NO01G03750, NO01G03750 (gene) Nannochloropsis oceanica

Overview
NameNO01G03750
Unique NameNO01G03750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length913
Alignment locationchr1:1004192..1005104 -

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Properties
Property NameValue
DescriptionEmp24 gp25l p24 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1004192..1005104 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015720TMP21-related
IPR009038GOLD
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005783endoplasmic reticulum
GO:0005737cytoplasm
Homology
BLAST of NO01G03750 vs. NCBI_GenBank
Match: EWM29303.1 (emp24 gp25l p24 family protein [Nannochloropsis gaditana])

HSP 1 Score: 303.5 bits (776), Expect = 5.300e-79
Identity = 154/209 (73.68%), Postives = 172/209 (82.30%), Query Frame = 0
Query:   15 LCLILVLLLLLQGYGGAQFYIVVXXXXXXXXXXXXXXQGTLVTVEYENPAYATQNLNLVISLRSGPGTTGSNSKMIQQLQMDEEKGHIKFATVKDGFHSLCIVPSKVTKPTKIGLDVTYGKPKAFYSDLAKEAHIDLLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVAILLVTGVLQVNNLKQFFKARKLV 224
            L + L++LLL +    A+FY+V+              QGT VTV+Y+ PAYATQ+LNLVISL SGPG  G   KM+QQ+QM+EEKG  KFATVKDGFHSLCIVP  VTKPTK+GL+VTYGK  A+Y+DLAKEAHIDLLEASIM LNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQV ILLVTGVLQVNNLKQFFKAR+LV
Sbjct:   43 LRIFLMMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251          
BLAST of NO01G03750 vs. NCBI_GenBank
Match: XP_005854785.1 (emp24 gp25l p24 family protein [Nannochloropsis gaditana CCMP526] >XP_005854822.1 emp24 gp25l p24 family protein [Nannochloropsis gaditana CCMP526] >EKU21534.1 emp24 gp25l p24 family protein [Nannochloropsis gaditana CCMP526] >EKU21574.1 emp24 gp25l p24 family protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 302.4 bits (773), Expect = 1.200e-78
Identity = 152/204 (74.51%), Postives = 169/204 (82.84%), Query Frame = 0
Query:   20 VLLLLLQGYGGAQFYIVVXXXXXXXXXXXXXXQGTLVTVEYENPAYATQNLNLVISLRSGPGTTGSNSKMIQQLQMDEEKGHIKFATVKDGFHSLCIVPSKVTKPTKIGLDVTYGKPKAFYSDLAKEAHIDLLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVAILLVTGVLQVNNLKQFFKARKLV 224
            ++LLL +    A+FY+V+              QGT VTV+Y+ PAYATQ+LNLVISL SGPG  G   KM+QQ+QM+EEKG  KFATVKDGFHSLCIVP  VTKPTK+GL+VTYGK  A+Y+DLAKEAHIDLLEASIM LNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQV ILLVTGVLQVNNLKQFFKAR+LV
Sbjct:    1 MMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 204          
BLAST of NO01G03750 vs. NCBI_GenBank
Match: XP_009041616.1 (hypothetical protein AURANDRAFT_15190, partial [Aureococcus anophagefferens] >EGB03687.1 hypothetical protein AURANDRAFT_15190, partial [Aureococcus anophagefferens])

HSP 1 Score: 124.4 bits (311), Expect = 4.400e-25
Identity = 60/135 (44.44%), Postives = 89/135 (65.93%), Query Frame = 0
Query:   85 SNSKMIQQLQMDEEKGHIKFATVKDGFHSLCIVP--SKVTKPTKIGLDVTYGKPKAFYSDLAKEAHIDLLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVAILLVTGVLQVNNLKQFF 218
            +NS +  ++ +   KG    ATV +  H LC+ P  +K+    +  L+V  G    +YS++A E H+D L+  +++LN ++ +ILNEADYMK+KEV FH++ ER N AA WWPILQ+AIL++T   QV+NLK FF
Sbjct:   16 TNSVVFSKI-VSSHKGEESMATVSEANHDLCVKPVTNKLEAEFRFELEVERGHGDKYYSEMASENHMDRLQVEVVKLNDELAEILNEADYMKEKEVKFHKKAERINLAAIWWPILQIAILVLTATFQVHNLKGFF 149          
BLAST of NO01G03750 vs. NCBI_GenBank
Match: XP_004355795.1 (emp24/gp25L/p24 family protein [Cavenderia fasciculata] >EGG17311.1 emp24/gp25L/p24 family protein [Cavenderia fasciculata])

