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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:801414..803210 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03060.1 vs.
Match: EWM29236.1 (hypothetical protein Naga_100119g17 [Nannochloropsis gaditana]) HSP 1 Score: 569.3 bits (1466), Expect = 1.000e-158 Identity = 294/440 (66.82%), Postives = 334/440 (75.91%), Query Frame = 0
Query: 6 LQPAKAWVRRRATVMAYGALMLVAMVLVIRHDGWVGKEQARSRRGSLGARALASQKKVRYERLRDHSAPRSTLRDASTASTFGVAADPSQLPPHEVFPAPCDCRHCDVLPPPPPVPPSSSVFPFHAFPPPTTRDGRIASSPTASSTASSTSNPTHPPSPPPWLGVGLPPRDLQDTHVRIIIRVHHLQEAATRSLIWAMRAQPEAAKFQAGAPKFTVDFALVATEAQGLPVVQRIAQDEWERTR-------SRGINIA-PSPDVFVADTTGSFYALASNRSAPYRCSEADKAEYQNKGGENYVRLHCAYDNHAYYQATDVGVLDVLRGCPWCTHVLVTNSDNSYHPDFLLHTLSSDADLVTTDFVDHGERMVTADWRWGKVDLGGVLASRKVVMKTGGFIASLPPGAGPQETHDNDYWFVHRGLDLGATTAVVGKLLFFHN 438
LQPAKAW+RRR +MAY AL+LVA+ L+ RHDGW GK + R + ARALAS K+ YE R+H+ RS LR + A + VAAD SQLPPH V P PCDC+HC+V PP ++ PF P G P SST P P WLGVG PP + + HVR+IIRVHHLQEAAT SLIWAMRAQP+AA+ Q G+P+FTVDFALVATE QGLPVV RIA+ EW R R S ++++ P+PDVFVADTTGSFYALASNRSAPYRCS AD+AEY +KGG+ YVRLHC YDNHAYYQATDVG+LDVLRGC WCTHVLVTNSDNSYHPDFLLH LS ADLVTTDF+DHGER+V ADWRWG+VDLGGVLAS+ VVMKTGGFIASLPP AGPQETHDNDYWFVHRGL+LGATTA+V KL+FFHN
Sbjct: 13 LQPAKAWMRRRVGIMAYTALLLVAVALIARHDGWSGKRSSSRSRAASKARALASPKR-HYESSREHAPARSRLRSVTQA--YRVAADSSQLPPHRVLPLPCDCQHCEVRQSYSTSPPMPTL-PFPTGTAPARESGIFHHDPFPSSTREDML----APEPAAWLGVGRPPHRVGEYHVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGGFIASLPPDAGPQETHDNDYWFVHRGLELGATTALVHKLMFFHN 444
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03060.1 ID=NO01G03060.1|Name=NO01G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp AATTTACAGGAGTCTAGGACGCAAACGGAGCGCACCTGACAATCAACACG AGCAAAGAGTGGCAATATATATCTTATATTACGAGGAGAAAACCCCTCGG TGCAGCCATGTCCCCCCGAACGCTGCAGCCAGCCAAAGCTTGGGTGCGGC GGCGGGCAACGGTGATGGCGTACGGGGCCCTGATGCTTGTGGCGATGGTC TTAGTGATAAGACACGACGGCTGGGTGGGCAAGGAACAGGCTAGAAGCCG GAGAGGATCGCTTGGAGCGCGGGCATTGGCCTCCCAGAAGAAAGTGCGCT ATGAAAGGTTGCGGGATCATTCAGCACCACGGTCCACTTTGAGGGACGCC AGCACGGCCTCGACGTTTGGGGTGGCCGCGGACCCTTCTCAACTTCCCCC CCATGAAGTATTTCCCGCTCCCTGCGACTGTCGACATTGCGATGTCCTAC CTCCACCTCCACCAGTTCCCCCATCTTCGTCCGTCTTTCCCTTTCACGCC TTTCCCCCCCCTACGACCCGAGATGGCCGCATAGCTAGCAGTCCCACCGC CAGCAGCACCGCCAGCAGCACAAGCAACCCAACCCATCCTCCCAGCCCCC CACCCTGGCTGGGCGTAGGTCTCCCACCCCGTGATCTTCAAGACACGCAT GTGCGTATCATAATCCGCGTGCACCACTTACAAGAAGCCGCCACGCGTTC CCTTATATGGGCAATGCGTGCTCAGCCTGAGGCCGCAAAATTTCAAGCTG GCGCTCCGAAATTTACCGTCGACTTTGCCTTGGTAGCCACTGAAGCACAA GGCCTGCCCGTCGTGCAACGTATTGCGCAAGATGAATGGGAGCGCACAAG AAGCCGGGGCATTAATATCGCTCCTAGCCCTGATGTATTTGTCGCTGATA CCACCGGGTCTTTTTATGCCTTGGCCTCCAACCGCTCCGCGCCCTACCGG