NO01G03710, NO01G03710 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03710 vs. NCBI_GenBank
Match: XP_005854783.1 (protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526] >XP_005854821.1 protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526] >EKU21533.1 protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526] >EKU21572.1 protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 479.2 bits (1232), Expect = 1.200e-131 Identity = 263/353 (74.50%), Postives = 290/353 (82.15%), Query Frame = 0 Query: 1 MSASPGRGRPPNSLPDLYRPVA-STTYQGSSSTQYQPPPHQATSRTNSVSSPSGGSGVFAIPVSSNTIPVGSTTYPHSDRSTIGTYVEPPPGESIGNGV--GQQQLTAIDQPNANAENLDCCTSSCASLFFKWFLLYIILITIAAVIAARLLPELGLFLLSVLPAMTLLSFLETQFRKSVIRMQMLISFFEAVLWMVPIVILENLTNYFLIVRTKLPKEGYCGMCILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTGIVRAFTSVPLHCATGLIIGTSLAERKFFEQDTERWYKTLILPVLIHGTYDFASFVLASGNL 351 MS SP R R N DLYRPVA S Y GSSSTQYQPP S T + SS + A P N +P +++YP+SDRST GTY PP G++ +G+ G QQ TA+D+PNAN E+ D CT+SCAS F KWF YI+LIT AA+IA+R L ELGL LLSVLPA+TLLSFLE +FRKSVIRMQMLI+FFEAVLWM+PIVILEN+TNYFLIVRT LPK+G CGMCILS+FLQAYLIAG FEES KYLAVRRII KSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGT IVRAFTSVPLHCATGLIIGTSLAERKFF+QDTERWYKTLILPVLIHGTYDFASF+ ASGNL Sbjct: 1 MSLSPNR-RTVNPSSDLYRPVAISNGYPGSSSTQYQPPLPHTLSGTTTASSGA------ATPFPPNGMPAVASSYPYSDRSTTGTYAGPPQGDANNSGLESGHQQPTAVDRPNANLESTDYCTTSCASSFCKWFSGYILLITAAALIASRALRELGLVLLSVLPAITLLSFLEMRFRKSVIRMQMLITFFEAVLWMIPIVILENVTNYFLIVRTNLPKDGLCGMCILSSFLQAYLIAGFFEESAKYLAVRRIIYKSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTAIVRAFTSVPLHCATGLIIGTSLAERKFFQQDTERWYKTLILPVLIHGTYDFASFLFASGNL 346
BLAST of NO01G03710 vs. NCBI_GenBank
Match: EWM25903.1 (hypothetical protein Naga_100048g23 [Nannochloropsis gaditana]) HSP 1 Score: 146.0 bits (367), Expect = 2.400e-31 Identity = 90/241 (37.34%), Postives = 137/241 (56.85%), Query Frame = 0 Query: 123 CASLFFKWFLLYIILITIAAVIAARLLPELGLFLLSVLPAMTLLSFLETQFRKSVIRMQMLISFFEAVLWMVPIVILENLTNYFLIVRTKLPKEG---------YCGMCILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVVDPRALVVYSCCAGSAFGTVEDL-MYNLSYGLGTGIVRAFTSVPLHCATGLIIGTSLAERKFF----------EQDTERWYKTLILPVLIHGTYDFASF 344 C LY + +A VIA L GL LLS+LPA+ ++++ + F +SV+R +M+++FF A+L M P+V++ENL Y ++ ++ L G LSAF++A+L+A LFEE K+LA+RR+ + +V DPRA+V Y CAG A GTVE+L +Y +YG+ ++RA +VP+H TG++ +LAE F WY+ + PVL HG +DF F Sbjct: 146 CGRSIIVMLALYSAALAVATVIAHVQL-HSGLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFVDF 385
BLAST of NO01G03710 vs. NCBI_GenBank
