NO01G02990, NO01G02990 (gene) Nannochloropsis oceanica

Overview
NameNO01G02990
Unique NameNO01G02990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length930
Alignment locationchr1:788258..789187 -

Link to JBrowse

Properties
Property NameValue
DescriptionMethyltransferase family protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:788258..789187 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR026113MeTrfase
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
BLAST of NO01G02990 vs. NCBI_GenBank
Match: EWM29229.1 (methyltransferase family protein [Nannochloropsis gaditana])

HSP 1 Score: 353.6 bits (906), Expect = 6.200e-94
Identity = 171/278 (61.51%), Postives = 205/278 (73.74%), Query Frame = 0
Query:   35 KRPIAGAYHDHDFDFEELKALVEPTLQRVPLLLSGDRMRPEPTPCEAWDGFFILHARKSSFFKTRRYLALEFPELLDGMGTSTTT------LLELGCGYGSSLAAVLDANSSILCFACDLSATALSLLDQTLGPVHKQRLVTFVCDVVEQDFPHDVVLPGSMDIVLMTFMLSAVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQGRKRLNTQLFMRADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFLHAKLQR 307
            K  +AGAYHDHDFDF+  +   EPTL  V  L   D  R E  P +AW+ FF  H+ K++FFK RRYL LEFPELLD  G    T      LLE+GCGYGSSLAA+++AN  ++CFACDLS TAL LLD+ LG ++KQRL  F+CDVV+ D P  +VLPGSMD VLMTFMLSA+G +E H AVF R++A LRPGGLLLFRDYGWCDAKM++ R R+  QL+ RADGTLAYFF  E++ QLA  +GF V ECKYATVLSKNR     ++RVF+HAKLQR
Sbjct:    5 KCAVAGAYHDHDFDFDAYRRSTEPTLATVSCLPREDIFRAESPPVQAWESFFHRHSDKATFFKKRRYLVLEFPELLDKAGEYAATNNFKCRLLEIGCGYGSSLAAIMEANPDLICFACDLSTTALHLLDRALGDIYKQRLTAFICDVVKNDIPCHLVLPGSMDFVLMTFMLSAIGKKEEHQAVFHRAYAALRPGGLLLFRDYGWCDAKMVRSRNRIGQQLYKRADGTLAYFFTAEDINQLASTAGFHVQECKYATVLSKNRATREELKRVFVHAKLQR 282          
BLAST of NO01G02990 vs. NCBI_GenBank
Match: XP_005855813.1 (methyltransferase family protein, partial [Nannochloropsis gaditana CCMP526] >EKU20546.1 methyltransferase family protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 352.4 bits (903), Expect = 1.400e-93
Identity = 171/279 (61.29%), Postives = 206/279 (73.84%), Query Frame = 0
Query:   35 KRPIAGAYHDHDFDFEELKALVEPTLQRVPLLLSGDRMRPEPTPCEAWDGFFILHARKSSFFKTRRYLALEFPELLDGMGTSTTT-------LLELGCGYGSSLAAVLDANSSILCFACDLSATALSLLDQTLGPVHKQRLVTFVCDVVEQDFPHDVVLPGSMDIVLMTFMLSAVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQGRKRLNTQLFMRADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFLHAKLQR 307
            K  +AGAYHDHDFDF+  +   EPTL  V  L   D +R E  P +AW+ FF  H+ K++FFK RRYL LEFPELLD  G    T       LLE+GCGYGSSLAA+++AN  ++CFACDLS TAL LLD+ LG ++KQRL  F+CDVV+ D P  +VLPGSMD VLMTFMLSA+G +E H AVF R++A LRPGGLLLFRDYGWCDAKM++ R R+  QL+ RADGTLAYFF  E++ QLA  +GF V ECKYATVLSKNR     ++RVF+HAKLQR
Sbjct:    7 KCAVAGAYHDHDFDFDAYRRSTEPTLATVSCLPREDIVRAESPPVQAWESFFHRHSDKATFFKKRRYLVLEFPELLDKAGEYAATNNFVKCRLLEIGCGYGSSLAAIMEANPDLICFACDLSTTALHLLDRALGDIYKQRLTAFICDVVKNDIPCHLVLPGSMDFVLMTFMLSAIGRKEEHQAVFHRAYAALRPGGLLLFRDYGWCDAKMVRSRNRIGQQLYKRADGTLAYFFTAEDINQLAITAGFHVQECKYATVLSKNRATREELKRVFVHAKLQR 285          
BLAST of NO01G02990 vs. NCBI_GenBank
Match: ETI40371.1 (hypothetical protein F443_14212 [Phytophthora parasitica P1569] >ETL87174.1 hypothetical protein L917_13555 [Phytophthora parasitica] >ETM40364.1 hypothetical protein L914_13661 [Phytophthora parasitica])