HSP 1 Score: 101.7 bits (252), Expect = 3.100e-18
Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 0
Query:  100 GHIKFATVKDGFHSLCIV--PSKVTKP---TKIGLDVTYGKPKAFYSDLAKEAHIDLLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVAILLVTGVLQVNNLKQFFKARKLV 224
            G   F T   G + +C+   PSK   P   T++ LD+  G     Y ++AK  H++ LE S+ RLN ++ QI  E  Y K +EV+F    E TNS   WW +LQ+ IL++TG+ Q+ +LK FFKA+KLV
Sbjct:   79 GRFAFQTAMGGEYKICVSTNPSKWFGPQVKTRLHLDIQVGANANDYEEIAKVEHLNNLEISVKRLNDRVTQIRKEQSYQKGREVVFRNTSESTNSRVMWWSVLQLIILVLTGMWQMRHLKSFFKAKKLV 207          
BLAST of NO01G03750 vs. NCBI_GenBank
Match: XP_020431828.1 (emp24/gp25L/p24 family protein [Heterostelium album PN500] >EFA79707.1 emp24/gp25L/p24 family protein [Heterostelium album PN500])

HSP 1 Score: 95.1 bits (235), Expect = 2.900e-16
Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 0
Query:  100 GHIKFATVKDGFHSLCIVPSK-----VTKPTKIGLDVTYGKPKAFYSDLAKEAHIDLLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVAILLVTGVLQVNNLKQFFKARKLV 224
            G   F T+  G + +CI  +       T  T++ LD+  G     Y ++AK   ++ LE S+ RLN ++ Q+  E  Y K +E+ F    E TNS   WW ILQV +L +TG+ Q+ +LK FFKA+KLV
Sbjct:   88 GRFAFQTLIGGEYKICISTNSSKWFGPTIKTRLHLDIQVGANANDYEEIAKVEQLNNLEISVKRLNDRVTQVRKEQSYQKAREITFRNTSESTNSRVMWWAILQVVVLCLTGMWQMRHLKSFFKAKKLV 216          
BLAST of NO01G03750 vs. NCBI_GenBank
Match: XP_641887.1 (hypothetical protein DDB_G0278969 [Dictyostelium discoideum AX4] >BAD05162.1 emp24/gp25L/p24 family protein [Dictyostelium discoideum] >EAL67906.1 hypothetical protein DDB_G0278969 [Dictyostelium discoideum AX4])

HSP 1 Score: 94.7 bits (234), Expect = 3.800e-16
Identity = 49/129 (37.98%), Postives = 74/129 (57.36%), Query Frame = 0
Query:  100 GHIKFATVKDGFHSLCIV--PSKVTKP---TKIGLDVTYGKPKAFYSDLAKEAHIDLLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVAILLVTGVLQVNNLKQFFKARKLV 224
            G   F+T   G H +C     SK   P   T++ L++  G     Y ++AK  H+  +E S+ RLN ++ QI  E  Y K +E++F    E TN+   WW I+Q+ +L++TGV Q+ +LK FFKA+KLV
Sbjct:   86 GRFAFSTQVGGEHKICFSTNTSKWFGPSVKTRLHLEIEGGAGANDYEEIAKVEHLTGIEISLRRLNDRVNQIRKEQSYQKGREIVFRNTSESTNARVMWWSIIQLVVLVLTGVWQMKHLKSFFKAKKLV 214          
BLAST of NO01G03750 vs. NCBI_GenBank
Match: KYR03165.1 (emp24/gp25L/p24 family protein [Tieghemostelium lacteum])

