NO01G03030.1, NO01G03030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03030.1
Unique NameNO01G03030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2131
Alignment locationchr1:793641..796398 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:793641..796398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03030.1 vs.
Match: EWM29225.1 (hypothetical protein Naga_100203g11 [Nannochloropsis gaditana])

HSP 1 Score: 158.7 bits (400), Expect = 2.800e-35
Identity = 112/229 (48.91%), Postives = 142/229 (62.01%), Query Frame = 0
Query:   61 MVSNTLGEIRKRGDLCDSKGAMLKVDIETETVEVEKLLDTKKRKLAEISELKDRVDAIRKKVLVQVSSNCLKEIKALRPLPPTSHQDQQGKAVAAEQQQQQAAAAMQESAILTQVPPLQERARVCVEELGMRSEQLAARIESLRTTITAVSNFLKGAPSKVEKAIRQSHRKGVEGEGRGVEEVEREEQGSAERRTRRKKGSPSPATSPAAAASVAPS--SAISMLAAHL 288
            MV+NTLGEIRKR DLCDSKGAMLKVDIE E  EV+KLL +KKRKLAEI+ELK RV  +R+KVL   SS C    KALRP    +      +A A  +   QA  +++   +L ++ PLQE+AR CVEEL   SE LA R+ESL  T TAV++ LK  PS+V+KAIRQ  R G+E         +R   G  E     ++     A +PA   +  P+  S IS+L+AHL
Sbjct:    1 MVTNTLGEIRKRADLCDSKGAMLKVDIENEATEVDKLLQSKKRKLAEIAELKSRVSVMRRKVLDLTSSRCASWCKALRPAEAAA-----AEAGAERRAAAQAVESLRGRDVLAEISPLQEKARQCVEELAGGSELLARRVESLGQTSTAVTSLLKSKPSRVDKAIRQGPRDGLESR---KSARKRPGAGGYENNPANRE-----ARAPADEETATPALMSGISLLSAHL 216          
The following BLAST results are available for this feature:
BLAST of NO01G03030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29225.12.800e-3548.91hypothetical protein Naga_100203g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03030NO01G03030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03030.1NO01G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03030.1.cds1NO01G03030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03030.1.cds2NO01G03030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03030.1.cds3NO01G03030.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03030.1.cds4NO01G03030.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03030.1 ID=NO01G03030.1|Name=NO01G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2131bp
TGGGACATGGCTGTGCTGTGTGCTTGCAGGTGTGGGACCGGGTCAGATTG
TCGTCTGTTGAGTGTTGATTCTTCTTGTGTGGACTGTTGCTTGCTCGCCG
TGATTTTGTGTATGGACTCGTACTTTGGCGGGAGCAGGAAAGTAAAATGT
TGCTCATGCGACAAAGCTATCGAAGTGACATGCTGCGAGACCATACGGGA
