NO01G03840, NO01G03840 (gene) Nannochloropsis oceanica

Overview
NameNO01G03840
Unique NameNO01G03840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1443
Alignment locationchr1:1029733..1031175 +

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Properties
Property NameValue
Description40s ribosomal protein s14
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1029733..1031175 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR001971Ribosomal_S11
Homology
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: EWM29329.1 (40s ribosomal protein s14 [Nannochloropsis gaditana])

HSP 1 Score: 288.1 bits (736), Expect = 2.100e-74
Identity = 144/152 (94.74%), Postives = 149/152 (98.03%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            M+KRG A K++D+TTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVA KCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTP+PTDSTRRKSGRRGRRL
Sbjct:    1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDSTRRKSGRRGRRL 152
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BLAST of NO01G03840 vs. NCBI_GenBank
Match: NP_001229580.1 (ribosomal protein S14 [Strongylocentrotus purpuratus] >XP_011662799.1 PREDICTED: ribosomal protein S14 isoform X1 [Strongylocentrotus purpuratus])

HSP 1 Score: 248.4 bits (633), Expect = 1.800e-62
Identity = 124/152 (81.58%), Postives = 139/152 (91.45%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            MA R G  +  +   +NLGP+  EGE+VFGVAHIFASFNDTFVHVTDLSGRET++RVTGGMKVKADRDEASPYAAMLAAQDVA+KCK+LGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+P+DSTRRK GRRGRRL
Sbjct:    1 MAPRKGKVQKPE-VQVNLGPQVPEGENVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAIKCKDLGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: GAY35125.1 (hypothetical protein CUMW_014460 [Citrus unshiu])

HSP 1 Score: 248.1 bits (632), Expect = 2.400e-62
Identity = 124/166 (74.70%), Postives = 142/166 (85.54%), Query Frame = 0 
Query:   32 TNPQVFRLSHSSSKMAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            TNP +   S   + M++R      +++ T  LGP   +GEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:  512 TNPSLLNPSRVFAGMSRRKNREPKEENVT--LGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 675
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: GAY35126.1 (hypothetical protein CUMW_014450 [Citrus unshiu])

HSP 1 Score: 248.1 bits (632), Expect = 2.400e-62
Identity = 124/166 (74.70%), Postives = 142/166 (85.54%), Query Frame = 0 
Query:   32 TNPQVFRLSHSSSKMAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            TNP +   S   + M++R      +++ T  LGP   +GEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:   34 TNPSLLNPSRVFAGMSRRKNREPKEENVT--LGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 197
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_002732381.1 (PREDICTED: 40S ribosomal protein S14-like [Saccoglossus kowalevskii])

HSP 1 Score: 247.7 bits (631), Expect = 3.100e-62
Identity = 124/152 (81.58%), Postives = 139/152 (91.45%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            MA R G  K ++   + LGP+A EGE+VFGVAHIFASFNDTFVHVTDLSG+ET++RVTGGMKVKADRDEASPYAAMLAAQDVA KCKE+GITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+P+DSTRRK GRRGRRL
Sbjct:    1 MAPRKGKEKKEEQ-QIALGPQAVEGENVFGVAHIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDEASPYAAMLAAQDVATKCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_022101957.1 (40S ribosomal protein S14a [Acanthaster planci] >XP_022102036.1 40S ribosomal protein S14a [Acanthaster planci])

HSP 1 Score: 247.7 bits (631), Expect = 3.100e-62
Identity = 124/152 (81.58%), Postives = 139/152 (91.45%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            MA R G  + ++   ++LGP+  EGE+VFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDEASPYAAMLAAQDVA +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+P+DSTRRK GRRGRRL
Sbjct:    1 MAPRKGKVQKEE-VQVHLGPQVPEGENVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_002957120.1 (component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis] >EFJ41774.1 component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis])

HSP 1 Score: 247.3 bits (630), Expect = 4.000e-62
Identity = 123/148 (83.11%), Postives = 136/148 (91.89%), Query Frame = 0 
Query:   52 ATKLDDS--TTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            + K DD+    ++LGP   EGEHVFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDE+SPYAAMLAAQDVA KCKELGITA+HIK+RATGGN+TK+PGPGAQ ALRALAR+G+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:    6 SAKADDAPKEVVSLGPTVREGEHVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 153
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_020247312.1 (40S ribosomal protein S14-3-like [Asparagus officinalis] >ONK57133.1 uncharacterized protein A4U43_C10F16950 [Asparagus officinalis])

HSP 1 Score: 247.3 bits (630), Expect = 4.000e-62
Identity = 124/152 (81.58%), Postives = 136/152 (89.47%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            M+KR      +D+ T  LGP   EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDVA +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:    1 MSKRKNREPKEDNVT--LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: OWK59531.1 (40S ribosomal protein S14 [Lonchura striata domestica])

HSP 1 Score: 247.3 bits (630), Expect = 4.000e-62
Identity = 124/159 (77.99%), Postives = 142/159 (89.31%), Query Frame = 0 
Query:   39 LSHSSSKMAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            L H  S+MA R G  K ++   ++LGP+ AEGE+VFGV HIFASFNDTFVHVTDLSG+ET+ RVTGGMKVKADRDE+SPYAAMLAAQDVA +CKELGITA+HIK+RATGGN+TK+PGPGAQ ALRALARSG+KIGRIEDVTP+P+DSTRRK GRRGRRL
Sbjct:    5 LFHFCSEMAPRKGKEKKEEQ-VISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 162
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_020905516.1 (40S ribosomal protein S14 [Exaiptasia pallida] >KXJ11429.1 40S ribosomal protein S14 [Exaiptasia pallida])