HSP 1 Score: 93.6 bits (231), Expect = 8.400e-16
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 0
Query:  100 GHIKFATVKDGFHSLCIVPSK-----VTKPTKIGLDVTYGKPKAFYSDLAKEAHIDLLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVAILLVTGVLQVNNLKQFFKARKLV 224
            G   F T   G H +C   +       +  T++ LD+  G     Y D+AK   ++ +E SI RLN ++ QI  E  Y + +E  F    E TNS   WW +LQV +L+ TGV Q+ +LK FFKA+KLV
Sbjct:   86 GRFSFTTQIGGEHKICFSTNTSRWFGPSVKTRLHLDLETGAGANDYEDIAKVEQLNSMEISIRRLNDRVNQIRKEQSYQRGREQTFRNTSESTNSRVMWWSLLQVVVLVATGVWQMRHLKSFFKAKKLV 214          
BLAST of NO01G03750 vs. NCBI_GenBank
Match: XP_012748052.1 (hypothetical protein SAMD00019534_122220, partial [Acytostelium subglobosum LB1] >GAM29046.1 hypothetical protein SAMD00019534_122220, partial [Acytostelium subglobosum LB1])

HSP 1 Score: 91.3 bits (225), Expect = 4.200e-15
Identity = 46/129 (35.66%), Postives = 74/129 (57.36%), Query Frame = 0
Query:  100 GHIKFATVKDGFHSLCIV--PSKVTKP---TKIGLDVTYGKPKAFYSDLAKEAHIDLLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVAILLVTGVLQVNNLKQFFKARKLV 224
            G   F T+  G + +C+    SK   P   T++  D+  G     Y ++AK  H++ LE ++ RLN ++ QI  E  Y K +E+ F    E TN+   WW +LQ+ +L++TG+ Q+ +LK FF+A+KLV
Sbjct:   87 GRFAFQTLMGGEYKVCVSTNSSKWFGPSIKTRLHFDILVGANANDYEEIAKADHLNQLEIALKRLNDRVTQIRKEQSYQKAREMTFRNTSESTNNRVTWWAVLQLVVLVLTGLWQMRHLKSFFRAKKLV 215          
BLAST of NO01G03750 vs. NCBI_GenBank
Match: GAX94925.1 (CMGC/CDK/CRK7 protein kinase, variant [Pythium insidiosum])

HSP 1 Score: 90.5 bits (223), Expect = 7.100e-15
Identity = 51/171 (29.82%), Postives = 93/171 (54.39%), Query Frame = 0
Query:   59 EYENPAYATQNLNLVISLRSGPGTTGSNSKMIQQLQMDEEKGHIKFATVKDGFHSLCI----VPSKVTKPTKIG--LDVTYGKPKAFYSDLAKEAHIDLLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVAILLVTGVLQVNNLKQFFKARKLV 224
            EYE+P   +  L  V+++ +  G     +K++++ ++   KG + + + ++G H +C+        + + TK+   L +  G  K  Y DLA++ H+D L+  +++L  ++  I    DY+K K  L   + E  NS A W  I+Q+ +LL+T   QV +L+QFF  +KLV
Sbjct:  383 EYESPD-TSDTLRTVVAVYAPSGDPAKPNKLMKK-EVTTSKGAVPYTSTQNGEHWVCVSLDSAEYAMPQGTKMRFVLRIAMGPSKKEYQDLARKGHMDDLQLEVLKLRDRVSAIQRNQDYIKTKRQLLQTRIESNNSKAMWVSIVQIGMLLITAFFQVQHLRQFFHKKKLV 551          
BLAST of NO01G03750 vs. NCBI_GenBank
Match: EJK75352.1 (hypothetical protein THAOC_02924 [Thalassiosira oceanica])

