NO01G03960.1, NO01G03960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03960.1
Unique NameNO01G03960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2011
Alignment locationchr1:1055163..1057382 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1055163..1057382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03960.1 vs.
Match: EWM29324.1 (gdp-l-galactose phosphorylase [Nannochloropsis gaditana])

HSP 1 Score: 431.8 bits (1109), Expect = 3.200e-117
Identity = 237/484 (48.97%), Postives = 306/484 (63.22%), Query Frame = 0 
Query:   62 LVLPFLVVVMHFRPGRPHGAITRSAYSGAGPEETSWAASWPCIQGLPQGIVQDLYGIGDGKSAIDMLVYQSPVPLHSTITSSSSSSFMRFILALGAGSKGLQGTLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQ--DEEGGSSRSSKSSRSSGSSSQTITT--QCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMALSGTSVPALAKAGAHCLDVLVSRNIPFSLLMNGKHLYIMPRRFSDLTLDFTSVGFPEAAGLLLVMNETQWRDETLLNADIVWDLWDKTYGVSGEVFKELVEEC 542
            L+LP LVV++HFRP  P              E   WA+ WPC+   P+G + ++YG    +   D+ VYQ P         S   S   ++L L AG +      +P  L LG LIK+ W+ K+K G  F+T+V GA  R SQG   PW  ELY NPGR+ KP S+ A  V ++S P++   FSFL AP++D+MFWY+ P+  D +     S + S+    + ++ +T   C+PV+R   A R  A +  H V INPYPIGDLSGVL PF FE+RPQ L+ SLDA+TVGL+FA+ELLA     D       + T LR+GFNS GA A+I HLHFQFW    G DG +PIER P   P  TSF  VEL+VI   +HPIRS+ LSG S+PALAKA AHC++VL+ RNIPFSLLMNG+HLYIMPRRF++ T  F S GFPEAAG LLV+N+T WRD +LLNADIVWDLW +++ V  E+F  ++  C
Sbjct:    4 LLLPLLVVIVHFRPHDPMTV-----------ESVDWASFWPCLVDPPEGTLAEVYGARGSEQDRDVFVYQKPFNFIPP-QPSPPLSVKEYLLGL-AGVRERCEIFDPRKLGLGGLIKHRWDQKQKTGQ-FRTTVTGARIRSSQGTKSPWMVELYLNPGRSHKPVSVPAKAVGNISQPYDPRAFSFLGAPARDVMFWYRTPRARDLQVNEHASEEGSKGGDGAEESWSTAMSCEPVDR---ATRGHA-RDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGARRDDD------RSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLSGRSIPALAKAAAHCVNVLMDRNIPFSLLMNGQHLYIMPRRFANTTFPFASAGFPEAAGFLLVVNDTYWRDPSLLNADIVWDLWRESFDVGEEMFNGILSAC 463
The following BLAST results are available for this feature:
BLAST of NO01G03960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29324.13.200e-11748.97gdp-l-galactose phosphorylase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03960NO01G03960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03960.1NO01G03960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03960.1.cds1NO01G03960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03960.1.cds2NO01G03960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03960.1.cds3NO01G03960.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03960.1 ID=NO01G03960.1|Name=NO01G03960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2011bp
