NO01G03750.1, NO01G03750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03750.1
Unique NameNO01G03750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr1:1004192..1005104 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1004192..1005104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03750.1 vs.
Match: EWM29303.1 (emp24 gp25l p24 family protein [Nannochloropsis gaditana])

HSP 1 Score: 333.2 bits (853), Expect = 6.300e-88
Identity = 164/209 (78.47%), Postives = 183/209 (87.56%), Query Frame = 0 
Query:   15 LCLILVLLLLLQGYGGAQFYIVVQPHAGEQCFLIEQPQGTLVTVEYENPAYATQNLNLVISLRSGPGTTGSNSKMIQQLQMDEEKGHIKFATVKDGFHSLCIVPSKVTKPTKIGLDVTYGKPKAFYSDLAKEAHIDLLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVAILLVTGVLQVNNLKQFFKARKLV 224
            L + L++LLL +    A+FY+V+QP   EQCF+IEQPQGT VTV+Y+ PAYATQ+LNLVISL SGPG  G   KM+QQ+QM+EEKG  KFATVKDGFHSLCIVP  VTKPTK+GL+VTYGK  A+Y+DLAKEAHIDLLEASIM LNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQV ILLVTGVLQVNNLKQFFKAR+LV
Sbjct:   43 LRIFLMMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
The following BLAST results are available for this feature:
BLAST of NO01G03750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29303.16.300e-8878.47emp24 gp25l p24 family protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03750NO01G03750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03750.1NO01G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03750.1.cds1NO01G03750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03750.1.cds2NO01G03750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03750.1 ID=NO01G03750.1|Name=NO01G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=672bp
ATGCTTAGACCAAGACCAGGGGAGTTTGTCTCCCTCCTCCGCCTTTGCCT
AATTCTTGTGCTGCTACTCCTCCTCCAAGGCTACGGCGGTGCGCAATTTT
ACATCGTGGTACAGCCGCACGCCGGCGAGCAATGCTTCCTAATCGAGCAA
CCCCAAGGCACCCTCGTCACCGTCGAATACGAAAATCCCGCCTATGCCAC
CCAAAATCTTAACCTCGTCATTAGCCTTCGCTCGGGACCGGGCACCACCG
GCAGTAACAGCAAGATGATCCAACAATTGCAAATGGACGAAGAAAAGGGC
CATATTAAATTCGCCACGGTCAAGGATGGCTTCCACTCGTTGTGTATTGT
CCCATCCAAGGTGACAAAACCCACCAAGATTGGCTTAGACGTGACGTATG
GCAAGCCAAAAGCCTTCTATAGTGACCTTGCTAAAGAAGCACACATCGAT
TTACTCGAAGCAAGCATCATGCGTCTCAATGCTCAAATGGGCCAAATTTT
GAATGAAGCCGATTATATGAAGGATAAGGAGGTGTTGTTCCACCAGCAGT
GCGAGAGGACAAACAGTGCTGCGAGATGGTGGCCGATACTTCAGGTGGCC
ATCTTGTTGGTCACGGGCGTGTTGCAAGTGAATAATTTGAAGCAGTTTTT
CAAGGCACGGAAGCTTGTCTAG
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protein sequence of NO01G03750.1

