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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:793641..796398 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03030.1 vs.
Match: EWM29225.1 (hypothetical protein Naga_100203g11 [Nannochloropsis gaditana]) HSP 1 Score: 158.7 bits (400), Expect = 2.800e-35 Identity = 112/229 (48.91%), Postives = 142/229 (62.01%), Query Frame = 0
Query: 61 MVSNTLGEIRKRGDLCDSKGAMLKVDIETETVEVEKLLDTKKRKLAEISELKDRVDAIRKKVLVQVSSNCLKEIKALRPLPPTSHQDQQGKAVAAEQQQQQAAAAMQESAILTQVPPLQERARVCVEELGMRSEQLAARIESLRTTITAVSNFLKGAPSKVEKAIRQSHRKGVEGEGRGVEEVEREEQGSAERRTRRKKGSPSPATSPAAAASVAPS--SAISMLAAHL 288
MV+NTLGEIRKR DLCDSKGAMLKVDIE E EV+KLL +KKRKLAEI+ELK RV +R+KVL SS C KALRP + +A A + QA +++ +L ++ PLQE+AR CVEEL SE LA R+ESL T TAV++ LK PS+V+KAIRQ R G+E +R G E ++ A +PA + P+ S IS+L+AHL
Sbjct: 1 MVTNTLGEIRKRADLCDSKGAMLKVDIENEATEVDKLLQSKKRKLAEIAELKSRVSVMRRKVLDLTSSRCASWCKALRPAEAAA-----AEAGAERRAAAQAVESLRGRDVLAEISPLQEKARQCVEELAGGSELLARRVESLGQTSTAVTSLLKSKPSRVDKAIRQGPRDGLESR---KSARKRPGAGGYENNPANRE-----ARAPADEETATPALMSGISLLSAHL 216
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03030.1 ID=NO01G03030.1|Name=NO01G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2131bp TGGGACATGGCTGTGCTGTGTGCTTGCAGGTGTGGGACCGGGTCAGATTG TCGTCTGTTGAGTGTTGATTCTTCTTGTGTGGACTGTTGCTTGCTCGCCG TGATTTTGTGTATGGACTCGTACTTTGGCGGGAGCAGGAAAGTAAAATGT TGCTCATGCGACAAAGCTATCGAAGTGACATGCTGCGAGACCATACGGGA TGATTGGGGAGACGCAGGCCTCGTGTCATGATCCCGAAACGAGGGGGATG AGCAACGGGCAAGGAATCAAATTTGGCGACTCGTGAGGCGTCCGCTTGCT TCTTCTGCGCACTCCCAGGCAGGTCAAAAACTTTCCCCAAACTTGAAACA CACAGATGTCTTGGGACTTTGGCTTTGGGTTGTTCATTCCCGTGGTTGCC ACAGCAAGCGGTCGTTGACGCTATCCCGTGATAGCACGCGTCCAAGTAAG CACTTTTGTCTTCTTCACGCTCAGACAGACCCATACTCGAACTTCCCACA GGAAACCAACCCCACCACGACACGGACCCGAGCATGCTCAAAGTCAAGCT ACGCCACCTCAATGTGGTGGAAGGGGAGCTGAATGCCGCGTCGGAGGATG CCTTGCGGGTCGCCATCCCTATCCGCGCCGATTGCCCTGAAGGAGATCGG GCAGTGCTTCAGCCAGCCCTTGCCAAGGGAGGACAGAACACGGAGCAGCG GTGGCTTGGTCGGATGGTGAGCAACACCCTCGGCGAGATTCGAAAGCGAG GGGATTTATGTGACAGCAAGGGGGCCATGCTTAAGGTGGACATCGAAACC