NO01G03030, NO01G03030 (gene) Nannochloropsis oceanica

Overview
NameNO01G03030
Unique NameNO01G03030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2758
Alignment locationchr1:793641..796398 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:793641..796398 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO01G03030 vs. NCBI_GenBank
Match: EWM29225.1 (hypothetical protein Naga_100203g11 [Nannochloropsis gaditana])

HSP 1 Score: 155.2 bits (391), Expect = 3.100e-34
Identity = 93/174 (53.45%), Postives = 110/174 (63.22%), Query Frame = 0 
Query:   61 MVSNTLGEIRKRGDLCDSKGAMLKVDIETETVEVEKLLDTKKRKLAEISELKDRVDAIRKKVLVQVSSNCLKEIKALRPLPPTSHQXXXXXXXXXXXXXXXXXXXXXXXXXXTQVPPLQERARVCVEELGMRSEQLAARIESLRTTITAVSNFLKGAPSKVEKAIRQSHRKGVE 235
            MV+NTLGEIRKR DLCDSKGAMLKVDIE E  EV+KLL +KKRKLAEI+ELK RV  +R+KVL   SS C    KALRP    + +                           ++ PLQE+AR CVEEL   SE LA R+ESL  T TAV++ LK  PS+V+KAIRQ  R G+E
Sbjct:    1 MVTNTLGEIRKRADLCDSKGAMLKVDIENEATEVDKLLQSKKRKLAEIAELKSRVSVMRRKVLDLTSSRCASWCKALRPAEAAAAE-----AGAERRAAAQAVESLRGRDVLAEISPLQEKARQCVEELAGGSELLARRVESLGQTSTAVTSLLKSKPSRVDKAIRQGPRDGLE 169
The following BLAST results are available for this feature:
BLAST of NO01G03030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29225.13.100e-3453.45hypothetical protein Naga_100203g11 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008022NSK008022Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03030.1NO01G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576869gene_304Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100203g11gene1394Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03030.1NO01G03030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03030 ID=NO01G03030|Name=NO01G03030|organism=Nannochloropsis oceanica|type=gene|length=2758bp
TGGGACATGGCTGTGCTGTGTGCTTGCAGGTGTGGGACCGGGTCAGATTG
TCGTCTGTTGAGTGTTGATTCTTCTTGTGTGGACTGTTGCTTGCTCGCCG
TGATTTTGTGTATGGACTCGTACTTTGGCGGGAGCAGGAAAGTAAAATGT
TGCTCATGCGACAAAGCTATCGAAGTGACATGCTGCGAGACCATACGGGA
TGATTGGGGAGACGCAGGCCTCGTGTCATGATCCCGAAACGAGGGGGATG
AGCAACGGGCAAGGAATCAAATTTGGCGACTCGTGAGGCGTCCGCTTGCT
TCTTCTGCGCACTCCCAGGCAGGTCAAAAACTTTCCCCAAACTTGAAACA
CACAGATGTCTTGGGACTTTGGCTTTGGGTTGTTCATTCCCGTGGTTGCC
ACAGCAAGCGGTCGTTGACGCTATCCCGTGATAGCACGCGTCCAAGTAAG
CACTTTTGTCTTCTTCACGCTCAGACAGACCCATACTCGAACTTCCCACA
GGAAACCAACCCCACCACGACACGGACCCGAGCATGCTCAAAGTCAAGCT
ACGCCACCTCAATGTGGTGGAAGGGGAGCTGAATGCCGCGTCGGAGGATG
CCTTGCGGgtaagtggagggcttcttcgctattgtcctcgttaatttctg
cacgctgtgctatcaaacactcatctcttcttcgccctatatgcctcgaa
gGTCGCCATCCCTATCCGCGCCGATTGCCCTGAAGGAGATCGGGCAGTGC
