NO01G03060.1, NO01G03060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03060.1
Unique NameNO01G03060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1797
Alignment locationchr1:801414..803210 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:801414..803210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03060.1 vs.
Match: EWM29236.1 (hypothetical protein Naga_100119g17 [Nannochloropsis gaditana])

HSP 1 Score: 569.3 bits (1466), Expect = 1.000e-158
Identity = 294/440 (66.82%), Postives = 334/440 (75.91%), Query Frame = 0
Query:    6 LQPAKAWVRRRATVMAYGALMLVAMVLVIRHDGWVGKEQARSRRGSLGARALASQKKVRYERLRDHSAPRSTLRDASTASTFGVAADPSQLPPHEVFPAPCDCRHCDVLPPPPPVPPSSSVFPFHAFPPPTTRDGRIASSPTASSTASSTSNPTHPPSPPPWLGVGLPPRDLQDTHVRIIIRVHHLQEAATRSLIWAMRAQPEAAKFQAGAPKFTVDFALVATEAQGLPVVQRIAQDEWERTR-------SRGINIA-PSPDVFVADTTGSFYALASNRSAPYRCSEADKAEYQNKGGENYVRLHCAYDNHAYYQATDVGVLDVLRGCPWCTHVLVTNSDNSYHPDFLLHTLSSDADLVTTDFVDHGERMVTADWRWGKVDLGGVLASRKVVMKTGGFIASLPPGAGPQETHDNDYWFVHRGLDLGATTAVVGKLLFFHN 438
            LQPAKAW+RRR  +MAY AL+LVA+ L+ RHDGW GK  +   R +  ARALAS K+  YE  R+H+  RS LR  + A  + VAAD SQLPPH V P PCDC+HC+V       PP  ++ PF     P    G     P  SST          P P  WLGVG PP  + + HVR+IIRVHHLQEAAT SLIWAMRAQP+AA+ Q G+P+FTVDFALVATE QGLPVV RIA+ EW R R       S  ++++ P+PDVFVADTTGSFYALASNRSAPYRCS AD+AEY +KGG+ YVRLHC YDNHAYYQATDVG+LDVLRGC WCTHVLVTNSDNSYHPDFLLH LS  ADLVTTDF+DHGER+V ADWRWG+VDLGGVLAS+ VVMKTGGFIASLPP AGPQETHDNDYWFVHRGL+LGATTA+V KL+FFHN
Sbjct:   13 LQPAKAWMRRRVGIMAYTALLLVAVALIARHDGWSGKRSSSRSRAASKARALASPKR-HYESSREHAPARSRLRSVTQA--YRVAADSSQLPPHRVLPLPCDCQHCEVRQSYSTSPPMPTL-PFPTGTAPARESGIFHHDPFPSSTREDML----APEPAAWLGVGRPPHRVGEYHVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGGFIASLPPDAGPQETHDNDYWFVHRGLELGATTALVHKLMFFHN 444          
The following BLAST results are available for this feature:
BLAST of NO01G03060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29236.11.000e-15866.82hypothetical protein Naga_100119g17 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03060NO01G03060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03060.1NO01G03060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03060.1.cds1NO01G03060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03060.1 ID=NO01G03060.1|Name=NO01G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp
AATTTACAGGAGTCTAGGACGCAAACGGAGCGCACCTGACAATCAACACG
AGCAAAGAGTGGCAATATATATCTTATATTACGAGGAGAAAACCCCTCGG
TGCAGCCATGTCCCCCCGAACGCTGCAGCCAGCCAAAGCTTGGGTGCGGC
GGCGGGCAACGGTGATGGCGTACGGGGCCCTGATGCTTGTGGCGATGGTC
TTAGTGATAAGACACGACGGCTGGGTGGGCAAGGAACAGGCTAGAAGCCG
GAGAGGATCGCTTGGAGCGCGGGCATTGGCCTCCCAGAAGAAAGTGCGCT
ATGAAAGGTTGCGGGATCATTCAGCACCACGGTCCACTTTGAGGGACGCC
AGCACGGCCTCGACGTTTGGGGTGGCCGCGGACCCTTCTCAACTTCCCCC
CCATGAAGTATTTCCCGCTCCCTGCGACTGTCGACATTGCGATGTCCTAC
CTCCACCTCCACCAGTTCCCCCATCTTCGTCCGTCTTTCCCTTTCACGCC
TTTCCCCCCCCTACGACCCGAGATGGCCGCATAGCTAGCAGTCCCACCGC
CAGCAGCACCGCCAGCAGCACAAGCAACCCAACCCATCCTCCCAGCCCCC
CACCCTGGCTGGGCGTAGGTCTCCCACCCCGTGATCTTCAAGACACGCAT
GTGCGTATCATAATCCGCGTGCACCACTTACAAGAAGCCGCCACGCGTTC
CCTTATATGGGCAATGCGTGCTCAGCCTGAGGCCGCAAAATTTCAAGCTG
GCGCTCCGAAATTTACCGTCGACTTTGCCTTGGTAGCCACTGAAGCACAA
GGCCTGCCCGTCGTGCAACGTATTGCGCAAGATGAATGGGAGCGCACAAG
AAGCCGGGGCATTAATATCGCTCCTAGCCCTGATGTATTTGTCGCTGATA
CCACCGGGTCTTTTTATGCCTTGGCCTCCAACCGCTCCGCGCCCTACCGG
TGCAGCGAGGCGGACAAAGCTGAGTATCAAAACAAAGGAGGAGAAAACTA
CGTGCGTTTGCATTGCGCCTACGACAACCATGCTTACTATCAAGCAACTG
ACGTTGGGGTGTTGGACGTTTTGAGAGGCTGCCCCTGGTGTACCCACGTG
TTGGTCACTAATTCAGATAACTCTTATCACCCAGATTTTTTGCTACACAC
CCTGTCCTCAGACGCTGACCTTGTCACGACCGATTTTGTCGATCACGGCG
AGAGAATGGTCACGGCCGATTGGCGATGGGGAAAAGTAGACTTAGGAGGG
GTGCTTGCCTCGAGGAAGGTAGTGATGAAGACTGGTGGGTTCATCGCGTC
CTTGCCACCGGGAGCGGGGCCACAGGAGACACATGATAATGATTATTGGT
TTGTACATCGAGGATTGGATTTGGGGGCGACTACGGCAGTGGTAGGAAAA
TTATTGTTTTTCCACAACTAGTGAGGACGGAAAAAAAAAGAAAAAGATCA
AGAAAGTACCAATAATGTAGGGTAGGAAATTAAGACACAGAGACAAGAAA
AGAGCAAGAGGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAAAGTCCGGC
AACAGGAAGCCAGAAAAGTTCAATAATTTTTGAAGAGGCTGATGATGAAA
GCAGAAAGCAAGCAAGGTGGGCAGATCGATCAATTTGAAAAATGTTTAAA
TTGCACCTAGAGGTAGAAACGATGGCGGGAGCACCAAGAGGAGTAAGAGA
AGAAAGCGGCATATACACTTGCATGTAATACTTGCGTGTCCCAGGATGTG
TTTGTGTGATATGAGCGTCCCCCCAAAGAACAAAAAAACCTAGACGT
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protein sequence of NO01G03060.1