Match: CEM01683.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 125.9 bits (315), Expect = 2.600e-25 Identity = 84/241 (34.85%), Postives = 134/241 (55.60%), Query Frame = 0 Query: 118 CCTSSCASLFFKWFLLYIILITIAAVIAARLLPELGLFLLSVLPAMTLLSFLETQFRKSVIRMQMLISFFEAVLWMVPIVILENLTNYFLI--VRTKLPKEGYCGMCILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVVDPRALVVYSCCAGSAFGTVEDLMY-----NLSYGLG------TGIVRAFTSVPLHCATGLIIGTSLAERKFFEQDTE-RWYKTLILPVLIHGTYDFASFV 345 CC S+ F + + + + + + A LG LL+V P++ +LS+ +R+ V QML +F EA+ WM+P+V + L + + V+ + + + IL A ++AY++A L EES+KY+ RR++ K +V DPR+L+ YS A + F VE+ +Y N S LG G++R SVP H TG+IIG L RKF + + R+Y+ ++ P+LIHGTY+F V Sbjct: 255 CCGSAVV------FCVVYVGVAVGSALLAGTDETLGRMLLAVTPSILILSYFTLIYRRHVFLTQMLYTFLEAIGWMIPVVCVRVLVEWAMASHVQRWMDERNETAL-ILWALVEAYILAALMEESLKYVCARRVLWKDHVADPRSLIGYSLAAANGFALVENWLYIFSDSNESSVLGLPEASVAGVLRMLISVPGHSLTGIIIGAILGRRKFLGKYFQTRFYRIMVWPILIHGTYNFVLVV 488
BLAST of NO01G03710 vs. NCBI_GenBank
Match: CEM00780.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 120.9 bits (302), Expect = 8.400e-24 Identity = 91/269 (33.83%), Postives = 140/269 (52.04%), Query Frame = 0 Query: 89 PPGESIGNGVGQQQLTAIDQPNANAENLDCCTSSCASLFFKWFLLYIILITIAAVIAARL-----LPELGLFLLSVLPAMTLLSFLETQFRKSVIRMQMLISFFEAVLWMVPIVILENLTNYFLIVRTKLPKEGYCGMCILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTGIVRAFT-------SVPLHCATGLIIGTSLAERKFFEQDTERWYKTLILPVLIHGTYDFASFVL 346 PPG+ G G ++ T Q ++D T C + + LLY+I ++A V+AA L L +GL LL+V+P++ + ++ +F++ V Q SF EA+L+M + + M I F+ AY+IAG +EE++KY+A +R++ K YV DP +L+VY+ A + F VE+ +Y +G T + R T +VP H G IIG LA RKF ++T + + L LPVL+H TYDF F L Sbjct: 67 PPGQLPGPGPLVERQT---QQIPAVPSVDFFTGKCVNRTAAFLLLYVI-ASVAGVVAAYLFTVAGLGAIGLALLTVMPSLLIQGYVHWRFKEHVFLSQEFFSFLEAILYMXXXXXXXXXXXXXXXXXLR-RADDTLAMAIFIHFISAYIIAGFYEETLKYIATKRLLWKDYVADPPSLLVYAVAASNGFALVENFIY--VFGSNTALSRIMTATLRMALAVPGHLFYGAIIGGYLAIRKFKNEET-HYCRILALPVLLHDTYDFVIFTL 327
BLAST of NO01G03710 vs. NCBI_GenBank
Match: OLP93543.1 (Protease PrsW [Symbiodinium microadriaticum]) HSP 1 Score: 116.3 bits (290), Expect = 2.100e-22 Identity = 80/235 (34.04%), Postives = 128/235 (54.47%), Query Frame = 0 Query: 120 TSSCASLFFKWFLLYIILITIAAVIAARLLPELGLFLLSVLPAMTLLSFLETQFRKSVIRMQMLISFFEAVLWMVPIVILENLTNYFL-----------IVRTKLPKEGYCGMCILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTGIVRAFTSVPLHCATGLIIGTSLAERKFF--EQDTERWYKTLILPVLIHGTYDFA 342 T+SC F+ + T V+ LLP LGL LLS +P + SF++ F+KSV QM ISFFEA+ W++P++ + + + L + L E C+ +QAYL+ EE +KY+ VRRI+ +V DP AL Y CAG F +E+++Y + L T ++RA T+VP H GL+ G L+E++F ++ + T +LP+++HG+++F+ Sbjct: 102 TTSCLGWGVSIFVT-LAFCTALCVLPYVLLPPLGLALLSFVPVLVFGSFVQVYFQKSVKLSQMAISFFEAIAWLMPLISIILIIYFPLGWRDWVSDCEEVSEASLASEVEVD-CLGKRAIQAYLMTAFLEELLKYVCVRRILWFPFVADPTALCCYGGCAGLGFAALENVLYVGTGSLATALLRAGTAVPNHLIYGLLHGAFLSEQRFSLKQRSCPSFILTPMLPMILHGSHNFS 334
BLAST of NO01G03710 vs. NCBI_GenBank
