NO01G03290, NO01G03290 (gene) Nannochloropsis oceanica

Overview
NameNO01G03290
Unique NameNO01G03290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length430
Alignment locationchr1:863255..863684 +

Link to JBrowse

Properties
Property NameValue
DescriptionSelenoprotein SelK/SelG
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:863255..863684 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024491Se_SelK/SelG
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO01G03290 vs. NCBI_GenBank
Match: EWM29273.1 (Selenoprotein SelK/SelG [Nannochloropsis gaditana])

HSP 1 Score: 112.5 bits (280), Expect = 8.300e-22
Identity = 80/105 (76.19%), Postives = 86/105 (81.90%), Query Frame = 0 
Query:    1 MAYVRSDGTVLAKKSFVQSITDAFWGFCNAIGLFFSTFSPSTREERRAQXXXXXXXXXXXXXXXXXXXXXXXXXXLRHRGANIHGLRQSSQATVPGGGCSGGGCG 106
            M YV  DGT+ AKK+ +QSI DA WG  N +GLFFSTF PSTREERR Q     XXXXXXXXXXXXXXXXXXXXXLRHRG+NIH LRQS+QATVPGGGCSGG CG
Sbjct:    1 MVYVERDGTMTAKKTMIQSIMDAAWGLVNVVGLFFSTFVPSTREERRVQ-ALERXXXXXXXXXXXXXXXXXXXXXLRHRGSNIHSLRQSTQATVPGGGCSGGTCG 104
The following BLAST results are available for this feature:
BLAST of NO01G03290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29273.18.300e-2276.19Selenoprotein SelK/SelG [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007990NSK007990Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03290.1NO01G03290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100029g10gene1366Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03290.1NO01G03290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03290 ID=NO01G03290|Name=NO01G03290|organism=Nannochloropsis oceanica|type=gene|length=430bp
ATGGCGTACGTAAGGAGCGACGgtacgtcttgcatgtctcgcggtccttt
tgtcggtgaaggctgtcttttgatggtgctaagctactgcctccttgtcg
tcattccctctcgtttctcgccccccacccacagGCACTGTGCTGGCCAA
AAAGAGCTTTGTGCAATCCATCACGGACGCGTTCTGGGGTTTTTGCAATG
CTATTGGCTTATTCTTTTCCACATTCTCGCCATCCACGCGGGAGGAGCGA
CGTGCCCAGGCGCTAGAACGCCGGGGTGCACGCAGAGGGGCGAGCAGCAG
CAGCGTTGGGACCGGGGGCGGCGGAGGCAGCAACACGTTGCGACACCGGG
GCGCCAACATTCACGGTCTACGTCAATCCTCTCAAGCCACGGTGCCGGGT
GGAGGGTGCTCTGGCGGGGGCTGTGGCTAA
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protein sequence of NO01G03290.1

>NO01G03290.1-protein ID=NO01G03290.1-protein|Name=NO01G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MAYVRSDGTVLAKKSFVQSITDAFWGFCNAIGLFFSTFSPSTREERRAQA
LERRGARRGASSSSVGTGGGGGSNTLRHRGANIHGLRQSSQATVPGGGCS
GGGCG*
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Synonyms
Publications