>NO01G03060.1-protein ID=NO01G03060.1-protein|Name=NO01G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MSPRTLQPAKAWVRRRATVMAYGALMLVAMVLVIRHDGWVGKEQARSRRG
SLGARALASQKKVRYERLRDHSAPRSTLRDASTASTFGVAADPSQLPPHE
VFPAPCDCRHCDVLPPPPPVPPSSSVFPFHAFPPPTTRDGRIASSPTASS
TASSTSNPTHPPSPPPWLGVGLPPRDLQDTHVRIIIRVHHLQEAATRSLI
WAMRAQPEAAKFQAGAPKFTVDFALVATEAQGLPVVQRIAQDEWERTRSR
GINIAPSPDVFVADTTGSFYALASNRSAPYRCSEADKAEYQNKGGENYVR
LHCAYDNHAYYQATDVGVLDVLRGCPWCTHVLVTNSDNSYHPDFLLHTLS
SDADLVTTDFVDHGERMVTADWRWGKVDLGGVLASRKVVMKTGGFIASLP
PGAGPQETHDNDYWFVHRGLDLGATTAVVGKLLFFHN*
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mRNA from alignment at chr1:801414..803210+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03060.1 ID=NO01G03060.1|Name=NO01G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at chr1:801414..803210+ (Nannochloropsis oceanica)
AATTTACAGGAGTCTAGGACGCAAACGGAGCGCACCTGACAATCAACACG AGCAAAGAGTGGCAATATATATCTTATATTACGAGGAGAAAACCCCTCGG TGCAGCCATGTCCCCCCGAACGCTGCAGCCAGCCAAAGCTTGGGTGCGGC GGCGGGCAACGGTGATGGCGTACGGGGCCCTGATGCTTGTGGCGATGGTC TTAGTGATAAGACACGACGGCTGGGTGGGCAAGGAACAGGCTAGAAGCCG GAGAGGATCGCTTGGAGCGCGGGCATTGGCCTCCCAGAAGAAAGTGCGCT ATGAAAGGTTGCGGGATCATTCAGCACCACGGTCCACTTTGAGGGACGCC AGCACGGCCTCGACGTTTGGGGTGGCCGCGGACCCTTCTCAACTTCCCCC CCATGAAGTATTTCCCGCTCCCTGCGACTGTCGACATTGCGATGTCCTAC CTCCACCTCCACCAGTTCCCCCATCTTCGTCCGTCTTTCCCTTTCACGCC TTTCCCCCCCCTACGACCCGAGATGGCCGCATAGCTAGCAGTCCCACCGC CAGCAGCACCGCCAGCAGCACAAGCAACCCAACCCATCCTCCCAGCCCCC CACCCTGGCTGGGCGTAGGTCTCCCACCCCGTGATCTTCAAGACACGCAT GTGCGTATCATAATCCGCGTGCACCACTTACAAGAAGCCGCCACGCGTTC CCTTATATGGGCAATGCGTGCTCAGCCTGAGGCCGCAAAATTTCAAGCTG GCGCTCCGAAATTTACCGTCGACTTTGCCTTGGTAGCCACTGAAGCACAA GGCCTGCCCGTCGTGCAACGTATTGCGCAAGATGAATGGGAGCGCACAAG AAGCCGGGGCATTAATATCGCTCCTAGCCCTGATGTATTTGTCGCTGATA CCACCGGGTCTTTTTATGCCTTGGCCTCCAACCGCTCCGCGCCCTACCGG TGCAGCGAGGCGGACAAAGCTGAGTATCAAAACAAAGGAGGAGAAAACTA CGTGCGTTTGCATTGCGCCTACGACAACCATGCTTACTATCAAGCAACTG ACGTTGGGGTGTTGGACGTTTTGAGAGGCTGCCCCTGGTGTACCCACGTG TTGGTCACTAATTCAGATAACTCTTATCACCCAGATTTTTTGCTACACAC CCTGTCCTCAGACGCTGACCTTGTCACGACCGATTTTGTCGATCACGGCG AGAGAATGGTCACGGCCGATTGGCGATGGGGAAAAGTAGACTTAGGAGGG GTGCTTGCCTCGAGGAAGGTAGTGATGAAGACTGGTGGGTTCATCGCGTC CTTGCCACCGGGAGCGGGGCCACAGGAGACACATGATAATGATTATTGGT