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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:993555..996351 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03710.1 vs.
Match: XP_005854783.1 (protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526]; XP_005854821.1 protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526]; EKU21533.1 protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526]; EKU21572.1 protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 542.7 bits (1397), Expect = 9.700e-151 Identity = 300/399 (75.19%), Postives = 330/399 (82.71%), Query Frame = 0
Query: 1 MSASPGRGRPPNSLPDLYRPVA-STTYQGSSSTQYQPPPHQATSRTNSVSSPSGGSGVFAIPVSSNTIPVGSTTYPHSDRSTIGTYVEPPPGESIGNGV--GQQQLTAIDQPNANAENLDCCTSSCASLFFKWFLLYIILITIAAVIAARLLPELGLFLLSVLPAMTLLSFLETQFRKSVIRMQMLISFFEAVLWMVPIVILENLTNYFLIVRTKLPKEGYCGMCILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTGIVRAFTSVPLHCATGLIIGTSLAERKFFEQDTERWYKTLILPVLIHGTYDFASFVLASGNLAIVGFAIGVVIVISSYVYVRKRVLFLLKAFPIELNAHEMMINGEIE 397
MS SP R R N DLYRPVA S Y GSSSTQYQPP S T + SS + A P N +P +++YP+SDRST GTY PP G++ +G+ G QQ TA+D+PNAN E+ D CT+SCAS F KWF YI+LIT AA+IA+R L ELGL LLSVLPA+TLLSFLE +FRKSVIRMQMLI+FFEAVLWM+PIVILEN+TNYFLIVRT LPK+G CGMCILS+FLQAYLIAG FEES KYLAVRRII KSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGT IVRAFTSVPLHCATGLIIGTSLAERKFF+QDTERWYKTLILPVLIHGTYDFASF+ ASGNLAI GFAIGVVIVISSYVYVRKRVLFLLKAFP EL+AH M+ N + E
Sbjct: 1 MSLSPNR-RTVNPSSDLYRPVAISNGYPGSSSTQYQPPLPHTLSGTTTASSGA------ATPFPPNGMPAVASSYPYSDRSTTGTYAGPPQGDANNSGLESGHQQPTAVDRPNANLESTDYCTTSCASSFCKWFSGYILLITAAALIASRALRELGLVLLSVLPAITLLSFLEMRFRKSVIRMQMLITFFEAVLWMIPIVILENVTNYFLIVRTNLPKDGLCGMCILSSFLQAYLIAGFFEESAKYLAVRRIIYKSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTAIVRAFTSVPLHCATGLIIGTSLAERKFFQQDTERWYKTLILPVLIHGTYDFASFLFASGNLAIAGFAIGVVIVISSYVYVRKRVLFLLKAFPEELDAHNMIANEKPE 392
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03710.1 ID=NO01G03710.1|Name=NO01G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1858bp ATTTGCCTCCTTTTCCTTGCCCAACTCCTCACCATGTCACATGCGCCACT GTCCAGGACAACTGGGTCTACGGTTGCCAGGGTGGCGGGTTTTTGGCACG TTTTCAATTACGTGACATCAGCTTGTCCTCGTCCCGCATCATTGCCTCGC CTCAACATCGAAGCACAACAAACGTGCCCACCGCGCCCTGTCCCCTCATA TTTCACACCATTGTAGGGACAATTACGATGAGTGCCTCACCAGGGCGAGG AAGGCCTCCTAATAGCCTCCCAGACCTTTATCGGCCCGTCGCCTCCACCA