GCCTGTATAGAGCGGGTGTGCAAAGATGGGTAGGGCGTGTGGGTGGTGTG
GTGTGTGCGTGAAGTTGTGTCAACTTGTGTGATGGAGAACGAGTTGTTGA
CGATACAATGATTCGCTCATCATATCATAATCCCACCACGACAAATGGTG
AACGAACAGGACAAAGTTCCATGTGTTGAGCCCACCATGCGACCGCGATG
GCTAAGCAGAAGTAGGGGGAGCCCTGTGAGTAGAAGCTTGCCACGGACGC
GCGGCCCAAATCAAGTTCGATGTTGGTTGGTCTCGCACAAAGGCACCAAG
ACATTCAAATTCTTGACAGCTATCCTGCTAGTCTTGCCTTTCCTAGTTGT
GGTTATGCATTTTCGTCCCGGCAGGCCCCATGGCGCCATTACAAGAAGCG
CCTACTCCGGAGCCGGACCTGAGGAGACAAGCTGGGCCGCGTCGTGGCCG
TGCATTCAGGGCTTGCCACAAGGCATAGTGCAAGACTTGTATGGAATTGG
TGACGGCAAAAGCGCGATAGATATGTTGGTCTATCAAAGTCCTGTGCCCT
TGCATTCCACCATTACCTCTTCCTCTTCGTCGTCGTTCATGCGGTTCATT
CTGGCACTGGGAGCCGGCAGCAAGGGTCTCCAAGGCACCCTTAACCCTAA
CGCTCTCACACTCGGCCGACTCATAAAGTACATCTGGGAGGCTAAAGAAA
AACAAGGCGACATTTTTAAAACTTCCGTCAAAGGCGCCGAGACACGGCAC
TCTCAAGGCAAAGACTTTCCGTGGGCATGTGAATTATATCGAAACCCCGG
AAGGGCTTCCAAGCCGTCTTCGATGGCAGCAACGCAAGTGAATCATGTCT
CCATCCCCTTTGAGGAGGACATATTCAGCTTTCTTATGGCCCCGTCGCAG
GATTTGATGTTCTGGTATCAGCTGCCACAGGATGAGGAAGGAGGTAGCAG
CAGGAGCAGCAAGAGCAGCAGGAGCAGTGGCAGCAGCAGCCAGACGATAA
CGACGCAATGTCAGCCAGTGGAGAGGGGGGACTTCGCGGAAAGAGAAGAG
GCACAAAAGCACCAGCACGGGGTGTTCATTAATCCCTATCCGATTGGCGA
TTTGTCTGGCGTTCTTTGCCCCTTCATTTTCGAGAAGCGCCCTCAGGTGT
TGAGTGATTCATTGGACGCACTGACGGTCGGTTTGAGCTTTGCCGCCGAG
CTGCTCGCGAGCAACGAGGCTATGGATCAAGAACCGAGACAGACAGCAAA
AAAGACGAAGCTTCGATTAGGCTTTAATTCTTGGGGAGCGCGTGCGACCA
TCAACCACCTTCATTTTCAGTTTTGGAGTTTCAGTGATGGGCCTGATGGA
CTCATCCCTATAGAGCGATTGCCATTACGGCAACCTATGCTGACCTCCTT
TCCGGGGGTAGAGCTCTCTGTGATCGGAATAAAGCACCATCCTATTCGAT
CGATGGCATTGTCGGGGACGTCGGTGCCGGCTTTGGCCAAAGCGGGCGCA
CATTGCCTGGATGTATTGGTGAGTCGGAATATCCCTTTTAGTCTGCTTAT
GAATGGGAAGCATTTATACATCATGCCGAGGCGGTTTTCGGATCTGACGC
TTGATTTTACTTCGGTGGGATTTCCGGAAGCTGCTGGGTTGTTGTTGGTG
ATGAATGAGACGCAATGGAGGGACGAGACATTGCTGAACGCTGATATTGT
TTGGGATTTGTGGGATAAGACCTACGGTGTGAGTGGAGAGGTATTCAAAG
AGTTGGTGGAGGAGTGTACGGAGATGCCGGCTGATGAGGTGGAGGTATGA
TAATGGGGAAAAAAGGGTGGGGGGCGAAATTGAAGGGGAGGTTTTCGCGA
CGCTTACTTGGCTGTGTGCAGTGGAGTCAGCAGGCTTGATAGAGATATAT
TTTGAAAAATGTGGAATGCATACTGTAGAAGAAATCTGTGATGATGAAAA
CCTGGCCGAAATGACAAAGAATGAATTACAAGCACGCTGCAGGCTTGTGG
GAGTGTGGGTG
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protein sequence of NO01G03960.1

>NO01G03960.1-protein ID=NO01G03960.1-protein|Name=NO01G03960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MVNEQDKVPCVEPTMRPRWLSRSRGSPVSRSLPRTRGPNQVRCWLVSHKG
TKTFKFLTAILLVLPFLVVVMHFRPGRPHGAITRSAYSGAGPEETSWAAS
WPCIQGLPQGIVQDLYGIGDGKSAIDMLVYQSPVPLHSTITSSSSSSFMR
FILALGAGSKGLQGTLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAET
RHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAP
SQDLMFWYQLPQDEEGGSSRSSKSSRSSGSSSQTITTQCQPVERGDFAER
EEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFA
AELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGP
DGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMALSGTSVPALAKA
GAHCLDVLVSRNIPFSLLMNGKHLYIMPRRFSDLTLDFTSVGFPEAAGLL
LVMNETQWRDETLLNADIVWDLWDKTYGVSGEVFKELVEECTEMPADEVE
V*
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mRNA from alignment at chr1:1055163..1057382+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03960.1 ID=NO01G03960.1|Name=NO01G03960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp|location=Sequence derived from alignment at chr1:1055163..1057382+ (Nannochloropsis oceanica)
GCCTGTATAGAGCGGGTGTGCAAAGATGGGTAGGGCGTGTGGGTGGTGTG
GTGTGTGCGTGAAGTTGTGTCAACTTGTGTGATGGAGAACGAGTTGTTGA
CGATACAATGATTCGCTCATCATATCATAATCCCACCACGACAAATGGTG
AACGAACAGGACAAAGTTCCATGTGTTGAGCCCACCATGCGACCGCGATG
GCTAAGCAGAAGTAGGGGGAGCCCTGTGAGTAGAAGCTTGCCACGGACGC
GCGGCCCAAATCAAGTTCGATGTTGGTTGGTCTCGCACAAAGGTAAGCAT
TCGATATGGGCCTTCCCAAGTAAACACCCACACTAAAACCCCACCACCAC
TCTTGTCAACAGGCACCAAGACATTCAAATTCTTGACAGCTATCCTGCTA
GTCTTGCCTTTCCTAGTTGTGGTTATGCATTTTCGTCCCGGCAGGCCCCA
TGGCGCCATTACAAGAAGCGCCTACTCCGGAGCCGGACCTGAGGAGACAA
GCTGGGCCGCGTCGTGGCCGTGCATTCAGGGCTTGCCACAAGGCATAGTG
CAAGACTTGTATGGAATTGGTGACGGCAAAAGCGCGATAGATATGTTGGT
CTATCAAAGTCCTGTGCCCTTGCATTCCACCATTACCTCTTCCTCTTCGT
CGTCGTTCATGCGGTTCATTCTGGCACTGGTACGTGCTTTTGAGCACAGA
TAAATTATGACGCGAAAATACGAACGATATCTCTTATAAAGTATGTCCAT
TTCTTCATGTTTGTCACACTTTGAGCTCTTCACATCCCACCCCTCAAACC
TCAACCCCATAACAACAGGGAGCCGGCAGCAAGGGTCTCCAAGGCACCCT
TAACCCTAACGCTCTCACACTCGGCCGACTCATAAAGTACATCTGGGAGG
CTAAAGAAAAACAAGGCGACATTTTTAAAACTTCCGTCAAAGGCGCCGAG
ACACGGCACTCTCAAGGCAAAGACTTTCCGTGGGCATGTGAATTATATCG
AAACCCCGGAAGGGCTTCCAAGCCGTCTTCGATGGCAGCAACGCAAGTGA
ATCATGTCTCCATCCCCTTTGAGGAGGACATATTCAGCTTTCTTATGGCC
CCGTCGCAGGATTTGATGTTCTGGTATCAGCTGCCACAGGATGAGGAAGG
AGGTAGCAGCAGGAGCAGCAAGAGCAGCAGGAGCAGTGGCAGCAGCAGCC
AGACGATAACGACGCAATGTCAGCCAGTGGAGAGGGGGGACTTCGCGGAA
AGAGAAGAGGCACAAAAGCACCAGCACGGGGTGTTCATTAATCCCTATCC
GATTGGCGATTTGTCTGGCGTTCTTTGCCCCTTCATTTTCGAGAAGCGCC
CTCAGGTGTTGAGTGATTCATTGGACGCACTGACGGTCGGTTTGAGCTTT
GCCGCCGAGCTGCTCGCGAGCAACGAGGCTATGGATCAAGAACCGAGACA
GACAGCAAAAAAGACGAAGCTTCGATTAGGCTTTAATTCTTGGGGAGCGC
GTGCGACCATCAACCACCTTCATTTTCAGTTTTGGAGTTTCAGTGATGGG
CCTGATGGACTCATCCCTATAGAGCGATTGCCATTACGGCAACCTATGCT
GACCTCCTTTCCGGGGGTAGAGCTCTCTGTGATCGGAATAAAGCACCATC
CTATTCGATCGATGGCATTGTCGGGGACGTCGGTGCCGGCTTTGGCCAAA
GCGGGCGCACATTGCCTGGATGTATTGGTGAGTCGGAATATCCCTTTTAG