TGCAGCGAGGCGGACAAAGCTGAGTATCAAAACAAAGGAGGAGAAAACTA CGTGCGTTTGCATTGCGCCTACGACAACCATGCTTACTATCAAGCAACTG ACGTTGGGGTGTTGGACGTTTTGAGAGGCTGCCCCTGGTGTACCCACGTG TTGGTCACTAATTCAGATAACTCTTATCACCCAGATTTTTTGCTACACAC CCTGTCCTCAGACGCTGACCTTGTCACGACCGATTTTGTCGATCACGGCG AGAGAATGGTCACGGCCGATTGGCGATGGGGAAAAGTAGACTTAGGAGGG GTGCTTGCCTCGAGGAAGGTAGTGATGAAGACTGGTGGGTTCATCGCGTC CTTGCCACCGGGAGCGGGGCCACAGGAGACACATGATAATGATTATTGGT TTGTACATCGAGGATTGGATTTGGGGGCGACTACGGCAGTGGTAGGAAAA TTATTGTTTTTCCACAACTAGTGAGGACGGAAAAAAAAAGAAAAAGATCA AGAAAGTACCAATAATGTAGGGTAGGAAATTAAGACACAGAGACAAGAAA AGAGCAAGAGGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAAAGTCCGGC AACAGGAAGCCAGAAAAGTTCAATAATTTTTGAAGAGGCTGATGATGAAA GCAGAAAGCAAGCAAGGTGGGCAGATCGATCAATTTGAAAAATGTTTAAA TTGCACCTAGAGGTAGAAACGATGGCGGGAGCACCAAGAGGAGTAAGAGA AGAAAGCGGCATATACACTTGCATGTAATACTTGCGTGTCCCAGGATGTG TTTGTGTGATATGAGCGTCCCCCCAAAGAACAAAAAAACCTAGACGT back to topprotein sequence of NO01G03060.1 >NO01G03060.1-protein ID=NO01G03060.1-protein|Name=NO01G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp MSPRTLQPAKAWVRRRATVMAYGALMLVAMVLVIRHDGWVGKEQARSRRG SLGARALASQKKVRYERLRDHSAPRSTLRDASTASTFGVAADPSQLPPHE VFPAPCDCRHCDVLPPPPPVPPSSSVFPFHAFPPPTTRDGRIASSPTASS TASSTSNPTHPPSPPPWLGVGLPPRDLQDTHVRIIIRVHHLQEAATRSLI WAMRAQPEAAKFQAGAPKFTVDFALVATEAQGLPVVQRIAQDEWERTRSR GINIAPSPDVFVADTTGSFYALASNRSAPYRCSEADKAEYQNKGGENYVR LHCAYDNHAYYQATDVGVLDVLRGCPWCTHVLVTNSDNSYHPDFLLHTLS SDADLVTTDFVDHGERMVTADWRWGKVDLGGVLASRKVVMKTGGFIASLP PGAGPQETHDNDYWFVHRGLDLGATTAVVGKLLFFHN* back to topmRNA from alignment at chr1:801414..803210+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03060.1 ID=NO01G03060.1|Name=NO01G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at chr1:801414..803210+ (Nannochloropsis oceanica) AATTTACAGGAGTCTAGGACGCAAACGGAGCGCACCTGACAATCAACACG
AGCAAAGAGTGGCAATATATATCTTATATTACGAGGAGAAAACCCCTCGG
TGCAGCCATGTCCCCCCGAACGCTGCAGCCAGCCAAAGCTTGGGTGCGGC
GGCGGGCAACGGTGATGGCGTACGGGGCCCTGATGCTTGTGGCGATGGTC
TTAGTGATAAGACACGACGGCTGGGTGGGCAAGGAACAGGCTAGAAGCCG
GAGAGGATCGCTTGGAGCGCGGGCATTGGCCTCCCAGAAGAAAGTGCGCT
ATGAAAGGTTGCGGGATCATTCAGCACCACGGTCCACTTTGAGGGACGCC
AGCACGGCCTCGACGTTTGGGGTGGCCGCGGACCCTTCTCAACTTCCCCC
CCATGAAGTATTTCCCGCTCCCTGCGACTGTCGACATTGCGATGTCCTAC
CTCCACCTCCACCAGTTCCCCCATCTTCGTCCGTCTTTCCCTTTCACGCC
TTTCCCCCCCCTACGACCCGAGATGGCCGCATAGCTAGCAGTCCCACCGC
CAGCAGCACCGCCAGCAGCACAAGCAACCCAACCCATCCTCCCAGCCCCC
CACCCTGGCTGGGCGTAGGTCTCCCACCCCGTGATCTTCAAGACACGCAT
GTGCGTATCATAATCCGCGTGCACCACTTACAAGAAGCCGCCACGCGTTC
CCTTATATGGGCAATGCGTGCTCAGCCTGAGGCCGCAAAATTTCAAGCTG
GCGCTCCGAAATTTACCGTCGACTTTGCCTTGGTAGCCACTGAAGCACAA
GGCCTGCCCGTCGTGCAACGTATTGCGCAAGATGAATGGGAGCGCACAAG