HSP 1 Score: 172.6 bits (436), Expect = 2.000e-39
Identity = 105/272 (38.60%), Postives = 153/272 (56.25%), Query Frame = 0
Query:   43 HDHDFDFEELKALVEPTLQRVPLLLSGD----RMRPEPTPCEAWDGFFILHARKS-SFFKTRRYLALEFPELLDGMGTSTTTLLELGCGYGSSLAAVLDANSSILCFACDLSATALSLLDQTLGPVHKQRLVTFVCDVVEQDFPHDVVLPGSMDIVLMTFMLSAVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQGRKRLNTQLFMRADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFLHAKLQRDWK 310
            H  DF++E+L    E   +    ++ G+     +  +    EA D + + H R +   +K R YL  EFPEL          +LELGCGYGS++  +L    +I    CD SA A+ +L Q       +R   FVCD+ +++     V P S+DIVLM F+LSA+   E+     Q+  A LRPGG++ FRDYG  D  M +  K+L   L+ R+DGTLAYFF  E + +L + +GF+VLE +Y TV  +NR+KG  + RV+LHAKL++  K
Sbjct:   30 HSRDFEWEDLARECEMHAKERDEVVEGEVKEGPLETQQLAKEAKDKWDVFHQRNNGKVYKPRNYLVKEFPELY-APEREVVEVLELGCGYGSAIFPILAECPNIHAQVCDFSAHAIDIL-QHNPEYDPKRCRAFVCDIAQEELTR--VAPESIDIVLMVFVLSAL-PPESFAQTLQKIFAALRPGGIVCFRDYGLYDLAMRRNAKKLGPSLYYRSDGTLAYFFSREVLAELFEKAGFQVLENEYCTVRLRNRKKGVTMDRVWLHAKLKKKLK 296          
BLAST of NO01G02990 vs. NCBI_GenBank
Match: XP_008909781.1 (hypothetical protein PPTG_14607 [Phytophthora parasitica INRA-310] >ETN04844.1 hypothetical protein PPTG_14607 [Phytophthora parasitica INRA-310])

