NO01G03840.1, NO01G03840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03840.1
Unique NameNO01G03840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1125
Alignment locationchr1:1029733..1031175 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1029733..1031175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03840.1 vs.
Match: EWM29329.1 (40s ribosomal protein s14 [Nannochloropsis gaditana])

HSP 1 Score: 288.1 bits (736), Expect = 2.100e-74
Identity = 144/152 (94.74%), Postives = 149/152 (98.03%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            M+KRG A K++D+TTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVA KCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTP+PTDSTRRKSGRRGRRL
Sbjct:    1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDSTRRKSGRRGRRL 152
The following BLAST results are available for this feature:
BLAST of NO01G03840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29329.12.100e-7494.7440s ribosomal protein s14 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03840NO01G03840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03840.1NO01G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03840.1.cds1NO01G03840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03840.1.cds2NO01G03840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03840.1 ID=NO01G03840.1|Name=NO01G03840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
AGCCGCTCCTCTCGCCCTCACGTCTTCTGCTCCCTTTCTTCCGCCGCCTG
GCTTTTCACGCATTCCAAACCAAGGCTCAGACAACCCTTGACCCTTAACG
TGATAACTGTTTCCAACATGAGGTCCTCGAGCAGAGATGGAGGCGAATGG
TTATTGTGCCTTAGCTCCTCTCCCATGCACCATCAGCCGCCTCCCTCACC
TCTCTACTTCGCCCCTCAATCATCACCCTACCAACCCACAGGTCTTTCGC
CTTTCCCACTCTTCATCAAAGATGGCAAAGCGAGGAGGTGCAACCAAGCT
GGACGACTCCACAACCCTGAACCTGGGCCCCAAGGCCGCGGAAGGGGAGC
ACGTCTTCGGTGTCGCTCACATATTCGCTTCCTTCAACGACACCTTCGTG
CATGTCACTGATTTGTCTGGACGAGAGACCCTGTCACGTGTCACGGGAGG
GATGAAGGTCAAGGCCGATCGTGACGAGGCGTCCCCGTACGCGGCCATGC
TTGCCGCACAGGACGTGGCCGTCAAGTGCAAGGAGCTGGGCATCACGGCC
GTGCACATCAAGATGCGTGCGACGGGCGGGAACAAGACCAAGTCCCCGGG
GCCGGGAGCGCAACATGCTTTGCGTGCGTTGGCACGTTCGGGCTTGAAGA
TTGGGCGTATTGAGGATGTGACTCCTGTCCCCACGGATAGCACCCGCCGA
AAGAGTGGTCGCCGTGGTCGTCGTTTGTAAACAAAGGAAGCAGAGAGTCG
AAAGGGGGGACGGAGTGTGGGAGGGAAGGAGGGTAGTAGGATGGAAAATT
ATGTTTATGCGATGCGGGGCGGGAGTTGCTTTGTCTCCTTTTGTTTGTGA
GCATTTAAACAAACAGAAAAGAGGCGGGACAAGTCGCCCTTCCGCGACGA
GGACGGTGAAGCGAGGAGGGGTATCAAGAGAGGGCGCACCCACGCTCTTC
TTTCCTTAACTCCTTCCCCTGGCCTTTTCACCTTCTCTTTTCGGGATCGG
GGTTTTCCTTGTTCTGGATTTCTTGTCTTGAAGACATTTCTGGGTGGGAT
TTATCGGAGGTTGAAGGAGATAAGAAGATTCAGAGGATAAAAGAAGGAAT
GAGGGGCTTCGCGGCCCGGAAAGGA
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protein sequence of NO01G03840.1

