NO01G03290.1, NO01G03290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03290.1
Unique NameNO01G03290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length318
Alignment locationchr1:863255..863684 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:863255..863684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03290.1 vs.
Match: EWM29273.1 (Selenoprotein SelK/SelG [Nannochloropsis gaditana])

HSP 1 Score: 142.1 bits (357), Expect = 9.700e-31
Identity = 75/105 (71.43%), Postives = 82/105 (78.10%), Query Frame = 0 
Query:    1 MAYVRSDGTVLAKKSFVQSITDAFWGFCNAIGLFFSTFSPSTREERRAQALERRGARRGASSSSVGTGGGGGSNTLRHRGANIHGLRQSSQATVPGGGCSGGGCG 106
            M YV  DGT+ AKK+ +QSI DA WG  N +GLFFSTF PSTREERR QALERRGAR G +SSS G  GG G   LRHRG+NIH LRQS+QATVPGGGCSGG CG
Sbjct:    1 MVYVERDGTMTAKKTMIQSIMDAAWGLVNVVGLFFSTFVPSTREERRVQALERRGARGGRTSSSGGNAGGAGGG-LRHRGSNIHSLRQSTQATVPGGGCSGGTCG 104
The following BLAST results are available for this feature:
BLAST of NO01G03290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29273.19.700e-3171.43Selenoprotein SelK/SelG [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03290NO01G03290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03290.1NO01G03290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03290.1.cds1NO01G03290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03290.1.cds2NO01G03290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03290.1 ID=NO01G03290.1|Name=NO01G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=318bp
ATGGCGTACGTAAGGAGCGACGGCACTGTGCTGGCCAAAAAGAGCTTTGT
GCAATCCATCACGGACGCGTTCTGGGGTTTTTGCAATGCTATTGGCTTAT
TCTTTTCCACATTCTCGCCATCCACGCGGGAGGAGCGACGTGCCCAGGCG
CTAGAACGCCGGGGTGCACGCAGAGGGGCGAGCAGCAGCAGCGTTGGGAC
CGGGGGCGGCGGAGGCAGCAACACGTTGCGACACCGGGGCGCCAACATTC
ACGGTCTACGTCAATCCTCTCAAGCCACGGTGCCGGGTGGAGGGTGCTCT
GGCGGGGGCTGTGGCTAA
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protein sequence of NO01G03290.1

>NO01G03290.1-protein ID=NO01G03290.1-protein|Name=NO01G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MAYVRSDGTVLAKKSFVQSITDAFWGFCNAIGLFFSTFSPSTREERRAQA
LERRGARRGASSSSVGTGGGGGSNTLRHRGANIHGLRQSSQATVPGGGCS
GGGCG*
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mRNA from alignment at chr1:863255..863684+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03290.1 ID=NO01G03290.1|Name=NO01G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=430bp|location=Sequence derived from alignment at chr1:863255..863684+ (Nannochloropsis oceanica)
ATGGCGTACGTAAGGAGCGACGGTACGTCTTGCATGTCTCGCGGTCCTTT
TGTCGGTGAAGGCTGTCTTTTGATGGTGCTAAGCTACTGCCTCCTTGTCG
TCATTCCCTCTCGTTTCTCGCCCCCCACCCACAGGCACTGTGCTGGCCAA
AAAGAGCTTTGTGCAATCCATCACGGACGCGTTCTGGGGTTTTTGCAATG
CTATTGGCTTATTCTTTTCCACATTCTCGCCATCCACGCGGGAGGAGCGA
CGTGCCCAGGCGCTAGAACGCCGGGGTGCACGCAGAGGGGCGAGCAGCAG
CAGCGTTGGGACCGGGGGCGGCGGAGGCAGCAACACGTTGCGACACCGGG
GCGCCAACATTCACGGTCTACGTCAATCCTCTCAAGCCACGGTGCCGGGT
GGAGGGTGCTCTGGCGGGGGCTGTGGCTAA
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Coding sequence (CDS) from alignment at chr1:863255..863684+

>NO01G03290.1 ID=NO01G03290.1|Name=NO01G03290.1|organism=Nannochloropsis oceanica|type=CDS|length=318bp|location=Sequence derived from alignment at chr1:863255..863684+ (Nannochloropsis oceanica)
ATGGCGTACGTAAGGAGCGACGGCACTGTGCTGGCCAAAAAGAGCTTTGT
GCAATCCATCACGGACGCGTTCTGGGGTTTTTGCAATGCTATTGGCTTAT
TCTTTTCCACATTCTCGCCATCCACGCGGGAGGAGCGACGTGCCCAGGCG
CTAGAACGCCGGGGTGCACGCAGAGGGGCGAGCAGCAGCAGCGTTGGGAC
CGGGGGCGGCGGAGGCAGCAACACGTTGCGACACCGGGGCGCCAACATTC
ACGGTCTACGTCAATCCTCTCAAGCCACGGTGCCGGGTGGAGGGTGCTCT
GGCGGGGGCTGTGGCTAA
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Synonyms
Publications