>NO01G03750.1-protein ID=NO01G03750.1-protein|Name=NO01G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MLRPRPGEFVSLLRLCLILVLLLLLQGYGGAQFYIVVQPHAGEQCFLIEQ
PQGTLVTVEYENPAYATQNLNLVISLRSGPGTTGSNSKMIQQLQMDEEKG
HIKFATVKDGFHSLCIVPSKVTKPTKIGLDVTYGKPKAFYSDLAKEAHID
LLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVA
ILLVTGVLQVNNLKQFFKARKLV*
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mRNA from alignment at chr1:1004192..1005104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03750.1 ID=NO01G03750.1|Name=NO01G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=913bp|location=Sequence derived from alignment at chr1:1004192..1005104- (Nannochloropsis oceanica)
ATGCTTAGACCAAGACCAGGGGAGTTTGTCTCCCTCCTCCGCCTTTGCCT
AATTCTTGTGCTGCTACTCCTCCTCCAAGGCTACGGCGGTGCGCAATTTT
ACATCGTGGTACAGCCGGTACGTGTATGGGATAGGGCTGTGTGTGAGCGA
ATGATGAAACAAGGCGCTGGAAGCAGACATTTTCGCGCTATTCCACCTTG
TATTCATCAAACACTATCAGTCACCTCCATCCTCGCAAAATTCAGGCTAT
CGGAGTGTTAATAACTGGCCCAGCAAGGATCGAACGGCATGCACTCCCGT
GCCCTTTCCCACTTAACACACTCATTCATCCAAATAACCCCACACCAACC
CCTACCAGCACGCCGGCGAGCAATGCTTCCTAATCGAGCAACCCCAAGGC
ACCCTCGTCACCGTCGAATACGAAAATCCCGCCTATGCCACCCAAAATCT
TAACCTCGTCATTAGCCTTCGCTCGGGACCGGGCACCACCGGCAGTAACA
GCAAGATGATCCAACAATTGCAAATGGACGAAGAAAAGGGCCATATTAAA
TTCGCCACGGTCAAGGATGGCTTCCACTCGTTGTGTATTGTCCCATCCAA
GGTGACAAAACCCACCAAGATTGGCTTAGACGTGACGTATGGCAAGCCAA
AAGCCTTCTATAGTGACCTTGCTAAAGAAGCACACATCGATTTACTCGAA
GCAAGCATCATGCGTCTCAATGCTCAAATGGGCCAAATTTTGAATGAAGC
CGATTATATGAAGGATAAGGAGGTGTTGTTCCACCAGCAGTGCGAGAGGA
CAAACAGTGCTGCGAGATGGTGGCCGATACTTCAGGTGGCCATCTTGTTG
GTCACGGGCGTGTTGCAAGTGAATAATTTGAAGCAGTTTTTCAAGGCACG
GAAGCTTGTCTAG
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Coding sequence (CDS) from alignment at chr1:1004192..1005104-

>NO01G03750.1 ID=NO01G03750.1|Name=NO01G03750.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr1:1004192..1005104- (Nannochloropsis oceanica)
ATGCTTAGACCAAGACCAGGGGAGTTTGTCTCCCTCCTCCGCCTTTGCCT
AATTCTTGTGCTGCTACTCCTCCTCCAAGGCTACGGCGGTGCGCAATTTT
ACATCGTGGTACAGCCGCACGCCGGCGAGCAATGCTTCCTAATCGAGCAA
CCCCAAGGCACCCTCGTCACCGTCGAATACGAAAATCCCGCCTATGCCAC
CCAAAATCTTAACCTCGTCATTAGCCTTCGCTCGGGACCGGGCACCACCG
GCAGTAACAGCAAGATGATCCAACAATTGCAAATGGACGAAGAAAAGGGC
CATATTAAATTCGCCACGGTCAAGGATGGCTTCCACTCGTTGTGTATTGT
CCCATCCAAGGTGACAAAACCCACCAAGATTGGCTTAGACGTGACGTATG
GCAAGCCAAAAGCCTTCTATAGTGACCTTGCTAAAGAAGCACACATCGAT
TTACTCGAAGCAAGCATCATGCGTCTCAATGCTCAAATGGGCCAAATTTT
GAATGAAGCCGATTATATGAAGGATAAGGAGGTGTTGTTCCACCAGCAGT
GCGAGAGGACAAACAGTGCTGCGAGATGGTGGCCGATACTTCAGGTGGCC
ATCTTGTTGGTCACGGGCGTGTTGCAAGTGAATAATTTGAAGCAGTTTTT
CAAGGCACGGAAGCTTGTCTAG
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Synonyms
Publications