GAGACCGTCGAGGTGGAAAAACTTCTGGACACCAAAAAACGTAAGCTCGC TGAGATTTCCGAGCTTAAAGATCGTGTCGATGCAATTCGGAAGAAGGTGC TGGTCCAAGTATCGTCCAACTGCCTCAAGGAAATAAAGGCCCTCCGACCC CTCCCTCCCACCTCCCACCAGGACCAACAAGGAAAAGCTGTCGCCGCTGA GCAACAGCAACAACAAGCAGCTGCGGCCATGCAGGAAAGCGCGATCTTGA CTCAGGTCCCTCCGTTGCAGGAGCGAGCAAGGGTGTGTGTGGAAGAGTTG GGGATGAGGTCAGAGCAGCTGGCGGCGAGGATCGAGAGCCTCCGGACCAC CATTACGGCGGTGTCTAATTTTTTGAAGGGCGCGCCAAGTAAAGTGGAGA AGGCGATTCGACAGAGTCACCGGAAAGGGGTGGAAGGAGAAGGACGAGGG GTTGAAGAGGTCGAGAGGGAAGAGCAAGGGTCGGCGGAGCGGAGGACGAG GAGGAAGAAGGGCAGTCCGTCTCCTGCTACTTCCCCTGCCGCTGCTGCGT CCGTGGCCCCATCGAGTGCGATTTCGATGCTCGCGGCCCATTTGGGTCAA AGTTGAAGTAGGGAAGACAGGGGAGAACGGTAATTGTAATTTCGGTGATT GTTTTTTTAATCAGGTTGACTTTTGTCGTGTGTCCGTTATCTCCGCATGT ATAAAAATGTAATCTGATTATGACGACCTCCTCGTCCTTGATCCCGCCAA TGGCAGATGAAGGGGGCAGAGGGGGCAGGAGTGTGAAGAAGAGAGAGAGG AAGAAAGAATGAGAAAGCGGAGGAGGCAGGAAGAATGTGGGTGGGAGAGA GGGAAGAGGGAGGGGATCAAGGTTGAGAACGTGGGTGGAAGCGGGGGGGG GGGGGGAGGGGGCAGGCGCGTGCGGCCGGTCAAGCGTATAGGAAAGTAAC GAAAGCAAGGACATATTTATGTATCAGTGCGGGAACGACGAAGGTCAATT AAGATTACATGAAAGCATTCCTAATTCACGAGAGAGGAAAATAAGGAGAC GAACAAGGTGACAGATAAATGTATGCATGATGAAGCATTTACCATGAAGC ATTGCTGTTCCCTTTTCTACTTTCTTCCTTCCGTCCCTGGCCACTGCGAC CCCGCAAAAACGCCGAACACTTACTTCATACATCCTACCGACGCTTTCTC CTTTCTTGTGTCAATAGACCTCATATGTATCCATCCGCTTCTGATTCTGC TACTGCTGCTGCTGCACAATCCTCAACACATGTGCTACAATCGACCCCTT ACCTCACCCTCGATGTATCTTCCTCCCTCCC back to topprotein sequence of NO01G03030.1 >NO01G03030.1-protein ID=NO01G03030.1-protein|Name=NO01G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp MLKVKLRHLNVVEGELNAASEDALRVAIPIRADCPEGDRAVLQPALAKGG QNTEQRWLGRMVSNTLGEIRKRGDLCDSKGAMLKVDIETETVEVEKLLDT KKRKLAEISELKDRVDAIRKKVLVQVSSNCLKEIKALRPLPPTSHQDQQG KAVAAEQQQQQAAAAMQESAILTQVPPLQERARVCVEELGMRSEQLAARI ESLRTTITAVSNFLKGAPSKVEKAIRQSHRKGVEGEGRGVEEVEREEQGS AERRTRRKKGSPSPATSPAAAASVAPSSAISMLAAHLGQS* back to topmRNA from alignment at chr1:793641..796398- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03030.1 ID=NO01G03030.1|Name=NO01G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2758bp|location=Sequence derived from alignment at chr1:793641..796398- (Nannochloropsis oceanica) TGGGACATGGCTGTGCTGTGTGCTTGCAGGTGTGGGACCGGGTCAGATTG