HSP 1 Score: 246.9 bits (629), Expect = 5.200e-62
Identity = 123/152 (80.92%), Postives = 135/152 (88.82%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            MA R G         ++LGP+  EGE VFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDEASPYAAMLAAQDVA +CKE+GITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+P+DSTRRK GRRGRRL
Sbjct:   30 MAPRKGQKTQKQEENISLGPQVGEGELVFGVAHIFASFNDTFVHVTDLSGRETVSRVTGGMKVKADRDEASPYAAMLAAQDVAARCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 181
The following BLAST results are available for this feature:
BLAST of NO01G03840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29329.12.100e-7494.7440s ribosomal protein s14 [Nannochloropsis gaditan... [more]
NP_001229580.11.800e-6281.58ribosomal protein S14 [Strongylocentrotus purpurat... [more]
GAY35125.12.400e-6274.70hypothetical protein CUMW_014460 [Citrus unshiu][more]
GAY35126.12.400e-6274.70hypothetical protein CUMW_014450 [Citrus unshiu][more]
XP_002732381.13.100e-6281.58PREDICTED: 40S ribosomal protein S14-like [Saccogl... [more]
XP_022101957.13.100e-6281.5840S ribosomal protein S14a [Acanthaster planci] >X... [more]
XP_002957120.14.000e-6283.11component of cytosolic 80S ribosome and 40S small ... [more]
XP_020247312.14.000e-6281.5840S ribosomal protein S14-3-like [Asparagus offici... [more]
OWK59531.14.000e-6277.9940S ribosomal protein S14 [Lonchura striata domest... [more]
XP_020905516.15.200e-6280.9240S ribosomal protein S14 [Exaiptasia pallida] >KX... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007913NSK007913Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03840.1NO01G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577208gene_394Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g14gene1310Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03840.1NO01G03840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03840 ID=NO01G03840|Name=NO01G03840|organism=Nannochloropsis oceanica|type=gene|length=1443bp
AGCCGCTCCTCTCGCCCTCACGTCTTCTGCTCCCTTTCTTCCGCCGCCTG
GCTTTTCACGCATTCCAAACCAAGGCTCAGACAACCCTTGACCCTTAACG
TGATAACTGTTTCCAACATGAGGTCCTCGAGCAGAGATGGAGGCGAATGG
TTATTGTGCCTTAGCTCCTCTCCCATGCACCATCAGCCGCCTCCCTCACC
TCTCTACTTCGCCCCTCAATCATCACCCTACCAACCCACAGGTCTTTCGC
CTTTCCCACTCTTCATCAAAGATGgtaagtccacgcgttatggcgaagat
tggacgttgacagatgtgtattgggattgcgaatgtggttttcggtttgt
atcgcaatggtggacatgctcctttccactcgtcacgggaagaagcatca
cccttgtcgtggccttacacggctagcagccaaggaggactacagccctt
gtgtacatttatgagaaaaatgatgagtgtaacgagacacgtatgctttc
catgtccctccgacaaagcacagacacagagcaagtcctcatcatcttcc
ctcccacgtgcttccttcctttttacccacccacctaaatagGCAAAGCG
AGGAGGTGCAACCAAGCTGGACGACTCCACAACCCTGAACCTGGGCCCCA
AGGCCGCGGAAGGGGAGCACGTCTTCGGTGTCGCTCACATATTCGCTTCC
TTCAACGACACCTTCGTGCATGTCACTGATTTGTCTGGACGAGAGACCCT
GTCACGTGTCACGGGAGGGATGAAGGTCAAGGCCGATCGTGACGAGGCGT
CCCCGTACGCGGCCATGCTTGCCGCACAGGACGTGGCCGTCAAGTGCAAG
GAGCTGGGCATCACGGCCGTGCACATCAAGATGCGTGCGACGGGCGGGAA
CAAGACCAAGTCCCCGGGGCCGGGAGCGCAACATGCTTTGCGTGCGTTGG
CACGTTCGGGCTTGAAGATTGGGCGTATTGAGGATGTGACTCCTGTCCCC
ACGGATAGCACCCGCCGAAAGAGTGGTCGCCGTGGTCGTCGTTTGTAAAC
AAAGGAAGCAGAGAGTCGAAAGGGGGGACGGAGTGTGGGAGGGAAGGAGG
GTAGTAGGATGGAAAATTATGTTTATGCGATGCGGGGCGGGAGTTGCTTT
GTCTCCTTTTGTTTGTGAGCATTTAAACAAACAGAAAAGAGGCGGGACAA
GTCGCCCTTCCGCGACGAGGACGGTGAAGCGAGGAGGGGTATCAAGAGAG
GGCGCACCCACGCTCTTCTTTCCTTAACTCCTTCCCCTGGCCTTTTCACC
TTCTCTTTTCGGGATCGGGGTTTTCCTTGTTCTGGATTTCTTGTCTTGAA
GACATTTCTGGGTGGGATTTATCGGAGGTTGAAGGAGATAAGAAGATTCA
GAGGATAAAAGAAGGAATGAGGGGCTTCGCGGCCCGGAAAGGA
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protein sequence of NO01G03840.1

>NO01G03840.1-protein ID=NO01G03840.1-protein|Name=NO01G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MEANGYCALAPLPCTISRLPHLSTSPLNHHPTNPQVFRLSHSSSKMAKRG
GATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLS
RVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNK
TKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL*
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Synonyms
Publications