NO01G03060, NO01G03060 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03060 vs. NCBI_GenBank
Match: EWM29236.1 (hypothetical protein Naga_100119g17 [Nannochloropsis gaditana]) HSP 1 Score: 562.8 bits (1449), Expect = 9.600e-157 Identity = 289/453 (63.80%), Postives = 329/453 (72.63%), Query Frame = 0
Query: 6 LQPAKAWVRRRATVMAYGALMLVAMVLVIRHDGWVGKEQARSRRGSLGARALASQKKVRYERLRDHSAPRSTLRDASTASTFGVAADPSQLPPHEVFPAPCDCRHCDV------------LPXXXXXXXXXXXFPFHAFP-PPTTRDGRIASSPXXXXXXXXXXXXXXXXXXXXWLGVGLPPRDLQDTHVRIIIRVHHLQEAATRSLIWAMRAQPEAAKFQAGAPKFTVDFALVATEAQGLPVVQRIAQDEWERTR-------SRGINIA-PSPDVFVADTTGSFYALASNRSAPYRCSEADKAEYQNKGGENYVRLHCAYDNHAYYQATDVGVLDVLRGCPWCTHVLVTNSDNSYHPDFLLHTLSSDADLVTTDFVDHGERMVTADWRWGKVDLGGVLASRKVVMKTGGFIASLPPGAGPQETHDNDYWFVHRGLDLGATTAVVGKLLFFHN 438
LQPAKAW+RRR +MAY AL+LVA+ L+ RHDGW GK + R + LAS K+ YE R+H+ RS LR S + VAAD SQLPPH V P PCDC+HC+V LP FH P P +TR+ +A P WLGVG PP + + HVR+IIRVHHLQEAAT SLIWAMRAQP+AA+ Q G+P+FTVDFALVATE QGLPVV RIA+ EW R R S ++++ P+PDVFVADTTGSFYALASNRSAPYRCS AD+AEY +KGG+ YVRLHC YDNHAYYQATDVG+LDVLRGC WCTHVLVTNSDNSYHPDFLLH LS ADLVTTDF+DHGER+V ADWRWG+VDLGGVLAS+ VVMKTGGFIASLPP AGPQETHDNDYWFVHRGL+LGATTA+V KL+FFHN
Sbjct: 13 LQPAKAWMRRRVGIMAYTALLLVAVALIARHDGWSGKRSSSRSRAAXXXXXLASPKR-HYESSREHAPARSRLR--SVTQAYRVAADSSQLPPHRVLPLPCDCQHCEVRQSYSTSPPMPTLPFPTGTAPARESGIFHHDPFPSSTREDMLAPEP------------------AAWLGVGRPPHRVGEYHVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGGFIASLPPDAGPQETHDNDYWFVHRGLELGATTALVHKLMFFHN 444
BLAST of NO01G03060 vs. NCBI_GenBank
Match: EWM20344.1 (hypothetical protein Naga_100252g10 [Nannochloropsis gaditana]) HSP 1 Score: 197.2 bits (500), Expect = 1.100e-46 Identity = 113/298 (37.92%), Postives = 158/298 (53.02%), Query Frame = 0
Query: 181 HVRIIIRVHHLQEAATRSLIWAMRAQPEAAKFQAGAPKFTVDFALVATEAQGLPVVQRIAQDEWERTRSRGINIAPSPDVFVADTTGSFYALASNRSAPYRCSEADKAEYQNKGGENYVRLHCAYDNHAYYQATDVGVLDVLRGCPWCTHVLVTNSDNSYHPDFLLHTL-----SSDA------------------------------------DLVTTDFVDHGERMVTADWRWGKVDLGGVLASRKVVMKTGGFIASLPPGAGPQETHDNDYWFVHRGLDLGATTAVVGKLLFFHN 438
HVR IIRVHH Q + ++ ++ Q + + P ++DFALV TE +G+PVV IA+ W T P P V+ D +F+ +A+ R+AP++CS+ + E N+ G+ + C YDNH +YQATDV V ++ R C WCTH ++TN DN YHP++L TL SDA D+VTTDF G + W G VDLGG+L S++++M GFIASLP G+ ++ H+ D+ F R L LGA VV +LLFFHN
