NO01G03710.3, NO01G03710.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03710.3
Unique NameNO01G03710.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2477
Alignment locationchr1:993555..996351 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:993555..996351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03710.3 vs.
Match: XP_005854783.1 (protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526]; XP_005854821.1 protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526]; EKU21533.1 protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526]; EKU21572.1 protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 479.2 bits (1232), Expect = 1.200e-131
Identity = 263/353 (74.50%), Postives = 290/353 (82.15%), Query Frame = 0
Query:    1 MSASPGRGRPPNSLPDLYRPVA-STTYQGSSSTQYQPPPHQATSRTNSVSSPSGGSGVFAIPVSSNTIPVGSTTYPHSDRSTIGTYVEPPPGESIGNGV--GQQQLTAIDQPNANAENLDCCTSSCASLFFKWFLLYIILITIAAVIAARLLPELGLFLLSVLPAMTLLSFLETQFRKSVIRMQMLISFFEAVLWMVPIVILENLTNYFLIVRTKLPKEGYCGMCILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTGIVRAFTSVPLHCATGLIIGTSLAERKFFEQDTERWYKTLILPVLIHGTYDFASFVLASGNL 351
            MS SP R R  N   DLYRPVA S  Y GSSSTQYQPP     S T + SS +      A P   N +P  +++YP+SDRST GTY  PP G++  +G+  G QQ TA+D+PNAN E+ D CT+SCAS F KWF  YI+LIT AA+IA+R L ELGL LLSVLPA+TLLSFLE +FRKSVIRMQMLI+FFEAVLWM+PIVILEN+TNYFLIVRT LPK+G CGMCILS+FLQAYLIAG FEES KYLAVRRII KSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGT IVRAFTSVPLHCATGLIIGTSLAERKFF+QDTERWYKTLILPVLIHGTYDFASF+ ASGNL
Sbjct:    1 MSLSPNR-RTVNPSSDLYRPVAISNGYPGSSSTQYQPPLPHTLSGTTTASSGA------ATPFPPNGMPAVASSYPYSDRSTTGTYAGPPQGDANNSGLESGHQQPTAVDRPNANLESTDYCTTSCASSFCKWFSGYILLITAAALIASRALRELGLVLLSVLPAITLLSFLEMRFRKSVIRMQMLITFFEAVLWMIPIVILENVTNYFLIVRTNLPKDGLCGMCILSSFLQAYLIAGFFEESAKYLAVRRIIYKSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTAIVRAFTSVPLHCATGLIIGTSLAERKFFQQDTERWYKTLILPVLIHGTYDFASFLFASGNL 346          
The following BLAST results are available for this feature:
BLAST of NO01G03710.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854783.11.200e-13174.50protease required for anti-sigma degradation [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03710NO01G03710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03710.3NO01G03710.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03710.3.cds1NO01G03710.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03710.3.cds2NO01G03710.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03710.3.cds3NO01G03710.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03710.3.cds4NO01G03710.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03710.3 ID=NO01G03710.3|Name=NO01G03710.3|organism=Nannochloropsis oceanica|type=mRNA|length=2477bp