TCGTCTGTTGAGTGTTGATTCTTCTTGTGTGGACTGTTGCTTGCTCGCCG
TGATTTTGTGTATGGACTCGTACTTTGGCGGGAGCAGGAAAGTAAAATGT
TGCTCATGCGACAAAGCTATCGAAGTGACATGCTGCGAGACCATACGGGA
TGATTGGGGAGACGCAGGCCTCGTGTCATGATCCCGAAACGAGGGGGATG
AGCAACGGGCAAGGAATCAAATTTGGCGACTCGTGAGGCGTCCGCTTGCT
TCTTCTGCGCACTCCCAGGCAGGTCAAAAACTTTCCCCAAACTTGAAACA
CACAGATGTCTTGGGACTTTGGCTTTGGGTTGTTCATTCCCGTGGTTGCC
ACAGCAAGCGGTCGTTGACGCTATCCCGTGATAGCACGCGTCCAAGTAAG
CACTTTTGTCTTCTTCACGCTCAGACAGACCCATACTCGAACTTCCCACA
GGAAACCAACCCCACCACGACACGGACCCGAGCATGCTCAAAGTCAAGCT
ACGCCACCTCAATGTGGTGGAAGGGGAGCTGAATGCCGCGTCGGAGGATG
CCTTGCGGGTAAGTGGAGGGCTTCTTCGCTATTGTCCTCGTTAATTTCTG
CACGCTGTGCTATCAAACACTCATCTCTTCTTCGCCCTATATGCCTCGAA
GGTCGCCATCCCTATCCGCGCCGATTGCCCTGAAGGAGATCGGGCAGTGC
TTCAGCCAGCCCTTGCCAAGGGAGGACAGAACACGGAGCAGCGGTGGCTT
GGTAAGTGGTGCTGAAATCATATACTCCCACATGAGGTCACCCCTTATGC
CCTGCACTTGTTCCTGCGTTCTTCCAGCTATCTCATTCGATCATCTCTTG
TTTCCTTTCCCCTATTTGTTTGCAGGTCTATCGGCATGCGTATTGTGTTG
CTCTCTCCTTCAGCTCTGGTTTTCCGCCTCTGCACCTCTTCTCATTTAAT
CCTTTCCTTCCCTATCATCCCATCTCAACGAATGACAGGTCGGATGGTGA
GCAACACCCTCGGCGAGATTCGAAAGCGAGGGGATTTATGTGACAGCAAG
GGGGCCATGCTTAAGGTGGACATCGAAACCGAGACCGTCGAGGGTACGAG
GGAGGAAAATAAGAGTGAGAAGGAACAGTAGGAGAGGAAGTAGAAAGAAT
GGGAGGAATGGTTGCACACTCATTCTCACTCGTTTTGCGTATCTGAGAAG
AAGGAAATGGTTGAGAAGCAGCAACAGTAAAGAGACGTCATTTAAATGAA
ATTAATATTCGTATCCAAGAAGAAGGAAATGGTTGAGAAGCAGCAGCAGT
AAATGGACGTCATTTGAATGAAATTAATATTCGTATCCACTCATTCCCCC
TTATCCGACCCCTCCCCCACCCTACCCATACCAAAACCAGTGGAAAAACT
TCTGGACACCAAAAAACGTAAGCTCGCTGAGATTTCCGAGCTTAAAGATC
GTGTCGATGCAATTCGGAAGAAGGTGCTGGTCCAAGTATCGTCCAACTGC
CTCAAGGAAATAAAGGCCCTCCGACCCCTCCCTCCCACCTCCCACCAGGA
CCAACAAGGAAAAGCTGTCGCCGCTGAGCAACAGCAACAACAAGCAGCTG
CGGCCATGCAGGAAAGCGCGATCTTGACTCAGGTCCCTCCGTTGCAGGAG
CGAGCAAGGGTGTGTGTGGAAGAGTTGGGGATGAGGTCAGAGCAGCTGGC
GGCGAGGATCGAGAGCCTCCGGACCACCATTACGGCGGTGTCTAATTTTT
TGAAGGGCGCGCCAAGTAAAGTGGAGAAGGCGATTCGACAGAGTCACCGG
AAAGGGGTGGAAGGAGAAGGACGAGGGGTTGAAGAGGTCGAGAGGGAAGA