TGATTGGGGAGACGCAGGCCTCGTGTCATGATCCCGAAACGAGGGGGATG
AGCAACGGGCAAGGAATCAAATTTGGCGACTCGTGAGGCGTCCGCTTGCT
TCTTCTGCGCACTCCCAGGCAGGTCAAAAACTTTCCCCAAACTTGAAACA
CACAGATGTCTTGGGACTTTGGCTTTGGGTTGTTCATTCCCGTGGTTGCC
ACAGCAAGCGGTCGTTGACGCTATCCCGTGATAGCACGCGTCCAAGTAAG
CACTTTTGTCTTCTTCACGCTCAGACAGACCCATACTCGAACTTCCCACA
GGAAACCAACCCCACCACGACACGGACCCGAGCATGCTCAAAGTCAAGCT
ACGCCACCTCAATGTGGTGGAAGGGGAGCTGAATGCCGCGTCGGAGGATG
CCTTGCGGGTCGCCATCCCTATCCGCGCCGATTGCCCTGAAGGAGATCGG
GCAGTGCTTCAGCCAGCCCTTGCCAAGGGAGGACAGAACACGGAGCAGCG
GTGGCTTGGTCGGATGGTGAGCAACACCCTCGGCGAGATTCGAAAGCGAG
GGGATTTATGTGACAGCAAGGGGGCCATGCTTAAGGTGGACATCGAAACC
GAGACCGTCGAGGTGGAAAAACTTCTGGACACCAAAAAACGTAAGCTCGC
TGAGATTTCCGAGCTTAAAGATCGTGTCGATGCAATTCGGAAGAAGGTGC
TGGTCCAAGTATCGTCCAACTGCCTCAAGGAAATAAAGGCCCTCCGACCC
CTCCCTCCCACCTCCCACCAGGACCAACAAGGAAAAGCTGTCGCCGCTGA
GCAACAGCAACAACAAGCAGCTGCGGCCATGCAGGAAAGCGCGATCTTGA
CTCAGGTCCCTCCGTTGCAGGAGCGAGCAAGGGTGTGTGTGGAAGAGTTG
GGGATGAGGTCAGAGCAGCTGGCGGCGAGGATCGAGAGCCTCCGGACCAC
CATTACGGCGGTGTCTAATTTTTTGAAGGGCGCGCCAAGTAAAGTGGAGA
AGGCGATTCGACAGAGTCACCGGAAAGGGGTGGAAGGAGAAGGACGAGGG
GTTGAAGAGGTCGAGAGGGAAGAGCAAGGGTCGGCGGAGCGGAGGACGAG
GAGGAAGAAGGGCAGTCCGTCTCCTGCTACTTCCCCTGCCGCTGCTGCGT
CCGTGGCCCCATCGAGTGCGATTTCGATGCTCGCGGCCCATTTGGGTCAA
AGTTGAAGTAGGGAAGACAGGGGAGAACGGTAATTGTAATTTCGGTGATT
GTTTTTTTAATCAGGTTGACTTTTGTCGTGTGTCCGTTATCTCCGCATGT
ATAAAAATGTAATCTGATTATGACGACCTCCTCGTCCTTGATCCCGCCAA
TGGCAGATGAAGGGGGCAGAGGGGGCAGGAGTGTGAAGAAGAGAGAGAGG
AAGAAAGAATGAGAAAGCGGAGGAGGCAGGAAGAATGTGGGTGGGAGAGA
GGGAAGAGGGAGGGGATCAAGGTTGAGAACGTGGGTGGAAGCGGGGGGGG
GGGGGGAGGGGGCAGGCGCGTGCGGCCGGTCAAGCGTATAGGAAAGTAAC
GAAAGCAAGGACATATTTATGTATCAGTGCGGGAACGACGAAGGTCAATT
AAGATTACATGAAAGCATTCCTAATTCACGAGAGAGGAAAATAAGGAGAC
GAACAAGGTGACAGATAAATGTATGCATGATGAAGCATTTACCATGAAGC
ATTGCTGTTCCCTTTTCTACTTTCTTCCTTCCGTCCCTGGCCACTGCGAC
CCCGCAAAAACGCCGAACACTTACTTCATACATCCTACCGACGCTTTCTC
CTTTCTTGTGTCAATAGACCTCATATGTATCCATCCGCTTCTGATTCTGC
TACTGCTGCTGCTGCACAATCCTCAACACATGTGCTACAATCGACCCCTT
ACCTCACCCTCGATGTATCTTCCTCCCTCCC
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protein sequence of NO01G03030.1

>NO01G03030.1-protein ID=NO01G03030.1-protein|Name=NO01G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MLKVKLRHLNVVEGELNAASEDALRVAIPIRADCPEGDRAVLQPALAKGG
QNTEQRWLGRMVSNTLGEIRKRGDLCDSKGAMLKVDIETETVEVEKLLDT