CTTACCAAGGGAGCAGCAGTACCCAGTATCAACCACCTCCGCATCAGGCC ACCTCTCGCACCAACTCGGTCTCCTCTCCCAGCGGTGGTAGTGGCGTGTT TGCAATTCCTGTTTCCTCCAACACCATTCCGGTAGGCTCCACTACCTACC CGCACAGTGACCGCTCTACAATTGGCACCTACGTGGAGCCACCACCAGGA GAGAGCATAGGGAATGGCGTGGGCCAGCAGCAGCTGACTGCGATTGATCA ACCCAATGCCAACGCGGAGAATCTGGACTGCTGCACCAGCTCTTGCGCCT CTCTCTTTTTTAAGTGGTTTTTACTGTACATAATTTTGATCACGATAGCT GCCGTTATAGCAGCCAGACTTCTGCCAGAGCTAGGATTGTTCCTTCTGTC TGTGCTTCCTGCCATGACCTTGCTCTCCTTCCTTGAGACACAATTCCGCA AGTCTGTCATTCGCATGCAAATGCTCATCTCCTTTTTTGAAGCCGTCCTC TGGATGGTGCCCATCGTCATTTTGGAGAACCTGACCAATTATTTCCTAAT TGTTCGGACCAAGCTGCCCAAAGAGGGATACTGCGGCATGTGCATTCTCT CCGCATTCCTGCAAGCCTACTTGATAGCCGGGCTCTTCGAGGAATCCGTT AAGTACCTTGCCGTCCGCCGGATCATCAACAAATCGTACGTGGTGGATCC GCGGGCCTTGGTCGTATACAGCTGTTGTGCAGGGAGCGCCTTTGGTACGG TGGAGGACCTGATGTACAATTTGAGTTATGGCCTAGGGACGGGGATTGTC AGGGCGTTTACAAGCGTGCCGCTGCACTGCGCGACGGGCTTGATCATCGG GACAAGCCTGGCGGAGCGCAAGTTTTTTGAGCAGGACACAGAAAGATGGT ATAAGACGTTAATTTTGCCAGTGTTAATTCACGGTACATACGACTTTGCT TCTTTCGTGCTCGCCTCTGGGAATCTAGCCATTGTCGGGTTCGCCATCGG GGTCGTCATCGTCATCTCCAGTTATGTCTACGTCCGAAAACGTGTGCTCT TCCTGCTCAAGGCCTTCCCAATAGAGTTAAATGCACACGAAATGATGATC AACGGCGAGATCGAAGCCCCAGGGATCGGCTGCTGCAAACCTTCCTTGTG TCCAACCTGCTATTTGTAGCCAAGCGGACTTGAGAGTGTCGTTGAAATAA CATAGAGTTAGGAATGGCAGATGATGAATGACAGAACAAACGGCAGTGAA TGAAGAGGAAAGAACCGACCTCAAAGCGGATGGTATGCAATAATGAGGAA GGAGAAGGTCATAGGAAATGTGTAAATATGGAAATGAGGTCGGAAAATAC GACAGGGGAACAAGCAATAAAGATGCAAGAACGAGTGTATGATGGAGCGA GTATAAACAGGCCCACCAATTCTATCCAGCTTTTGTTACATGAAGAAACA AAGCATGCGATTCTGATGATTTGTGTTGTGTGCGCGTATTTTGTGACAGC GCTTCAGGGCATGGTCCCTATCGGTCTCACTTAAAAACTATCAACTCAAC ACAACTCA back to topprotein sequence of NO01G03710.1 >NO01G03710.1-protein ID=NO01G03710.1-protein|Name=NO01G03710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp MSASPGRGRPPNSLPDLYRPVASTTYQGSSSTQYQPPPHQATSRTNSVSS PSGGSGVFAIPVSSNTIPVGSTTYPHSDRSTIGTYVEPPPGESIGNGVGQ QQLTAIDQPNANAENLDCCTSSCASLFFKWFLLYIILITIAAVIAARLLP ELGLFLLSVLPAMTLLSFLETQFRKSVIRMQMLISFFEAVLWMVPIVILE NLTNYFLIVRTKLPKEGYCGMCILSAFLQAYLIAGLFEESVKYLAVRRII NKSYVVDPRALVVYSCCAGSAFGTVEDLMYNLSYGLGTGIVRAFTSVPLH CATGLIIGTSLAERKFFEQDTERWYKTLILPVLIHGTYDFASFVLASGNL AIVGFAIGVVIVISSYVYVRKRVLFLLKAFPIELNAHEMMINGEIEAPGI GCCKPSLCPTCYL* back to topmRNA from alignment at chr1:993555..996351+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03710.1 ID=NO01G03710.1|Name=NO01G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2797bp|location=Sequence derived from alignment at chr1:993555..996351+ (Nannochloropsis oceanica) ATTTGCCTCCTTTTCCTTGCCCAACTCCTCACCATGTCACATGCGCCACT