Sbjct: 91 HVRFIIRVHHEQADLVKGMVHSLLYQQQLS-VSFPYPTLSMDFALVPTEVRGIPVVDSIARYFWLNTAE------PFPHVYALDLDQTFFDVAAERAAPFKCSKEEAREVANRAGKAAMIKICRYDNHVFYQATDVAVAELCR-CTWCTHAVITNGDNCYHPNYLKETLLELDPPSDAQYGTVQERSDSSSGLKGQIRDKKTRRMLAWERGEQWDMVTTDFTTSG-ILSRGAWGLGFVDLGGILFSKRILMSAQGFIASLPSGSRAEQAHNADWLFAARALRLGARAHVVNQLLFFHN 379
BLAST of NO01G03060 vs. NCBI_GenBank
Match: XP_005854167.1 (hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526] >XP_005854270.1 hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >EKU22088.1 hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >EKU22190.1 hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 119.8 bits (299), Expect = 2.100e-23 Identity = 68/182 (37.36%), Postives = 96/182 (52.75%), Query Frame = 0
Query: 259 DVFVADTTGSFYALASNRSAPYRCSEADKAEYQNKGGENYVRLHCAYDNHAYYQATDVGVLDVLRGCPWCTHVLVTNSDNSYHPDFLLHTLSSDADLVTTDFVDHGERMVTADWRWGKVDLGGVLASRKVVMKTGG--FIASLPPGAGPQETHDNDYWFVHRGLDLGATTAVV-GKLLFFHN 438
D+++ + +FY R + C++A + Y + + V +C +D++ YY ATD + + C CTHVLVTN DN Y P FL T+ ADL F H + T G +DLG VL R V+ G F++SLP AGP+E HD DYW V L+ G + AV +LL +HN
Sbjct: 7 DLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLQETVRQSADLAIVGFT-HRNQAQTPVLGVGGLDLGAVL-MRVGVLDHGRRLFLSSLPVDAGPKEVHDADYWMVVNALERGLSFAVCKNQLLMYHN 186
BLAST of NO01G03060 vs. NCBI_GenBank
Match: EWM25935.1 (hypothetical protein Naga_100134g8 [Nannochloropsis gaditana]) HSP 1 Score: 106.7 bits (265), Expect = 1.900e-19 Identity = 62/178 (34.83%), Postives = 91/178 (51.12%), Query Frame = 0
Query: 178 QDTHVRIIIRVHHLQEAATRSLIWAMRAQPEAAKFQAGAPKFTVDFALVATEAQGLPVVQRIAQDEWERTRSRGINIAPSPDVFVADTTGSFYALASNRSAPYRCSEADKAEYQNKGGENYVRLHCAYDNHAYYQATDVGVLDVLRGCPWCTHVLVTNSDNSYHPDFLLHTLSSDADL 356
+ HVR++IR H ++ RSLI+ +RAQ E QAG F DF LV TE L QR+ + +N+ D+++ + +FY R + C++A + Y + + V +C +D++ YY ATD + + C CTHVLVTN DN Y P FL T+ ADL
Sbjct: 59 EPAHVRVVIRTHAREQLQLRSLIYGLRAQSEG---QAG---FKADFVLVPTEPASLQTYQRLCNE---------MNVG-FDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADL 220 The following BLAST results are available for this feature:
BLAST of NO01G03060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03060 ID=NO01G03060|Name=NO01G03060|organism=Nannochloropsis oceanica|type=gene|length=1797bpback to top protein sequence of NO01G03060.1 >NO01G03060.1-protein ID=NO01G03060.1-protein|Name=NO01G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=438bpback to top Synonyms
Publications
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