA
AGAGAAGAGGCACAAAAGCACCAGCACGGGGTGTTCATTAATCCCTATCC
GATTGGCGATTTGTCTGGCGTTCTTTGCCCCTTCATTTTCGAGAAGCGCC
CTCAGGTGTTGAGTGATTCATTGGACGCACTGACGGTCGGTTTGAGCTTT
GCCGCCGAGCTGCTCGCGAGCAACGAGGCTATGGATCAAGAACCGAGACA
GACAGCAAAAAAGACGAAGCTTCGATTAGGCTTTAATTCTTGGGGAGCGC
GTGCGACCATCAACCACCTTCATTTTCAGTTTTGGAGTTTCAGTGATGGG
CCTGATGGACTCATCCCTATAGAGCGATTGCCATTACGGCAACCTATGCT
GACCTCCTTTCCGGGGGTAGAGCTCTCTGTGATCGGAATAAAGCACCATC
CTATTCGATCGATGGCATTGTCGGGGACGTCGGTGCCGGCTTTGGCCAAA
GCGGGCGCACATTGCCTGGATGTATTGGTGAGTCGGAATATCCCTTTTAG
TCTGCTTATGAATGGGAAGCATTTATACATCATGCCGAGGCGGTTTTCGG
ATCTGACGCTTGATTTTACTTCGGTGGGATTTCCGGAAGCTGCTGGGTTG
TTGTTGGTGATGAATGAGACGCAATGGAGGGACGAGACATTGCTGAACGC
TGATATTGTTTGGGATTTGTGGGATAAGACCTACGGTGTGAGTGGAGAGG
TATTCAAAGAGTTGGTGGAGGAGTGTACGGAGATGCCGGCTGATGAGGTG
GAGGTATGATAATGGGGAAAAAAGGGTGGGGGGCGAAATTGAAGGGGAGG
TTTTCGCGACGCTTACTTGGCTGTGTGCAGTGGAGTCAGCAGGCTTGATA
GAGATATATTTTGAAAAATGTGGAATGCATACTGTAGAAGAAATCTGTGA
TGATGAAAACCTGGCCGAAATGACAAAGAATGAATTACAAGCACGCTGCA
GGCTTGTGGGAGTGTGGGTG
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protein sequence of NO01G03960.1

>NO01G03960.1-protein ID=NO01G03960.1-protein|Name=NO01G03960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MVNEQDKVPCVEPTMRPRWLSRSRGSPVSRSLPRTRGPNQVRCWLVSHKG
TKTFKFLTAILLVLPFLVVVMHFRPGRPHGAITRSAYSGAGPEETSWAAS
WPCIQGLPQGIVQDLYGIGDGKSAIDMLVYQSPVPLHSTITSSSSSSFMR
FILALGAGSKGLQGTLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAET
RHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAP
SQDLMFWYQLPQDEEGGSSRSSKSSRSSGSSSQTITTQCQPVERGDFAER
EEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFA
AELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGP
DGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMALSGTSVPALAKA
GAHCLDVLVSRNIPFSLLMNGKHLYIMPRRFSDLTLDFTSVGFPEAAGLL
LVMNETQWRDETLLNADIVWDLWDKTYGVSGEVFKELVEECTEMPADEVE
V*
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Synonyms
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