ATTTGCCTCCTTTTCCTTGCCCAACTCCTCACCATGTCACATGCGCCACT
GTCCAGGACAACTGGGTCTACGGTTGCCAGGGTGGCGGGTTTTTGGCACG
TTTTCAATTACGTGACATCAGCTTGTCCTCGTCCCGCATCATTGCCTCGC
CTCAACATCGAAGCACAACAAACGTGCCCACCGCGCCCTGTCCCCTCATA
TTTCACACCATTGTAGGGACAATTACGATGAGTGCCTCACCAGGGCGAGG
AAGGCCTCCTAATAGCCTCCCAGACCTTTATCGGCCCGTCGCCTCCACCA
CTTACCAAGGGAGCAGCAGTACCCAGTATCAACCACCTCCGCATCAGGCC
ACCTCTCGCACCAACTCGGTCTCCTCTCCCAGCGGTGGTAGTGGCGTGTT
TGCAATTCCTGTTTCCTCCAACACCATTCCGGTAGGCTCCACTACCTACC
CGCACAGTGACCGCTCTACAATTGGCACCTACGTGGAGCCACCACCAGGA
GAGAGCATAGGGAATGGCGTGGGCCAGCAGCAGCTGACTGCGATTGATCA
ACCCAATGCCAACGCGGAGAATCTGGACTGCTGCACCAGCTCTTGCGCCT
CTCTCTTTTTTAAGTGGTTTTTACTGTACATAATTTTGATCACGATAGCT
GCCGTTATAGCAGCCAGACTTCTGCCAGAGCTAGGATTGTTCCTTCTGTC
TGTGCTTCCTGCCATGACCTTGCTCTCCTTCCTTGAGACACAATTCCGCA
AGTCTGTCATTCGCATGCAAATGCTCATCTCCTTTTTTGAAGCCGTCCTC
TGGATGGTGCCCATCGTCATTTTGGAGAACCTGACCAATTATTTCCTAAT
TGTTCGGACCAAGCTGCCCAAAGAGGGATACTGCGGCATGTGCATTCTCT
CCGCATTCCTGCAAGCCTACTTGATAGCCGGGCTCTTCGAGGAATCCGTT
AAGTACCTTGCCGTCCGCCGGATCATCAACAAATCGTACGTGGTGGATCC
GCGGGCCTTGGTCGTATACAGCTGTTGTGCAGGGAGCGCCTTTGGTACGG
TGGAGGACCTGATGTACAATTTGAGTTATGGCCTAGGGACGGGGATTGTC
AGGGCGTTTACAAGCGTGCCGCTGCACTGCGCGACGGGCTTGATCATCGG
GACAAGCCTGGCGGAGCGCAAGTTTTTTGAGCAGGACACAGAAAGATGGT
ATAAGACGTTAATTTTGCCAGTGTTAATTCACGGTACATACGACTTTGCT
TCTTTCGTGCTCGCCTCTGGGAATCTAGGTACGTGGCATGCGGAGGAAAA
GTATTCCCGGAATGTACCGGCCCTGTCGGGGAGGGTCTATGTAGATCCAC
GCTGCCTTGTCGCGAGGGCATTGTGAGAAAATTTCGACCGTTTCATTTTA
CAGCGGTTGACAGCGATGGTATCGCCAAGGGCCCGCATCCATTTACAGCC
CTACCGACCATGTATACGCGCAAAGAAGGTCACTCAAACAAATCCACATG
CCCGTTGTTTTGTGAGCAAAAAGCACATTCCCGCCCTAATCCTTCGTGGG
TCGTCGCCCTTATCTACTGAAGTGCGCACGCATGTTGAACACAACAACCA
AAAACAACATGCAAGAAAACGATGCTGGTGCAGCTCGGCCTCCTGGTGAT
GCAACGCCCGTGTTCACTTAGAGAGTGCGGACAGCAGAGGGGATGAGACA
GTGCAAGGATGTTTGAAATGAATAAGGTCTTACGCACTCATATCTTCCAT
ATCTCCTGTCTCAACTTTCTTCCACATGACAGCCATTGTCGGGTTCGCCA
TCGGGGTCGTCATCGTCATCTCCAGTTATGTCTACGTCCGAAAACGTAAG
TTCCTCAATTGTCTTTCATTTTCTCATTCCTTCCCACTCTCTTCTTCTCC
CCCTCCAATTCGTCCCTTTCCCTCACAACACCACTATATGTCATTCAAAC
TTTCGAACAGGTGTGCTCTTCCTGCTCAAGGCCTTCCCAATAGAGTTAAA
TGCACACGAAATGATGATCAACGGCGAGATCGAAGCCCCAGGGATCGGCT
GCTGCAAACCTTCCTTGTGTCCAACCTGCTATTTGTAGCCAAGCGGACTT
GAGAGTGTCGTTGAAATAACATAGAGTTAGGAATGGCAGATGATGAATGA
CAGAACAAACGGCAGTGAATGAAGAGGAAAGAACCGACCTCAAAGCGGAT
GGTATGCAATAATGAGGAAGGAGAAGGTCATAGGAAATGTGTAAATATGG
AAATGAGGTCGGAAAATACGACAGGGGAACAAGCAATAAAGATGCAAGAA
CGAGTGTATGATGGAGCGAGTATAAACAGGCCCACCAATTCTATCCAGCT
TTTGTTACATGAAGAAACAAAGCATGCGATTCTGATGATTTGTGTTGTGT
GCGCGTATTTTGTGACAGCGCTTCAGGGCATGGTCCCTATCGGTCTCACT
TAAAAACTATCAACTCAACACAACTCA
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protein sequence of NO01G03710.3