HSP 1 Score: 172.2 bits (435), Expect = 2.600e-39
Identity = 105/272 (38.60%), Postives = 153/272 (56.25%), Query Frame = 0
Query:   43 HDHDFDFEELKALVEPTLQRVPLLLSGD----RMRPEPTPCEAWDGFFILHARKS-SFFKTRRYLALEFPELLDGMGTSTTTLLELGCGYGSSLAAVLDANSSILCFACDLSATALSLLDQTLGPVHKQRLVTFVCDVVEQDFPHDVVLPGSMDIVLMTFMLSAVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQGRKRLNTQLFMRADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFLHAKLQRDWK 310
            H  DF++E+L    E   +    ++ G+     +  +    EA D + + H R +   +K R YL  EFPEL          +LELGCGYGS++  +L    +I    CD SA A+ +L Q       +R   FVCD+ +++     V P S+DIVLM F+LSA+   E+     Q+  A LRPGG++ FRDYG  D  M +  K+L   L+ R+DGTLAYFF  E + +L + +GF+VLE +Y TV  +NR+KG  + RV+LHAKL++  K
Sbjct:   30 HSRDFEWEDLARECEMHAKERDEVVEGEVKEGPLETQQLAKEAKDKWDVFHQRNNGKVYKPRNYLVKEFPELY-APEREVVEVLELGCGYGSAIFPILAECPNIHAQVCDFSAHAIDIL-QHNPEYDPKRCRAFVCDIAQEELTR--VAPESIDIVLMVFVLSAL-PPESFAQTLQKIFAALRPGGIVCFRDYGLYDLAMRRNAKKLGPSLYYRSDGTLAYFFSREVLAELFEKAGFQVLENEYCTVRLRNRKKGVTMDRVWLHAKLKKKKK 296          
BLAST of NO01G02990 vs. NCBI_GenBank
Match: ETK80476.1 (hypothetical protein L915_13852 [Phytophthora parasitica] >ETL33901.1 hypothetical protein L916_13749 [Phytophthora parasitica] >ETP10197.1 hypothetical protein F441_14107 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 171.8 bits (434), Expect = 3.400e-39
Identity = 105/272 (38.60%), Postives = 153/272 (56.25%), Query Frame = 0
Query:   43 HDHDFDFEELKALVEPTLQRVPLLLSGD----RMRPEPTPCEAWDGFFILHARKS-SFFKTRRYLALEFPELLDGMGTSTTTLLELGCGYGSSLAAVLDANSSILCFACDLSATALSLLDQTLGPVHKQRLVTFVCDVVEQDFPHDVVLPGSMDIVLMTFMLSAVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQGRKRLNTQLFMRADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFLHAKLQRDWK 310
            H  DF++E+L    E   +    ++ G+     +  +    EA D + + H R +   +K R YL  EFPEL          +LELGCGYGS++  +L    +I    CD SA A+ +L Q       +R   FVCD+ +++     V P S+DIVLM F+LSA+   E+     Q+  A LRPGG++ FRDYG  D  M +  K+L   L+ R+DGTLAYFF  E + +L + +GF+VLE +Y TV  +NR+KG  + RV+LHAKL++  K
Sbjct:   30 HSRDFEWEDLAREREMHAKERDEVVEGEVKEGPLETQQLAKEAKDKWDVFHQRNNGKVYKPRNYLVKEFPELY-APEREVVEVLELGCGYGSAIFPILAECPNIHAQVCDFSAHAIDIL-QHNPEYDPKRCRAFVCDIAQEELTR--VAPESIDIVLMVFVLSAL-PPESFAQTLQKIFAALRPGGIVCFRDYGLYDLAMRRNAKKLGPSLYYRSDGTLAYFFSREVLAELFEKAGFQVLENEYCTVRLRNRKKGVTMDRVWLHAKLKKKLK 296          
BLAST of NO01G02990 vs. NCBI_GenBank
Match: ETO69083.1 (hypothetical protein F444_14231 [Phytophthora parasitica P1976] >ETP38284.1 hypothetical protein F442_14054 [Phytophthora parasitica P10297])

HSP 1 Score: 171.0 bits (432), Expect = 5.700e-39
Identity = 105/272 (38.60%), Postives = 152/272 (55.88%), Query Frame = 0
Query:   43 HDHDFDFEELKALVEPTLQRVPLLLSGD----RMRPEPTPCEAWDGFFILHARKS-SFFKTRRYLALEFPELLDGMGTSTTTLLELGCGYGSSLAAVLDANSSILCFACDLSATALSLLDQTLGPVHKQRLVTFVCDVVEQDFPHDVVLPGSMDIVLMTFMLSAVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQGRKRLNTQLFMRADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFLHAKLQRDWK 310
            H  DF++E+L    E   +    ++ G+     +  +    EA D + + H R +   +K R YL  EFPEL          +LELGCGYGS++  +L    +I    CD SA A+ +L        KQ    FVCD+ +++     V P S+DIVLM F+LSA+   E+     Q+  A LRPGG++ FRDYG  D  M +  K+L   L+ R+DGTLAYFF  E + +L + +GF+VLE +Y TV  +NR+KG  + RV+LHAKL++  K
Sbjct:   30 HSRDFEWEDLARECEMHAKERDEVVEGEVKEGPLETQQLAKEAKDKWDVFHQRNNGKVYKPRNYLVKEFPELY-APEREVVEVLELGCGYGSAIFPILAECPNIHAQVCDFSAHAIDILQHNPEYDPKQ-CRAFVCDIAQEELTR--VAPESIDIVLMVFVLSAL-PPESFAQTLQKIFAALRPGGIVCFRDYGLYDLAMRRNAKKLGPSLYYRSDGTLAYFFSREVLAELFEKTGFQVLENEYCTVRLRNRKKGVTMDRVWLHAKLKKKLK 296          
BLAST of NO01G02990 vs. NCBI_GenBank
Match: KUF80649.1 (Methyltransferase protein 6 [Phytophthora nicotianae] >KUF93329.1 hypothetical protein AM588_10007608 [Phytophthora nicotianae])