KKRKLAEISELKDRVDAIRKKVLVQVSSNCLKEIKALRPLPPTSHQDQQG
KAVAAEQQQQQAAAAMQESAILTQVPPLQERARVCVEELGMRSEQLAARI
ESLRTTITAVSNFLKGAPSKVEKAIRQSHRKGVEGEGRGVEEVEREEQGS
AERRTRRKKGSPSPATSPAAAASVAPSSAISMLAAHLGQS*
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mRNA from alignment at chr1:793641..796398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03030.1 ID=NO01G03030.1|Name=NO01G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2758bp|location=Sequence derived from alignment at chr1:793641..796398- (Nannochloropsis oceanica)
TGGGACATGGCTGTGCTGTGTGCTTGCAGGTGTGGGACCGGGTCAGATTG TCGTCTGTTGAGTGTTGATTCTTCTTGTGTGGACTGTTGCTTGCTCGCCG TGATTTTGTGTATGGACTCGTACTTTGGCGGGAGCAGGAAAGTAAAATGT TGCTCATGCGACAAAGCTATCGAAGTGACATGCTGCGAGACCATACGGGA TGATTGGGGAGACGCAGGCCTCGTGTCATGATCCCGAAACGAGGGGGATG AGCAACGGGCAAGGAATCAAATTTGGCGACTCGTGAGGCGTCCGCTTGCT TCTTCTGCGCACTCCCAGGCAGGTCAAAAACTTTCCCCAAACTTGAAACA CACAGATGTCTTGGGACTTTGGCTTTGGGTTGTTCATTCCCGTGGTTGCC ACAGCAAGCGGTCGTTGACGCTATCCCGTGATAGCACGCGTCCAAGTAAG CACTTTTGTCTTCTTCACGCTCAGACAGACCCATACTCGAACTTCCCACA GGAAACCAACCCCACCACGACACGGACCCGAGCATGCTCAAAGTCAAGCT ACGCCACCTCAATGTGGTGGAAGGGGAGCTGAATGCCGCGTCGGAGGATG CCTTGCGGGTAAGTGGAGGGCTTCTTCGCTATTGTCCTCGTTAATTTCTG CACGCTGTGCTATCAAACACTCATCTCTTCTTCGCCCTATATGCCTCGAA GGTCGCCATCCCTATCCGCGCCGATTGCCCTGAAGGAGATCGGGCAGTGC TTCAGCCAGCCCTTGCCAAGGGAGGACAGAACACGGAGCAGCGGTGGCTT GGTAAGTGGTGCTGAAATCATATACTCCCACATGAGGTCACCCCTTATGC CCTGCACTTGTTCCTGCGTTCTTCCAGCTATCTCATTCGATCATCTCTTG TTTCCTTTCCCCTATTTGTTTGCAGGTCTATCGGCATGCGTATTGTGTTG CTCTCTCCTTCAGCTCTGGTTTTCCGCCTCTGCACCTCTTCTCATTTAAT CCTTTCCTTCCCTATCATCCCATCTCAACGAATGACAGGTCGGATGGTGA GCAACACCCTCGGCGAGATTCGAAAGCGAGGGGATTTATGTGACAGCAAG GGGGCCATGCTTAAGGTGGACATCGAAACCGAGACCGTCGAGGGTACGAG GGAGGAAAATAAGAGTGAGAAGGAACAGTAGGAGAGGAAGTAGAAAGAAT GGGAGGAATGGTTGCACACTCATTCTCACTCGTTTTGCGTATCTGAGAAG AAGGAAATGGTTGAGAAGCAGCAACAGTAAAGAGACGTCATTTAAATGAA ATTAATATTCGTATCCAAGAAGAAGGAAATGGTTGAGAAGCAGCAGCAGT AAATGGACGTCATTTGAATGAAATTAATATTCGTATCCACTCATTCCCCC TTATCCGACCCCTCCCCCACCCTACCCATACCAAAACCAGTGGAAAAACT TCTGGACACCAAAAAACGTAAGCTCGCTGAGATTTCCGAGCTTAAAGATC GTGTCGATGCAATTCGGAAGAAGGTGCTGGTCCAAGTATCGTCCAACTGC CTCAAGGAAATAAAGGCCCTCCGACCCCTCCCTCCCACCTCCCACCAGGA CCAACAAGGAAAAGCTGTCGCCGCTGAGCAACAGCAACAACAAGCAGCTG CGGCCATGCAGGAAAGCGCGATCTTGACTCAGGTCCCTCCGTTGCAGGAG CGAGCAAGGGTGTGTGTGGAAGAGTTGGGGATGAGGTCAGAGCAGCTGGC