>NO01G03710.3-protein ID=NO01G03710.3-protein|Name=NO01G03710.3|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MSASPGRGRPPNSLPDLYRPVASTTYQGSSSTQYQPPPHQATSRTNSVSS
PSGGSGVFAIPVSSNTIPVGSTTYPHSDRSTIGTYVEPPPGESIGNGVGQ
QQLTAIDQPNANAENLDCCTSSCASLFFKWFLLYIILITIAAVIAARLLP
ELGLFLLSVLPAMTLLSFLETQFRKSVIRMQMLISFFEAVLWMVPIVILE
NLTNYFLIVRTKLPKEGYCGMCILSAFLQAYLIAGLFEESVKYLAVRRII
NKSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTGIVRAFTSVPLH
CATGLIIGTSLAERKFFEQDTERWYKTLILPVLIHGTYDFASFVLASGNL
GTWHAEEKYSRNVPALSGRVYVDPRCLVARAL*
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mRNA from alignment at chr1:993555..996351+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03710.3 ID=NO01G03710.3|Name=NO01G03710.3|organism=Nannochloropsis oceanica|type=mRNA|length=2797bp|location=Sequence derived from alignment at chr1:993555..996351+ (Nannochloropsis oceanica)
ATTTGCCTCCTTTTCCTTGCCCAACTCCTCACCATGTCACATGCGCCACT GTCCAGGACAACTGGGTCTACGGTTGCCAGGGTGGCGGGTTTTTGGCACG TTTTCAATTACGTGACATCAGCTTGTCCTCGTCCCGCATCATTGCCTCGC CTCAACATCGAAGCACAACAAACGTGCCCACCGCGCCCTGTCCCCTCATA TTTCACACCATTGTAGGGACAATTACGATGAGTGCCTCACCAGGGCGAGG AAGGCCTCCTAATAGCCTCCCAGACCTTTATCGGCCCGTCGCCTCCACCA CTTACCAAGGGAGCAGCAGTACCCAGTATCAACCACCTCCGCATCAGGCC ACCTCTCGCACCAACTCGGTCTCCTCTCCCAGCGGTGGTAGTGGCGTGTT TGCAATTCCTGTTTCCTCCAACACCATTCCGGTAGGCTCCACTACCTACC CGCACAGTGACCGCTCTACAATTGGCACCTACGTGGAGCCACCACCAGGA GAGAGCATAGGGAATGGCGTGGGCCAGCAGCAGCTGACTGCGATTGATCA ACCCAATGCCAACGCGGAGAATCTGGACTGCTGCACCAGCTCTTGCGCCT CTCTCTTTTTTAAGTGGTTTTTACTGTACATAATTTTGATCACGATAGCT GCCGTTATAGCAGCCAGACTTCTGCCAGAGCTAGGATTGTTCCTTCTGTC TGTGCTTCCTGCCATGACCTTGCTCTCCTTCCTTGAGACACAATTCCGCA AGTCTGTCATTCGCATGCAAGTAAGTACTTGCAATACACTCTCTTATCCC CCTCCGCTCCCCCCTTTCTTCCACCACATTGTTGATGCAAACCTATTAAG CCCCCTCCTTTCCCTTCTTGCCTCCCTCCCTCACCAGATGCTCATCTCCT TTTTTGAAGCCGTCCTCTGGATGGTGCCCATCGTCATTTTGGAGAACCTG ACCAATTATTTCCTAATTGTTCGGACCAAGCTGCCCAAAGAGGGATACTG CGGCATGTGCATTCTCTCCGCATTCCTGCAAGCCTACTTGATAGCCGGGC TCTTCGAGGTTAGTTAGTTTTTGGTTCTTTTCCTTACTTCCTTTTGGTCG TCACCCGACACAACGCCACTTCCCTGCCCGTCCTTCTCCCGTGTGTTTTA CAGGAATCCGTTAAGTACCTTGCCGTCCGCCGGATCATCAACAAATCGTA CGTGGTGGATCCGCGGGCCTTGGTCGTATACAGCTGTTGTGCAGGGAGCG CCTTTGGTACGGTGGAGGACCTGATGTACAATTTGAGTTATGGCCTAGGG ACGGGGATTGTCAGGGCGTTTACAAGCGTGCCGCTGCACTGCGCGACGGG CTTGATCATCGGGACAAGCCTGGCGGAGCGCAAGTTTTTTGAGCAGGACA CAGAAAGATGGTATAAGACGTTAATTTTGCCAGTGTTAATTCACGGTACG TGGATATATAGTTCTTCATTCTTCTTCTCTAGCAGTCTCTGAGGTGGAAG GCCCAGTCTCACCTTCTCTTTCGTTTTCCTTGCCCCCTTTTGCCACTTTA TAGGTACATACGACTTTGCTTCTTTCGTGCTCGCCTCTGGGAATCTAGGT ACGTGGCATGCGGAGGAAAAGTATTCCCGGAATGTACCGGCCCTGTCGGG GAGGGTCTATGTAGATCCACGCTGCCTTGTCGCGAGGGCATTGTGAGAAA