>NO01G03840.1-protein ID=NO01G03840.1-protein|Name=NO01G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MEANGYCALAPLPCTISRLPHLSTSPLNHHPTNPQVFRLSHSSSKMAKRG
GATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLS
RVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNK
TKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL*
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mRNA from alignment at chr1:1029733..1031175+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03840.1 ID=NO01G03840.1|Name=NO01G03840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp|location=Sequence derived from alignment at chr1:1029733..1031175+ (Nannochloropsis oceanica)
AGCCGCTCCTCTCGCCCTCACGTCTTCTGCTCCCTTTCTTCCGCCGCCTG
GCTTTTCACGCATTCCAAACCAAGGCTCAGACAACCCTTGACCCTTAACG
TGATAACTGTTTCCAACATGAGGTCCTCGAGCAGAGATGGAGGCGAATGG
TTATTGTGCCTTAGCTCCTCTCCCATGCACCATCAGCCGCCTCCCTCACC
TCTCTACTTCGCCCCTCAATCATCACCCTACCAACCCACAGGTCTTTCGC
CTTTCCCACTCTTCATCAAAGATGGTAAGTCCACGCGTTATGGCGAAGAT
TGGACGTTGACAGATGTGTATTGGGATTGCGAATGTGGTTTTCGGTTTGT
ATCGCAATGGTGGACATGCTCCTTTCCACTCGTCACGGGAAGAAGCATCA
CCCTTGTCGTGGCCTTACACGGCTAGCAGCCAAGGAGGACTACAGCCCTT
GTGTACATTTATGAGAAAAATGATGAGTGTAACGAGACACGTATGCTTTC
CATGTCCCTCCGACAAAGCACAGACACAGAGCAAGTCCTCATCATCTTCC
CTCCCACGTGCTTCCTTCCTTTTTACCCACCCACCTAAATAGGCAAAGCG
AGGAGGTGCAACCAAGCTGGACGACTCCACAACCCTGAACCTGGGCCCCA
AGGCCGCGGAAGGGGAGCACGTCTTCGGTGTCGCTCACATATTCGCTTCC
TTCAACGACACCTTCGTGCATGTCACTGATTTGTCTGGACGAGAGACCCT
GTCACGTGTCACGGGAGGGATGAAGGTCAAGGCCGATCGTGACGAGGCGT
CCCCGTACGCGGCCATGCTTGCCGCACAGGACGTGGCCGTCAAGTGCAAG
GAGCTGGGCATCACGGCCGTGCACATCAAGATGCGTGCGACGGGCGGGAA
CAAGACCAAGTCCCCGGGGCCGGGAGCGCAACATGCTTTGCGTGCGTTGG
CACGTTCGGGCTTGAAGATTGGGCGTATTGAGGATGTGACTCCTGTCCCC
ACGGATAGCACCCGCCGAAAGAGTGGTCGCCGTGGTCGTCGTTTGTAAAC
AAAGGAAGCAGAGAGTCGAAAGGGGGGACGGAGTGTGGGAGGGAAGGAGG
GTAGTAGGATGGAAAATTATGTTTATGCGATGCGGGGCGGGAGTTGCTTT
GTCTCCTTTTGTTTGTGAGCATTTAAACAAACAGAAAAGAGGCGGGACAA
GTCGCCCTTCCGCGACGAGGACGGTGAAGCGAGGAGGGGTATCAAGAGAG
GGCGCACCCACGCTCTTCTTTCCTTAACTCCTTCCCCTGGCCTTTTCACC
TTCTCTTTTCGGGATCGGGGTTTTCCTTGTTCTGGATTTCTTGTCTTGAA
GACATTTCTGGGTGGGATTTATCGGAGGTTGAAGGAGATAAGAAGATTCA
GAGGATAAAAGAAGGAATGAGGGGCTTCGCGGCCCGGAAAGGA
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Coding sequence (CDS) from alignment at chr1:1029733..1031175+

>NO01G03840.1 ID=NO01G03840.1|Name=NO01G03840.1|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr1:1029733..1031175+ (Nannochloropsis oceanica)
ATGGAGGCGAATGGTTATTGTGCCTTAGCTCCTCTCCCATGCACCATCAG
CCGCCTCCCTCACCTCTCTACTTCGCCCCTCAATCATCACCCTACCAACC
CACAGGTCTTTCGCCTTTCCCACTCTTCATCAAAGATGGCAAAGCGAGGA
GGTGCAACCAAGCTGGACGACTCCACAACCCTGAACCTGGGCCCCAAGGC
CGCGGAAGGGGAGCACGTCTTCGGTGTCGCTCACATATTCGCTTCCTTCA
ACGACACCTTCGTGCATGTCACTGATTTGTCTGGACGAGAGACCCTGTCA
CGTGTCACGGGAGGGATGAAGGTCAAGGCCGATCGTGACGAGGCGTCCCC
GTACGCGGCCATGCTTGCCGCACAGGACGTGGCCGTCAAGTGCAAGGAGC
TGGGCATCACGGCCGTGCACATCAAGATGCGTGCGACGGGCGGGAACAAG
ACCAAGTCCCCGGGGCCGGGAGCGCAACATGCTTTGCGTGCGTTGGCACG
TTCGGGCTTGAAGATTGGGCGTATTGAGGATGTGACTCCTGTCCCCACGG
ATAGCACCCGCCGAAAGAGTGGTCGCCGTGGTCGTCGTTTGTAA
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Synonyms
Publications