AAGCCGGGGCATTAATATCGCTCCTAGCCCTGATGTATTTGTCGCTGATA
CCACCGGGTCTTTTTATGCCTTGGCCTCCAACCGCTCCGCGCCCTACCGG
TGCAGCGAGGCGGACAAAGCTGAGTATCAAAACAAAGGAGGAGAAAACTA
CGTGCGTTTGCATTGCGCCTACGACAACCATGCTTACTATCAAGCAACTG
ACGTTGGGGTGTTGGACGTTTTGAGAGGCTGCCCCTGGTGTACCCACGTG
TTGGTCACTAATTCAGATAACTCTTATCACCCAGATTTTTTGCTACACAC
CCTGTCCTCAGACGCTGACCTTGTCACGACCGATTTTGTCGATCACGGCG
AGAGAATGGTCACGGCCGATTGGCGATGGGGAAAAGTAGACTTAGGAGGG
GTGCTTGCCTCGAGGAAGGTAGTGATGAAGACTGGTGGGTTCATCGCGTC
CTTGCCACCGGGAGCGGGGCCACAGGAGACACATGATAATGATTATTGGT
TTGTACATCGAGGATTGGATTTGGGGGCGACTACGGCAGTGGTAGGAAAA
TTATTGTTTTTCCACAACTAGTGAGGACGGAAAAAAAAAGAAAAAGATCA
AGAAAGTACCAATAATGTAGGGTAGGAAATTAAGACACAGAGACAAGAAA
AGAGCAAGAGGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAAAGTCCGGC
AACAGGAAGCCAGAAAAGTTCAATAATTTTTGAAGAGGCTGATGATGAAA
GCAGAAAGCAAGCAAGGTGGGCAGATCGATCAATTTGAAAAATGTTTAAA
TTGCACCTAGAGGTAGAAACGATGGCGGGAGCACCAAGAGGAGTAAGAGA
AGAAAGCGGCATATACACTTGCATGTAATACTTGCGTGTCCCAGGATGTG
TTTGTGTGATATGAGCGTCCCCCCAAAGAACAAAAAAACCTAGACGT back to topCoding sequence (CDS) from alignment at chr1:801414..803210+ >NO01G03060.1 ID=NO01G03060.1|Name=NO01G03060.1|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at chr1:801414..803210+ (Nannochloropsis oceanica) ATGTCCCCCCGAACGCTGCAGCCAGCCAAAGCTTGGGTGCGGCGGCGGGC AACGGTGATGGCGTACGGGGCCCTGATGCTTGTGGCGATGGTCTTAGTGA TAAGACACGACGGCTGGGTGGGCAAGGAACAGGCTAGAAGCCGGAGAGGA TCGCTTGGAGCGCGGGCATTGGCCTCCCAGAAGAAAGTGCGCTATGAAAG GTTGCGGGATCATTCAGCACCACGGTCCACTTTGAGGGACGCCAGCACGG CCTCGACGTTTGGGGTGGCCGCGGACCCTTCTCAACTTCCCCCCCATGAA GTATTTCCCGCTCCCTGCGACTGTCGACATTGCGATGTCCTACCTCCACC TCCACCAGTTCCCCCATCTTCGTCCGTCTTTCCCTTTCACGCCTTTCCCC CCCCTACGACCCGAGATGGCCGCATAGCTAGCAGTCCCACCGCCAGCAGC ACCGCCAGCAGCACAAGCAACCCAACCCATCCTCCCAGCCCCCCACCCTG GCTGGGCGTAGGTCTCCCACCCCGTGATCTTCAAGACACGCATGTGCGTA TCATAATCCGCGTGCACCACTTACAAGAAGCCGCCACGCGTTCCCTTATA TGGGCAATGCGTGCTCAGCCTGAGGCCGCAAAATTTCAAGCTGGCGCTCC GAAATTTACCGTCGACTTTGCCTTGGTAGCCACTGAAGCACAAGGCCTGC CCGTCGTGCAACGTATTGCGCAAGATGAATGGGAGCGCACAAGAAGCCGG GGCATTAATATCGCTCCTAGCCCTGATGTATTTGTCGCTGATACCACCGG GTCTTTTTATGCCTTGGCCTCCAACCGCTCCGCGCCCTACCGGTGCAGCG AGGCGGACAAAGCTGAGTATCAAAACAAAGGAGGAGAAAACTACGTGCGT TTGCATTGCGCCTACGACAACCATGCTTACTATCAAGCAACTGACGTTGG GGTGTTGGACGTTTTGAGAGGCTGCCCCTGGTGTACCCACGTGTTGGTCA CTAATTCAGATAACTCTTATCACCCAGATTTTTTGCTACACACCCTGTCC TCAGACGCTGACCTTGTCACGACCGATTTTGTCGATCACGGCGAGAGAAT GGTCACGGCCGATTGGCGATGGGGAAAAGTAGACTTAGGAGGGGTGCTTG CCTCGAGGAAGGTAGTGATGAAGACTGGTGGGTTCATCGCGTCCTTGCCA CCGGGAGCGGGGCCACAGGAGACACATGATAATGATTATTGGTTTGTACA TCGAGGATTGGATTTGGGGGCGACTACGGCAGTGGTAGGAAAATTATTGT TTTTCCACAACTAG back to top
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