ATTTCGACCGTTTCATTTTACAGCGGTTGACAGCGATGGTATCGCCAAGG GCCCGCATCCATTTACAGCCCTACCGACCATGTATACGCGCAAAGAAGGT CACTCAAACAAATCCACATGCCCGTTGTTTTGTGAGCAAAAAGCACATTC CCGCCCTAATCCTTCGTGGGTCGTCGCCCTTATCTACTGAAGTGCGCACG CATGTTGAACACAACAACCAAAAACAACATGCAAGAAAACGATGCTGGTG CAGCTCGGCCTCCTGGTGATGCAACGCCCGTGTTCACTTAGAGAGTGCGG ACAGCAGAGGGGATGAGACAGTGCAAGGATGTTTGAAATGAATAAGGTCT TACGCACTCATATCTTCCATATCTCCTGTCTCAACTTTCTTCCACATGAC AGCCATTGTCGGGTTCGCCATCGGGGTCGTCATCGTCATCTCCAGTTATG TCTACGTCCGAAAACGTAAGTTCCTCAATTGTCTTTCATTTTCTCATTCC TTCCCACTCTCTTCTTCTCCCCCTCCAATTCGTCCCTTTCCCTCACAACA CCACTATATGTCATTCAAACTTTCGAACAGGTGTGCTCTTCCTGCTCAAG GCCTTCCCAATAGAGTTAAATGCACACGAAATGATGATCAACGGCGAGAT CGAAGCCCCAGGGATCGGCTGCTGCAAACCTTCCTTGTGTCCAACCTGCT ATTTGTAGCCAAGCGGACTTGAGAGTGTCGTTGAAATAACATAGAGTTAG GAATGGCAGATGATGAATGACAGAACAAACGGCAGTGAATGAAGAGGAAA GAACCGACCTCAAAGCGGATGGTATGCAATAATGAGGAAGGAGAAGGTCA TAGGAAATGTGTAAATATGGAAATGAGGTCGGAAAATACGACAGGGGAAC AAGCAATAAAGATGCAAGAACGAGTGTATGATGGAGCGAGTATAAACAGG CCCACCAATTCTATCCAGCTTTTGTTACATGAAGAAACAAAGCATGCGAT TCTGATGATTTGTGTTGTGTGCGCGTATTTTGTGACAGCGCTTCAGGGCA TGGTCCCTATCGGTCTCACTTAAAAACTATCAACTCAACACAACTCA
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Coding sequence (CDS) from alignment at chr1:993555..996351+

>NO01G03710.3 ID=NO01G03710.3|Name=NO01G03710.3|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr1:993555..996351+ (Nannochloropsis oceanica)
ATGAGTGCCTCACCAGGGCGAGGAAGGCCTCCTAATAGCCTCCCAGACCT
TTATCGGCCCGTCGCCTCCACCACTTACCAAGGGAGCAGCAGTACCCAGT
ATCAACCACCTCCGCATCAGGCCACCTCTCGCACCAACTCGGTCTCCTCT
CCCAGCGGTGGTAGTGGCGTGTTTGCAATTCCTGTTTCCTCCAACACCAT
TCCGGTAGGCTCCACTACCTACCCGCACAGTGACCGCTCTACAATTGGCA
CCTACGTGGAGCCACCACCAGGAGAGAGCATAGGGAATGGCGTGGGCCAG
CAGCAGCTGACTGCGATTGATCAACCCAATGCCAACGCGGAGAATCTGGA
CTGCTGCACCAGCTCTTGCGCCTCTCTCTTTTTTAAGTGGTTTTTACTGT
ACATAATTTTGATCACGATAGCTGCCGTTATAGCAGCCAGACTTCTGCCA
GAGCTAGGATTGTTCCTTCTGTCTGTGCTTCCTGCCATGACCTTGCTCTC
CTTCCTTGAGACACAATTCCGCAAGTCTGTCATTCGCATGCAAATGCTCA
TCTCCTTTTTTGAAGCCGTCCTCTGGATGGTGCCCATCGTCATTTTGGAG
AACCTGACCAATTATTTCCTAATTGTTCGGACCAAGCTGCCCAAAGAGGG
ATACTGCGGCATGTGCATTCTCTCCGCATTCCTGCAAGCCTACTTGATAG
CCGGGCTCTTCGAGGAATCCGTTAAGTACCTTGCCGTCCGCCGGATCATC
AACAAATCGTACGTGGTGGATCCGCGGGCCTTGGTCGTATACAGCTGTTG
TGCAGGGAGCGCCTTTGGTACGGTGGAGGACCTGATGTACAATTTGAGTT
ATGGCCTAGGGACGGGGATTGTCAGGGCGTTTACAAGCGTGCCGCTGCAC
TGCGCGACGGGCTTGATCATCGGGACAAGCCTGGCGGAGCGCAAGTTTTT
TGAGCAGGACACAGAAAGATGGTATAAGACGTTAATTTTGCCAGTGTTAA
TTCACGGTACATACGACTTTGCTTCTTTCGTGCTCGCCTCTGGGAATCTA
GGTACGTGGCATGCGGAGGAAAAGTATTCCCGGAATGTACCGGCCCTGTC
GGGGAGGGTCTATGTAGATCCACGCTGCCTTGTCGCGAGGGCATTGTGA
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Synonyms
Publications