HSP 1 Score: 167.9 bits (424), Expect = 4.900e-38
Identity = 104/280 (37.14%), Postives = 153/280 (54.64%), Query Frame = 0
Query:   43 HDHDFDFEELKALVEPTLQRVPLLLSGD----RMRPEPTPCEAWDGFFILHARKSSF------------FKTRRYLALEFPELLDGMGTSTTTLLELGCGYGSSLAAVLDANSSILCFACDLSATALSLLDQTLGPVHKQRLVTFVCDVVEQDFPHDVVLPGSMDIVLMTFMLSAVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQGRKRLNTQLFMRADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFLHAKLQR 307
            H  DF++E+L    E   +    ++ G+     +  +    EA D + + H R + +            +K R YL  EFPEL          +LELGCGYGS++  +L    +I    CD SA A+ +L Q       +R   FVCD+ +++     V P S+DIVLM F+LSA+   E+     Q+  A LRPGG++ FRDYG  D  M +  K+L   L+ R+DGTLAYFF  E + +L + +GF+VLE +Y TV  +NR+KG  + RV+LHAKL++
Sbjct:   15 HSRDFEWEDLARECEMHAKERDEVVEGEVKEGPLETQQLAKEAKDKWDVFHQRNNGWLAVIALQTPGKVYKPRNYLVKEFPELY-APEREVVEVLELGCGYGSAIFPILAECPNIHAQVCDFSAHAIDIL-QHNPEYDPKRCRAFVCDIAQEELTR--VAPESIDIVLMVFVLSAL-PPESFAQTLQKIFAALRPGGIVCFRDYGLYDLAMRRNAKKLGPSLYYRSDGTLAYFFSREVLAELFEKAGFQVLENEYCTVRLRNRKKGVTMDRVWLHAKLKK 289          
BLAST of NO01G02990 vs. NCBI_GenBank
Match: XP_020183747.1 (methyltransferase-like protein 6 isoform X1 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 167.9 bits (424), Expect = 4.900e-38
Identity = 113/320 (35.31%), Postives = 159/320 (49.69%), Query Frame = 0
Query:   35 KRPIAGAYHDHDFDFEELKALVEPT------LQRVPLLLSGDRMRPEPTPCEAWDGFFILHARKSSFFKTRRYLALEFPELLDGMGTSTTTLLELGCGYGSSLAAVLDANSSILCFACDLSATAL----SLLDQTLGPVHKQRLVTFVCDVVEQDFP------------------------------------HDVVLPGSMDIVLMTFMLSAVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQ--GRKRLNTQLFMRADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFLHAKLQR 307
            K+     YH HDF++E+L+A VE        L   P + +     P+P   EAW  F   HA    FFK RRYL  EFPELL+  G +   +LE+GCG GS++  +L  + SI  +ACD S   L     ++  T G   K R   F+ DV +++FP                                     D    G +D + M FMLSA+       A  +R  +VL+PGGL+LFRDYG  D  ML+    +R+  + +MRADGT +YFF  + VR+L  A+G   LE +Y  V S NR+ G  +QRV++H K ++
Sbjct:   11 KKEAEAEYHCHDFEWEDLRADVEANPSFSYHLSPFPTITAS----PQPPSSEAWRSFHRCHA-SGKFFKERRYLLKEFPELLNSKGCA--KVLEVGCGNGSTVVPILRCSPSISVYACDCSEDTLEKANEIVCNTQGVDAKDRFHPFLLDVSKENFPGWLFCKCCQSSDGKVVDLSPDSSHLYVRGKNSISLKEDQCCVGGIDFITMIFMLSAIPFNTI-SATLERCMSVLKPGGLVLFRDYGVYDMTMLRFLPHQRVGFREYMRADGTYSYFFSLDTVRELFHAAGLLELELEYCCVRSVNRKNGKNMQRVWVHGKFKK 322          
BLAST of NO01G02990 vs. NCBI_GenBank
Match: XP_004956037.1 (methyltransferase-like protein 6 [Setaria italica])