GCAAGGGTCGGCGGAGCGGAGGACGAGGAGGAAGAAGGGCAGTCCGTCTC
CTGCTACTTCCCCTGCCGCTGCTGCGTCCGTGGCCCCATCGAGTGCGATT
TCGATGCTCGCGGCCCATTTGGGTCAAAGTTGAAGTAGGGAAGACAGGGG
AGAACGGTAATTGTAATTTCGGTGATTGTTTTTTTAATCAGGTTGACTTT
TGTCGTGTGTCCGTTATCTCCGCATGTATAAAAATGTAATCTGATTATGA
CGACCTCCTCGTCCTTGATCCCGCCAATGGCAGATGAAGGGGGCAGAGGG
GGCAGGAGTGTGAAGAAGAGAGAGAGGAAGAAAGAATGAGAAAGCGGAGG
AGGCAGGAAGAATGTGGGTGGGAGAGAGGGAAGAGGGAGGGGATCAAGGT
TGAGAACGTGGGTGGAAGCGGGGGGGGGGGGGGAGGGGGCAGGCGCGTGC
GGCCGGTCAAGCGTATAGGAAAGTAACGAAAGCAAGGACATATTTATGTA
TCAGTGCGGGAACGACGAAGGTCAATTAAGATTACATGAAAGCATTCCTA
ATTCACGAGAGAGGAAAATAAGGAGACGAACAAGGTGACAGATAAATGTA
TGCATGATGAAGCATTTACCATGAAGCATTGCTGTTCCCTTTTCTACTTT
CTTCCTTCCGTCCCTGGCCACTGCGACCCCGCAAAAACGCCGAACACTTA
CTTCATACATCCTACCGACGCTTTCTCCTTTCTTGTGTCAATAGACCTCA
TATGTATCCATCCGCTTCTGATTCTGCTACTGCTGCTGCTGCACAATCCT
CAACACATGTGCTACAATCGACCCCTTACCTCACCCTCGATGTATCTTCC
TCCCTCCC back to topCoding sequence (CDS) from alignment at chr1:793641..796398- >NO01G03030.1 ID=NO01G03030.1|Name=NO01G03030.1|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr1:793641..796398- (Nannochloropsis oceanica) ATGCTCAAAGTCAAGCTACGCCACCTCAATGTGGTGGAAGGGGAGCTGAA TGCCGCGTCGGAGGATGCCTTGCGGGTCGCCATCCCTATCCGCGCCGATT GCCCTGAAGGAGATCGGGCAGTGCTTCAGCCAGCCCTTGCCAAGGGAGGA CAGAACACGGAGCAGCGGTGGCTTGGTCGGATGGTGAGCAACACCCTCGG CGAGATTCGAAAGCGAGGGGATTTATGTGACAGCAAGGGGGCCATGCTTA AGGTGGACATCGAAACCGAGACCGTCGAGGTGGAAAAACTTCTGGACACC AAAAAACGTAAGCTCGCTGAGATTTCCGAGCTTAAAGATCGTGTCGATGC AATTCGGAAGAAGGTGCTGGTCCAAGTATCGTCCAACTGCCTCAAGGAAA TAAAGGCCCTCCGACCCCTCCCTCCCACCTCCCACCAGGACCAACAAGGA AAAGCTGTCGCCGCTGAGCAACAGCAACAACAAGCAGCTGCGGCCATGCA GGAAAGCGCGATCTTGACTCAGGTCCCTCCGTTGCAGGAGCGAGCAAGGG TGTGTGTGGAAGAGTTGGGGATGAGGTCAGAGCAGCTGGCGGCGAGGATC GAGAGCCTCCGGACCACCATTACGGCGGTGTCTAATTTTTTGAAGGGCGC GCCAAGTAAAGTGGAGAAGGCGATTCGACAGAGTCACCGGAAAGGGGTGG AAGGAGAAGGACGAGGGGTTGAAGAGGTCGAGAGGGAAGAGCAAGGGTCG GCGGAGCGGAGGACGAGGAGGAAGAAGGGCAGTCCGTCTCCTGCTACTTC CCCTGCCGCTGCTGCGTCCGTGGCCCCATCGAGTGCGATTTCGATGCTCG CGGCCCATTTGGGTCAAAGTTGA back to top
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