TTGTACATCGAGGATTGGATTTGGGGGCGACTACGGCAGTGGTAGGAAAA TTATTGTTTTTCCACAACTAGTGAGGACGGAAAAAAAAAGAAAAAGATCA AGAAAGTACCAATAATGTAGGGTAGGAAATTAAGACACAGAGACAAGAAA AGAGCAAGAGGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAAAGTCCGGC AACAGGAAGCCAGAAAAGTTCAATAATTTTTGAAGAGGCTGATGATGAAA GCAGAAAGCAAGCAAGGTGGGCAGATCGATCAATTTGAAAAATGTTTAAA TTGCACCTAGAGGTAGAAACGATGGCGGGAGCACCAAGAGGAGTAAGAGA AGAAAGCGGCATATACACTTGCATGTAATACTTGCGTGTCCCAGGATGTG TTTGTGTGATATGAGCGTCCCCCCAAAGAACAAAAAAACCTAGACGT
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Coding sequence (CDS) from alignment at chr1:801414..803210+

>NO01G03060.1 ID=NO01G03060.1|Name=NO01G03060.1|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at chr1:801414..803210+ (Nannochloropsis oceanica)
ATGTCCCCCCGAACGCTGCAGCCAGCCAAAGCTTGGGTGCGGCGGCGGGC
AACGGTGATGGCGTACGGGGCCCTGATGCTTGTGGCGATGGTCTTAGTGA
TAAGACACGACGGCTGGGTGGGCAAGGAACAGGCTAGAAGCCGGAGAGGA
TCGCTTGGAGCGCGGGCATTGGCCTCCCAGAAGAAAGTGCGCTATGAAAG
GTTGCGGGATCATTCAGCACCACGGTCCACTTTGAGGGACGCCAGCACGG
CCTCGACGTTTGGGGTGGCCGCGGACCCTTCTCAACTTCCCCCCCATGAA
GTATTTCCCGCTCCCTGCGACTGTCGACATTGCGATGTCCTACCTCCACC
TCCACCAGTTCCCCCATCTTCGTCCGTCTTTCCCTTTCACGCCTTTCCCC
CCCCTACGACCCGAGATGGCCGCATAGCTAGCAGTCCCACCGCCAGCAGC
ACCGCCAGCAGCACAAGCAACCCAACCCATCCTCCCAGCCCCCCACCCTG
GCTGGGCGTAGGTCTCCCACCCCGTGATCTTCAAGACACGCATGTGCGTA
TCATAATCCGCGTGCACCACTTACAAGAAGCCGCCACGCGTTCCCTTATA
TGGGCAATGCGTGCTCAGCCTGAGGCCGCAAAATTTCAAGCTGGCGCTCC
GAAATTTACCGTCGACTTTGCCTTGGTAGCCACTGAAGCACAAGGCCTGC
CCGTCGTGCAACGTATTGCGCAAGATGAATGGGAGCGCACAAGAAGCCGG
GGCATTAATATCGCTCCTAGCCCTGATGTATTTGTCGCTGATACCACCGG
GTCTTTTTATGCCTTGGCCTCCAACCGCTCCGCGCCCTACCGGTGCAGCG
AGGCGGACAAAGCTGAGTATCAAAACAAAGGAGGAGAAAACTACGTGCGT
TTGCATTGCGCCTACGACAACCATGCTTACTATCAAGCAACTGACGTTGG
GGTGTTGGACGTTTTGAGAGGCTGCCCCTGGTGTACCCACGTGTTGGTCA
CTAATTCAGATAACTCTTATCACCCAGATTTTTTGCTACACACCCTGTCC
TCAGACGCTGACCTTGTCACGACCGATTTTGTCGATCACGGCGAGAGAAT
GGTCACGGCCGATTGGCGATGGGGAAAAGTAGACTTAGGAGGGGTGCTTG
CCTCGAGGAAGGTAGTGATGAAGACTGGTGGGTTCATCGCGTCCTTGCCA
CCGGGAGCGGGGCCACAGGAGACACATGATAATGATTATTGGTTTGTACA
TCGAGGATTGGATTTGGGGGCGACTACGGCAGTGGTAGGAAAATTATTGT
TTTTCCACAACTAG
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Synonyms
Publications