TTCAGCCAGCCCTTGCCAAGGGAGGACAGAACACGGAGCAGCGGTGGCTT
Ggtaagtggtgctgaaatcatatactcccacatgaggtcaccccttatgc
cctgcacttgttcctgcgttcttccagctatctcattcgatcatctcttg
tttcctttcccctatttgtttgcaggtctatcggcatgcgtattgtgttg
ctctctccttcagctctggttttccgcctctgcacctcttctcatttaat
cctttccttccctatcatcccatctcaacgaatgacagGTCGGATGGTGA
GCAACACCCTCGGCGAGATTCGAAAGCGAGGGGATTTATGTGACAGCAAG
GGGGCCATGCTTAAGGTGGACATCGAAACCGAGACCGTCGAGGgtacgag
ggaggaaaataagagtgagaaggaacagtaggagaggaagtagaaagaat
gggaggaatggttgcacactcattctcactcgttttgcgtatctgagaag
aaggaaatggttgagaagcagcaacagtaaagagacgtcatttaaatgaa
attaatattcgtatccaagaagaaggaaatggttgagaagcagcagcagt
aaatggacgtcatttgaatgaaattaatattcgtatccactcattccccc
ttatccgacccctcccccaccctacccataccaaaaccagTGGAAAAACT
TCTGGACACCAAAAAACGTAAGCTCGCTGAGATTTCCGAGCTTAAAGATC
GTGTCGATGCAATTCGGAAGAAGGTGCTGGTCCAAGTATCGTCCAACTGC
CTCAAGGAAATAAAGGCCCTCCGACCCCTCCCTCCCACCTCCCACCAGGA
CCAACAAGGAAAAGCTGTCGCCGCTGAGCAACAGCAACAACAAGCAGCTG
CGGCCATGCAGGAAAGCGCGATCTTGACTCAGGTCCCTCCGTTGCAGGAG
CGAGCAAGGGTGTGTGTGGAAGAGTTGGGGATGAGGTCAGAGCAGCTGGC
GGCGAGGATCGAGAGCCTCCGGACCACCATTACGGCGGTGTCTAATTTTT
TGAAGGGCGCGCCAAGTAAAGTGGAGAAGGCGATTCGACAGAGTCACCGG
AAAGGGGTGGAAGGAGAAGGACGAGGGGTTGAAGAGGTCGAGAGGGAAGA
GCAAGGGTCGGCGGAGCGGAGGACGAGGAGGAAGAAGGGCAGTCCGTCTC
CTGCTACTTCCCCTGCCGCTGCTGCGTCCGTGGCCCCATCGAGTGCGATT
TCGATGCTCGCGGCCCATTTGGGTCAAAGTTGAAGTAGGGAAGACAGGGG
AGAACGGTAATTGTAATTTCGGTGATTGTTTTTTTAATCAGGTTGACTTT
TGTCGTGTGTCCGTTATCTCCGCATGTATAAAAATGTAATCTGATTATGA
CGACCTCCTCGTCCTTGATCCCGCCAATGGCAGATGAAGGGGGCAGAGGG
GGCAGGAGTGTGAAGAAGAGAGAGAGGAAGAAAGAATGAGAAAGCGGAGG
AGGCAGGAAGAATGTGGGTGGGAGAGAGGGAAGAGGGAGGGGATCAAGGT
TGAGAACGTGGGTGGAAGCGGGGGGGGGGGGGGAGGGGGCAGGCGCGTGC
GGCCGGTCAAGCGTATAGGAAAGTAACGAAAGCAAGGACATATTTATGTA
TCAGTGCGGGAACGACGAAGGTCAATTAAGATTACATGAAAGCATTCCTA
ATTCACGAGAGAGGAAAATAAGGAGACGAACAAGGTGACAGATAAATGTA
TGCATGATGAAGCATTTACCATGAAGCATTGCTGTTCCCTTTTCTACTTT
CTTCCTTCCGTCCCTGGCCACTGCGACCCCGCAAAAACGCCGAACACTTA
CTTCATACATCCTACCGACGCTTTCTCCTTTCTTGTGTCAATAGACCTCA
TATGTATCCATCCGCTTCTGATTCTGCTACTGCTGCTGCTGCACAATCCT
CAACACATGTGCTACAATCGACCCCTTACCTCACCCTCGATGTATCTTCC
TCCCTCCC
back to top

protein sequence of NO01G03030.1

>NO01G03030.1-protein ID=NO01G03030.1-protein|Name=NO01G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MLKVKLRHLNVVEGELNAASEDALRVAIPIRADCPEGDRAVLQPALAKGG
QNTEQRWLGRMVSNTLGEIRKRGDLCDSKGAMLKVDIETETVEVEKLLDT
KKRKLAEISELKDRVDAIRKKVLVQVSSNCLKEIKALRPLPPTSHQDQQG
KAVAAEQQQQQAAAAMQESAILTQVPPLQERARVCVEELGMRSEQLAARI
ESLRTTITAVSNFLKGAPSKVEKAIRQSHRKGVEGEGRGVEEVEREEQGS
AERRTRRKKGSPSPATSPAAAASVAPSSAISMLAAHLGQS*
back to top
Synonyms
Publications