HSP 1 Score: 84.3 bits (207), Expect = 5.100e-13
Identity = 48/152 (31.58%), Postives = 78/152 (51.32%), Query Frame = 0
Query:   84 GSNSKMIQQLQMDEEKGHIKFATVKDGFHSLCI--VPSKVTKPTKIGLDVTY---------------GKPKAFYSDLAKEAHIDLLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVAILLVTGVLQVNNLKQFFK 219
            G+N   + Q  ++++KG I++ T  DG  S+C+  + +    PT I L VT                G      S    + H   +E ++  L ++   IL +ADY K+ EV FH+Q    N A++WWPI+Q+ +LL+TG  Q N++  FF+
Sbjct:   99 GANQAKVVQ-DLNQKKGSIEYVTQVDGKVSICVQSLTASAVSPTPISLRVTESPAGEDSLEAGLKTDGAKLDSQSQRNAKEHFSQMEKTLSSLISKTDMILRQADYAKELEVEFHEQSIAMNKASQWWPIVQLCVLLITGFTQANHMVAFFR 249          
The following BLAST results are available for this feature:
BLAST of NO01G03750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29303.15.300e-7973.68emp24 gp25l p24 family protein [Nannochloropsis ga... [more]
XP_005854785.11.200e-7874.51emp24 gp25l p24 family protein [Nannochloropsis ga... [more]
XP_009041616.14.400e-2544.44hypothetical protein AURANDRAFT_15190, partial [Au... [more]
XP_004355795.13.100e-1841.09emp24/gp25L/p24 family protein [Cavenderia fascicu... [more]
XP_020431828.12.900e-1637.98emp24/gp25L/p24 family protein [Heterostelium albu... [more]
XP_641887.13.800e-1637.98hypothetical protein DDB_G0278969 [Dictyostelium d... [more]
KYR03165.18.400e-1637.98emp24/gp25L/p24 family protein [Tieghemostelium la... [more]
XP_012748052.14.200e-1535.66hypothetical protein SAMD00019534_122220, partial ... [more]
GAX94925.17.100e-1529.82CMGC/CDK/CRK7 protein kinase, variant [Pythium ins... [more]
EJK75352.15.100e-1331.58hypothetical protein THAOC_02924 [Thalassiosira oc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007923NSK007923Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03750.1NO01G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577170gene_385Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100152g5gene1320Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03750.1NO01G03750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03750 ID=NO01G03750|Name=NO01G03750|organism=Nannochloropsis oceanica|type=gene|length=913bp
ATGCTTAGACCAAGACCAGGGGAGTTTGTCTCCCTCCTCCGCCTTTGCCT
AATTCTTGTGCTGCTACTCCTCCTCCAAGGCTACGGCGGTGCGCAATTTT
ACATCGTGGTACAGCCGgtacgtgtatgggatagggctgtgtgtgagcga
atgatgaaacaaggcgctggaagcagacattttcgcgctattccaccttg
tattcatcaaacactatcagtcacctccatcctcgcaaaattcaggctat
cggagtgttaataactggcccagcaaggatcgaacggcatgcactcccgt
gccctttcccacttaacacactcattcatccaaataaccccacaccaacc
cctaccagCACGCCGGCGAGCAATGCTTCCTAATCGAGCAACCCCAAGGC
ACCCTCGTCACCGTCGAATACGAAAATCCCGCCTATGCCACCCAAAATCT
TAACCTCGTCATTAGCCTTCGCTCGGGACCGGGCACCACCGGCAGTAACA
GCAAGATGATCCAACAATTGCAAATGGACGAAGAAAAGGGCCATATTAAA
TTCGCCACGGTCAAGGATGGCTTCCACTCGTTGTGTATTGTCCCATCCAA
GGTGACAAAACCCACCAAGATTGGCTTAGACGTGACGTATGGCAAGCCAA
AAGCCTTCTATAGTGACCTTGCTAAAGAAGCACACATCGATTTACTCGAA
GCAAGCATCATGCGTCTCAATGCTCAAATGGGCCAAATTTTGAATGAAGC
CGATTATATGAAGGATAAGGAGGTGTTGTTCCACCAGCAGTGCGAGAGGA
CAAACAGTGCTGCGAGATGGTGGCCGATACTTCAGGTGGCCATCTTGTTG
GTCACGGGCGTGTTGCAAGTGAATAATTTGAAGCAGTTTTTCAAGGCACG
GAAGCTTGTCTAG
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protein sequence of NO01G03750.1

>NO01G03750.1-protein ID=NO01G03750.1-protein|Name=NO01G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MLRPRPGEFVSLLRLCLILVLLLLLQGYGGAQFYIVVQPHAGEQCFLIEQ
PQGTLVTVEYENPAYATQNLNLVISLRSGPGTTGSNSKMIQQLQMDEEKG
HIKFATVKDGFHSLCIVPSKVTKPTKIGLDVTYGKPKAFYSDLAKEAHID
LLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVA
ILLVTGVLQVNNLKQFFKARKLV*
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Synonyms
Publications