GTCCAGGACAACTGGGTCTACGGTTGCCAGGGTGGCGGGTTTTTGGCACG
TTTTCAATTACGTGACATCAGCTTGTCCTCGTCCCGCATCATTGCCTCGC
CTCAACATCGAAGCACAACAAACGTGCCCACCGCGCCCTGTCCCCTCATA
TTTCACACCATTGTAGGGACAATTACGATGAGTGCCTCACCAGGGCGAGG
AAGGCCTCCTAATAGCCTCCCAGACCTTTATCGGCCCGTCGCCTCCACCA
CTTACCAAGGGAGCAGCAGTACCCAGTATCAACCACCTCCGCATCAGGCC
ACCTCTCGCACCAACTCGGTCTCCTCTCCCAGCGGTGGTAGTGGCGTGTT
TGCAATTCCTGTTTCCTCCAACACCATTCCGGTAGGCTCCACTACCTACC
CGCACAGTGACCGCTCTACAATTGGCACCTACGTGGAGCCACCACCAGGA
GAGAGCATAGGGAATGGCGTGGGCCAGCAGCAGCTGACTGCGATTGATCA
ACCCAATGCCAACGCGGAGAATCTGGACTGCTGCACCAGCTCTTGCGCCT
CTCTCTTTTTTAAGTGGTTTTTACTGTACATAATTTTGATCACGATAGCT
GCCGTTATAGCAGCCAGACTTCTGCCAGAGCTAGGATTGTTCCTTCTGTC
TGTGCTTCCTGCCATGACCTTGCTCTCCTTCCTTGAGACACAATTCCGCA
AGTCTGTCATTCGCATGCAAGTAAGTACTTGCAATACACTCTCTTATCCC
CCTCCGCTCCCCCCTTTCTTCCACCACATTGTTGATGCAAACCTATTAAG
CCCCCTCCTTTCCCTTCTTGCCTCCCTCCCTCACCAGATGCTCATCTCCT
TTTTTGAAGCCGTCCTCTGGATGGTGCCCATCGTCATTTTGGAGAACCTG
ACCAATTATTTCCTAATTGTTCGGACCAAGCTGCCCAAAGAGGGATACTG
CGGCATGTGCATTCTCTCCGCATTCCTGCAAGCCTACTTGATAGCCGGGC
TCTTCGAGGTTAGTTAGTTTTTGGTTCTTTTCCTTACTTCCTTTTGGTCG
TCACCCGACACAACGCCACTTCCCTGCCCGTCCTTCTCCCGTGTGTTTTA
CAGGAATCCGTTAAGTACCTTGCCGTCCGCCGGATCATCAACAAATCGTA
CGTGGTGGATCCGCGGGCCTTGGTCGTATACAGCTGTTGTGCAGGGAGCG
CCTTTGGTACGGTGGAGGACCTGATGTACAATTTGAGTTATGGCCTAGGG
ACGGGGATTGTCAGGGCGTTTACAAGCGTGCCGCTGCACTGCGCGACGGG
CTTGATCATCGGGACAAGCCTGGCGGAGCGCAAGTTTTTTGAGCAGGACA
CAGAAAGATGGTATAAGACGTTAATTTTGCCAGTGTTAATTCACGGTACG
TGGATATATAGTTCTTCATTCTTCTTCTCTAGCAGTCTCTGAGGTGGAAG
GCCCAGTCTCACCTTCTCTTTCGTTTTCCTTGCCCCCTTTTGCCACTTTA
TAGGTACATACGACTTTGCTTCTTTCGTGCTCGCCTCTGGGAATCTAGGT
ACGTGGCATGCGGAGGAAAAGTATTCCCGGAATGTACCGGCCCTGTCGGG
GAGGGTCTATGTAGATCCACGCTGCCTTGTCGCGAGGGCATTGTGAGAAA
ATTTCGACCGTTTCATTTTACAGCGGTTGACAGCGATGGTATCGCCAAGG
GCCCGCATCCATTTACAGCCCTACCGACCATGTATACGCGCAAAGAAGGT
CACTCAAACAAATCCACATGCCCGTTGTTTTGTGAGCAAAAAGCACATTC
CCGCCCTAATCCTTCGTGGGTCGTCGCCCTTATCTACTGAAGTGCGCACG
CATGTTGAACACAACAACCAAAAACAACATGCAAGAAAACGATGCTGGTG
CAGCTCGGCCTCCTGGTGATGCAACGCCCGTGTTCACTTAGAGAGTGCGG
ACAGCAGAGGGGATGAGACAGTGCAAGGATGTTTGAAATGAATAAGGTCT