TCTGCTTATGAATGGGAAGCATTTATACATCATGCCGAGGCGGTTTTCGG
ATCTGACGCTTGATTTTACTTCGGTGGGATTTCCGGAAGCTGCTGGGTTG
TTGTTGGTGATGAATGAGACGCAATGGAGGGACGAGACATTGCTGAACGC
TGATATTGTTTGGGATTTGTGGGATAAGACCTACGGTGTGAGTGGAGAGG
TATTCAAAGAGTTGGTGGAGGAGTGTACGGAGATGCCGGCTGATGAGGTG
GAGGTATGATAATGGGGAAAAAAGGGTGGGGGGCGAAATTGAAGGGGAGG
TTTTCGCGACGCTTACTTGGCTGTGTGCAGTGGAGTCAGCAGGCTTGATA
GAGATATATTTTGAAAAATGTGGAATGCATACTGTAGAAGAAATCTGTGA
TGATGAAAACCTGGCCGAAATGACAAAGAATGAATTACAAGCACGCTGCA
GGCTTGTGGGAGTGTGGGTG
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Coding sequence (CDS) from alignment at chr1:1055163..1057382+

>NO01G03960.1 ID=NO01G03960.1|Name=NO01G03960.1|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at chr1:1055163..1057382+ (Nannochloropsis oceanica)
ATGGTGAACGAACAGGACAAAGTTCCATGTGTTGAGCCCACCATGCGACC
GCGATGGCTAAGCAGAAGTAGGGGGAGCCCTGTGAGTAGAAGCTTGCCAC
GGACGCGCGGCCCAAATCAAGTTCGATGTTGGTTGGTCTCGCACAAAGGC
ACCAAGACATTCAAATTCTTGACAGCTATCCTGCTAGTCTTGCCTTTCCT
AGTTGTGGTTATGCATTTTCGTCCCGGCAGGCCCCATGGCGCCATTACAA
GAAGCGCCTACTCCGGAGCCGGACCTGAGGAGACAAGCTGGGCCGCGTCG
TGGCCGTGCATTCAGGGCTTGCCACAAGGCATAGTGCAAGACTTGTATGG
AATTGGTGACGGCAAAAGCGCGATAGATATGTTGGTCTATCAAAGTCCTG
TGCCCTTGCATTCCACCATTACCTCTTCCTCTTCGTCGTCGTTCATGCGG
TTCATTCTGGCACTGGGAGCCGGCAGCAAGGGTCTCCAAGGCACCCTTAA
CCCTAACGCTCTCACACTCGGCCGACTCATAAAGTACATCTGGGAGGCTA
AAGAAAAACAAGGCGACATTTTTAAAACTTCCGTCAAAGGCGCCGAGACA
CGGCACTCTCAAGGCAAAGACTTTCCGTGGGCATGTGAATTATATCGAAA
CCCCGGAAGGGCTTCCAAGCCGTCTTCGATGGCAGCAACGCAAGTGAATC
ATGTCTCCATCCCCTTTGAGGAGGACATATTCAGCTTTCTTATGGCCCCG
TCGCAGGATTTGATGTTCTGGTATCAGCTGCCACAGGATGAGGAAGGAGG
TAGCAGCAGGAGCAGCAAGAGCAGCAGGAGCAGTGGCAGCAGCAGCCAGA
CGATAACGACGCAATGTCAGCCAGTGGAGAGGGGGGACTTCGCGGAAAGA
GAAGAGGCACAAAAGCACCAGCACGGGGTGTTCATTAATCCCTATCCGAT
TGGCGATTTGTCTGGCGTTCTTTGCCCCTTCATTTTCGAGAAGCGCCCTC
AGGTGTTGAGTGATTCATTGGACGCACTGACGGTCGGTTTGAGCTTTGCC
GCCGAGCTGCTCGCGAGCAACGAGGCTATGGATCAAGAACCGAGACAGAC
AGCAAAAAAGACGAAGCTTCGATTAGGCTTTAATTCTTGGGGAGCGCGTG
CGACCATCAACCACCTTCATTTTCAGTTTTGGAGTTTCAGTGATGGGCCT
GATGGACTCATCCCTATAGAGCGATTGCCATTACGGCAACCTATGCTGAC
CTCCTTTCCGGGGGTAGAGCTCTCTGTGATCGGAATAAAGCACCATCCTA
TTCGATCGATGGCATTGTCGGGGACGTCGGTGCCGGCTTTGGCCAAAGCG
GGCGCACATTGCCTGGATGTATTGGTGAGTCGGAATATCCCTTTTAGTCT
GCTTATGAATGGGAAGCATTTATACATCATGCCGAGGCGGTTTTCGGATC
TGACGCTTGATTTTACTTCGGTGGGATTTCCGGAAGCTGCTGGGTTGTTG
TTGGTGATGAATGAGACGCAATGGAGGGACGAGACATTGCTGAACGCTGA
TATTGTTTGGGATTTGTGGGATAAGACCTACGGTGTGAGTGGAGAGGTAT
TCAAAGAGTTGGTGGAGGAGTGTACGGAGATGCCGGCTGATGAGGTGGAG
GTATGA
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Synonyms
Publications