Match: WP_105015771.1 (protease PrsW [Polaribacter porphyrae] >PQJ79167.1 protease PrsW [Polaribacter porphyrae]) HSP 1 Score: 85.9 bits (211), Expect = 3.000e-13 Identity = 58/196 (29.59%), Postives = 95/196 (48.47%), Query Frame = 0 Query: 152 LGLFLLSVLPAMTLLSFL--ETQFRKSVIRMQMLISFFEAVLWMVPIVILENLTNYFLIVRTKLPKEGYCGMCILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVV-DPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTGIVRAFTSVPLHCATGLIIGTSLAERKFFEQDTERWYKTLILPVLIHGTYDFASFV 345 + L LL++ P ++ F+ + +F K I + A L ++ L L+NYF +V IL F++A++I L EE KY+ VR KS +P +VY+ F +E+++Y YG+ G RAFT+VP H G+++G + + KF + + L++ L HG YDF F+ Sbjct: 1 MNLLLLAIAPVTIIIVFIYVKDKFEKEPISFLIKNFLLGAFLSVIITFFLSFLSNYFFVVTD--------AKSILQQFIKAFIIVALVEEFSKYIIVRFYAQKSKEFNEPFDGIVYAVMVSMGFAALENILYVFQYGVNVGFTRAFTAVPAHATFGILMGYFMGKAKFSKNRVQLNLIGLLVATLFHGAYDFFLFI 188
BLAST of NO01G03710 vs. NCBI_GenBank
Match: WP_079737035.1 (protease PrsW [Polaribacter sp. KT 15] >SHM77377.1 Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Polaribacter sp. KT 15]) HSP 1 Score: 84.7 bits (208), Expect = 6.700e-13 Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 0 Query: 223 ILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVV-DPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTGIVRAFTSVPLHCATGLIIGTSLAERKFFEQDTERWYKTLILPVLIHGTYDFASFV 345 I FL+A+++ L EE KYL VR K+ +P +VY+ F +E+++Y YG GTG++RAFT+VP H G+++G + + KF + + L+L + HG YDF F+ Sbjct: 66 IFHQFLKAFVVVALVEEFSKYLIVRFYSQKNKEFNEPFDGIVYAVMVSMGFAALENVIYTFQYGAGTGLIRAFTAVPAHATFGILMGYFMGKAKFSKNRVQLNLIGLLLATIFHGAYDFFLFI 188
BLAST of NO01G03710 vs. NCBI_GenBank
Match: WP_077809809.1 (protease PrsW [Polaribacter sp. BM10] >AQS93694.1 protease PrsW [Polaribacter sp. BM10]) HSP 1 Score: 84.7 bits (208), Expect = 6.700e-13 Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 0 Query: 223 ILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVV-DPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTGIVRAFTSVPLHCATGLIIGTSLAERKFFEQDTERWYKTLILPVLIHGTYDFASFV 345 I FL+A+++ L EE KYL VR K+ +P +VY+ F +E+++Y YG GTG++RAFT+VP H G+++G + + KF + + L+L + HG YDF F+ Sbjct: 66 IFHQFLKAFVVVALVEEFSKYLIVRFYSQKNKEFNEPFDGIVYAVMVSMGFAALENVIYTFQYGAGTGLIRAFTAVPAHATFGILMGYFMGKAKFSKNRVQLNLIGLLLATIFHGAYDFFLFI 188
BLAST of NO01G03710 vs. NCBI_GenBank