TACGCACTCATATCTTCCATATCTCCTGTCTCAACTTTCTTCCACATGAC
AGCCATTGTCGGGTTCGCCATCGGGGTCGTCATCGTCATCTCCAGTTATG
TCTACGTCCGAAAACGTAAGTTCCTCAATTGTCTTTCATTTTCTCATTCC
TTCCCACTCTCTTCTTCTCCCCCTCCAATTCGTCCCTTTCCCTCACAACA
CCACTATATGTCATTCAAACTTTCGAACAGGTGTGCTCTTCCTGCTCAAG
GCCTTCCCAATAGAGTTAAATGCACACGAAATGATGATCAACGGCGAGAT
CGAAGCCCCAGGGATCGGCTGCTGCAAACCTTCCTTGTGTCCAACCTGCT
ATTTGTAGCCAAGCGGACTTGAGAGTGTCGTTGAAATAACATAGAGTTAG
GAATGGCAGATGATGAATGACAGAACAAACGGCAGTGAATGAAGAGGAAA
GAACCGACCTCAAAGCGGATGGTATGCAATAATGAGGAAGGAGAAGGTCA
TAGGAAATGTGTAAATATGGAAATGAGGTCGGAAAATACGACAGGGGAAC
AAGCAATAAAGATGCAAGAACGAGTGTATGATGGAGCGAGTATAAACAGG
CCCACCAATTCTATCCAGCTTTTGTTACATGAAGAAACAAAGCATGCGAT
TCTGATGATTTGTGTTGTGTGCGCGTATTTTGTGACAGCGCTTCAGGGCA
TGGTCCCTATCGGTCTCACTTAAAAACTATCAACTCAACACAACTCA back to topCoding sequence (CDS) from alignment at chr1:993555..996351+ >NO01G03710.1 ID=NO01G03710.1|Name=NO01G03710.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr1:993555..996351+ (Nannochloropsis oceanica) ATGAGTGCCTCACCAGGGCGAGGAAGGCCTCCTAATAGCCTCCCAGACCT TTATCGGCCCGTCGCCTCCACCACTTACCAAGGGAGCAGCAGTACCCAGT ATCAACCACCTCCGCATCAGGCCACCTCTCGCACCAACTCGGTCTCCTCT CCCAGCGGTGGTAGTGGCGTGTTTGCAATTCCTGTTTCCTCCAACACCAT TCCGGTAGGCTCCACTACCTACCCGCACAGTGACCGCTCTACAATTGGCA CCTACGTGGAGCCACCACCAGGAGAGAGCATAGGGAATGGCGTGGGCCAG CAGCAGCTGACTGCGATTGATCAACCCAATGCCAACGCGGAGAATCTGGA CTGCTGCACCAGCTCTTGCGCCTCTCTCTTTTTTAAGTGGTTTTTACTGT ACATAATTTTGATCACGATAGCTGCCGTTATAGCAGCCAGACTTCTGCCA GAGCTAGGATTGTTCCTTCTGTCTGTGCTTCCTGCCATGACCTTGCTCTC CTTCCTTGAGACACAATTCCGCAAGTCTGTCATTCGCATGCAAATGCTCA TCTCCTTTTTTGAAGCCGTCCTCTGGATGGTGCCCATCGTCATTTTGGAG AACCTGACCAATTATTTCCTAATTGTTCGGACCAAGCTGCCCAAAGAGGG ATACTGCGGCATGTGCATTCTCTCCGCATTCCTGCAAGCCTACTTGATAG CCGGGCTCTTCGAGGAATCCGTTAAGTACCTTGCCGTCCGCCGGATCATC AACAAATCGTACGTGGTGGATCCGCGGGCCTTGGTCGTATACAGCTGTTG TGCAGGGAGCGCCTTTGGTACGGTGGAGGACCTGATGTACAATTTGAGTT ATGGCCTAGGGACGGGGATTGTCAGGGCGTTTACAAGCGTGCCGCTGCAC TGCGCGACGGGCTTGATCATCGGGACAAGCCTGGCGGAGCGCAAGTTTTT TGAGCAGGACACAGAAAGATGGTATAAGACGTTAATTTTGCCAGTGTTAA TTCACGGTACATACGACTTTGCTTCTTTCGTGCTCGCCTCTGGGAATCTA GCCATTGTCGGGTTCGCCATCGGGGTCGTCATCGTCATCTCCAGTTATGT CTACGTCCGAAAACGTGTGCTCTTCCTGCTCAAGGCCTTCCCAATAGAGT TAAATGCACACGAAATGATGATCAACGGCGAGATCGAAGCCCCAGGGATC GGCTGCTGCAAACCTTCCTTGTGTCCAACCTGCTATTTGTAG back to top
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