GGCGAGGATCGAGAGCCTCCGGACCACCATTACGGCGGTGTCTAATTTTT TGAAGGGCGCGCCAAGTAAAGTGGAGAAGGCGATTCGACAGAGTCACCGG AAAGGGGTGGAAGGAGAAGGACGAGGGGTTGAAGAGGTCGAGAGGGAAGA GCAAGGGTCGGCGGAGCGGAGGACGAGGAGGAAGAAGGGCAGTCCGTCTC CTGCTACTTCCCCTGCCGCTGCTGCGTCCGTGGCCCCATCGAGTGCGATT TCGATGCTCGCGGCCCATTTGGGTCAAAGTTGAAGTAGGGAAGACAGGGG AGAACGGTAATTGTAATTTCGGTGATTGTTTTTTTAATCAGGTTGACTTT TGTCGTGTGTCCGTTATCTCCGCATGTATAAAAATGTAATCTGATTATGA CGACCTCCTCGTCCTTGATCCCGCCAATGGCAGATGAAGGGGGCAGAGGG GGCAGGAGTGTGAAGAAGAGAGAGAGGAAGAAAGAATGAGAAAGCGGAGG AGGCAGGAAGAATGTGGGTGGGAGAGAGGGAAGAGGGAGGGGATCAAGGT TGAGAACGTGGGTGGAAGCGGGGGGGGGGGGGGAGGGGGCAGGCGCGTGC GGCCGGTCAAGCGTATAGGAAAGTAACGAAAGCAAGGACATATTTATGTA TCAGTGCGGGAACGACGAAGGTCAATTAAGATTACATGAAAGCATTCCTA ATTCACGAGAGAGGAAAATAAGGAGACGAACAAGGTGACAGATAAATGTA TGCATGATGAAGCATTTACCATGAAGCATTGCTGTTCCCTTTTCTACTTT CTTCCTTCCGTCCCTGGCCACTGCGACCCCGCAAAAACGCCGAACACTTA CTTCATACATCCTACCGACGCTTTCTCCTTTCTTGTGTCAATAGACCTCA TATGTATCCATCCGCTTCTGATTCTGCTACTGCTGCTGCTGCACAATCCT CAACACATGTGCTACAATCGACCCCTTACCTCACCCTCGATGTATCTTCC TCCCTCCC
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Coding sequence (CDS) from alignment at chr1:793641..796398-

>NO01G03030.1 ID=NO01G03030.1|Name=NO01G03030.1|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr1:793641..796398- (Nannochloropsis oceanica)
ATGCTCAAAGTCAAGCTACGCCACCTCAATGTGGTGGAAGGGGAGCTGAA
TGCCGCGTCGGAGGATGCCTTGCGGGTCGCCATCCCTATCCGCGCCGATT
GCCCTGAAGGAGATCGGGCAGTGCTTCAGCCAGCCCTTGCCAAGGGAGGA
CAGAACACGGAGCAGCGGTGGCTTGGTCGGATGGTGAGCAACACCCTCGG
CGAGATTCGAAAGCGAGGGGATTTATGTGACAGCAAGGGGGCCATGCTTA
AGGTGGACATCGAAACCGAGACCGTCGAGGTGGAAAAACTTCTGGACACC
AAAAAACGTAAGCTCGCTGAGATTTCCGAGCTTAAAGATCGTGTCGATGC
AATTCGGAAGAAGGTGCTGGTCCAAGTATCGTCCAACTGCCTCAAGGAAA
TAAAGGCCCTCCGACCCCTCCCTCCCACCTCCCACCAGGACCAACAAGGA
AAAGCTGTCGCCGCTGAGCAACAGCAACAACAAGCAGCTGCGGCCATGCA
GGAAAGCGCGATCTTGACTCAGGTCCCTCCGTTGCAGGAGCGAGCAAGGG
TGTGTGTGGAAGAGTTGGGGATGAGGTCAGAGCAGCTGGCGGCGAGGATC
GAGAGCCTCCGGACCACCATTACGGCGGTGTCTAATTTTTTGAAGGGCGC
GCCAAGTAAAGTGGAGAAGGCGATTCGACAGAGTCACCGGAAAGGGGTGG
AAGGAGAAGGACGAGGGGTTGAAGAGGTCGAGAGGGAAGAGCAAGGGTCG
GCGGAGCGGAGGACGAGGAGGAAGAAGGGCAGTCCGTCTCCTGCTACTTC
CCCTGCCGCTGCTGCGTCCGTGGCCCCATCGAGTGCGATTTCGATGCTCG
CGGCCCATTTGGGTCAAAGTTGA
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Synonyms
Publications