Match: OIP46769.1 (protease PrsW [Flavobacteriaceae bacterium CG2_30_31_66] >PIV95824.1 PrsW family intramembrane metalloprotease [Flavobacteriaceae bacterium CG17_big_fil_post_rev_8_21_14_2_50_31_13] >PIX11157.1 PrsW family intramembrane metalloprotease [Flavobacteriaceae bacterium CG_4_8_14_3_um_filter_31_8] >PIY16237.1 PrsW family intramembrane metalloprotease [Flavobacteriaceae bacterium CG_4_10_14_3_um_filter_31_253] >PIZ11340.1 PrsW family intramembrane metalloprotease [Flavobacteriaceae bacterium CG_4_10_14_0_8_um_filter_31_99] >PJC10613.1 PrsW family intramembrane metalloprotease [Flavobacteriaceae bacterium CG_4_9_14_0_8_um_filter_31_91]) HSP 1 Score: 84.0 bits (206), Expect = 1.100e-12 Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 0 Query: 223 ILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVV-DPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTGIVRAFTSVPLHCATGLIIGTSLAERKFFEQDTERWYKTLILPVLIHGTYDFASFV 345 I F++A+L+ GL EE KY+ VR KS +P +VY+ F +E+++Y YG TGIVRAFT+VP H G+++G + KF + L++ HGTYDF FV Sbjct: 66 IYQQFIKAFLVVGLVEEFSKYIIVRFYAQKSSEFNEPFDGIVYAVMVSMGFAALENVLYVFQYGASTGIVRAFTAVPAHATFGILMGYFMGLAKFSKNKQLLNLTGLLVATFFHGTYDFFLFV 188
BLAST of NO01G03710 vs. NCBI_GenBank
Match: CEM09853.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 83.2 bits (204), Expect = 1.900e-12 Identity = 75/249 (30.12%), Postives = 116/249 (46.59%), Query Frame = 0 Query: 134 YIILITIAAVIAARL----LPELGLFLLSVLPAMTLLSFLETQFRKSVIRMQMLISFFEAVLWMVPIVILENLTNYF--LIVRTKLPKE----------GYCGMCILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVVDPRALVVYSCCAGSAFGTVEDLMYNL------------------SYGLGTGIVRAFTSVPLHCATGLIIGTSLAERKFFEQDTERWY---KTLILPVLIHGTYDF-ASFV 345 Y++L+ +A++ A L G+ LL+ P++ + +L +F + QM E+ LWM +++ L L+VR P G CILS LI G+ EES+K+LAVRR++ K +V DPRAL+VY + + F +E+ Y + S G+ T R SVP HC G + G+ LA KFF + W+ ++ P L H +DF A+F+ Sbjct: 44 YLLLVVVASLFALGFVLGQLVNTGIMLLATGPSIIIQLYLIQRFTNQFLPEQMFFVVCESTLWMFLLIVPNVLVMLAAKLLVRIFFPMTPPNEIEELLVGNVLWCILSP-----LIIGIVEESIKFLAVRRVLWKDHVCDPRALIVYGITSANTFAVLENWNYVIGTVASPTTPGLRLGPRWVSNGIWTAWQRLIVSVPGHCLDGSLQGSILAHYKFF--NFLGWFGVWAAVLFPALSHWLFDFVATFI 285 The following BLAST results are available for this feature:
BLAST of NO01G03710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following gene feature(s) are orthologous to this gene:
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03710 ID=NO01G03710|Name=NO01G03710|organism=Nannochloropsis oceanica|type=gene|length=2797bpback to top protein sequence of NO01G03710.1 >NO01G03710.1-protein ID=NO01G03710.1-protein|Name=NO01G03710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bpback to top protein sequence of NO01G03710.2 >NO01G03710.2-protein ID=NO01G03710.2-protein|Name=NO01G03710.2|organism=Nannochloropsis oceanica|type=polypeptide|length=383bpback to top protein sequence of NO01G03710.3 >NO01G03710.3-protein ID=NO01G03710.3-protein|Name=NO01G03710.3|organism=Nannochloropsis oceanica|type=polypeptide|length=383bpback to top Synonyms
Publications
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