HSP 1 Score: 164.9 bits (416), Expect = 4.100e-37
Identity = 116/307 (37.79%), Postives = 159/307 (51.79%), Query Frame = 0
Query:   42 YHDHDFDFEELKALVE--PTLQ------RVPLLLSGDRMRPEPTPCEAWDGFFILHARKSSFFKTRRYLALEFPELLDGMGTSTTTLLELGCGYGSSLAAVLDANSSILCFACDLSATAL----SLLDQTLGPVHKQRLVTFVCDVVEQDFP-----------HDV-----------------VLPGSMDIVLMTFMLSAVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQ--GRKRLNTQLFMRADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFLHAKLQR 307
            YH HDF++E+LKA VE  P         RVP   +    +P+P+  EAW  F   HA    FFK RRYL  EFPEL +    S   +LE+GCG GS+  ++L ++ SI  FACD S   L     ++  T G   K R   F+ DV ++ FP           HD                     G MD + M F LSA+       +  ++  +VL+PGGLLLFRDYG  D  ML+    +R+  + +MR+DGTL+YFF  + VR+L  A+G   LE +Y  V S NR+ G  +QRV++H K Q+
Sbjct:   22 YHSHDFEWEDLKAEVESDPAFSYHLSPFRVP--AASTTSQPQPS-SEAWRSFHRRHA-SGKFFKERRYLLKEFPELPNSKDYS--KILEVGCGNGSTAVSLLRSSESITVFACDCSKDTLEKANEIISNTKGIDIKDRFQPFLMDVSKETFPDWLCCIACKSSHDASHHKMRKEHPGFLRENQCCVGGMDFITMIFTLSAI-PFAIMPSTIEQCVSVLKPGGLLLFRDYGLYDMTMLRFLPHQRVGFREYMRSDGTLSYFFTLDTVRELFHAAGLVELELEYCCVKSVNRKNGKKMQRVWVHGKFQK 321          
BLAST of NO01G02990 vs. NCBI_GenBank
Match: KQL23343.1 (hypothetical protein SETIT_032944mg [Setaria italica])

HSP 1 Score: 164.5 bits (415), Expect = 5.400e-37
Identity = 114/304 (37.50%), Postives = 158/304 (51.97%), Query Frame = 0
Query:   42 YHDHDFDFEELKALVE--PTLQ------RVPLLLSGDRMRPEPTPCEAWDGFFILHARKSSFFKTRRYLALEFPELLDGMGTSTTTLLELGCGYGSSLAAVLDANSSILCFACDLSATAL----SLLDQTLGPVHKQRLVTFVCDVVEQDFP-------------------------HDVVLPGSMDIVLMTFMLSAVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQ--GRKRLNTQLFMRADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFLHAKLQR 307
            YH HDF++E+LKA VE  P         RVP   +    +P+P+  EAW  F   HA    FFK RRYL  EFPEL +    S   +LE+GCG GS+  ++L ++ SI  FACD S   L     ++  T G   K R   F+ DV ++ FP                          +    G MD + M F LSA+       +  ++  +VL+PGGLLLFRDYG  D  ML+    +R+  + +MR+DGTL+YFF  + VR+L  A+G   LE +Y  V S NR+ G  +QRV++H K Q+
Sbjct:   22 YHSHDFEWEDLKAEVESDPAFSYHLSPFRVP--AASTTSQPQPS-SEAWRSFHRRHA-SGKFFKERRYLLKEFPELPNSKDYS--KILEVGCGNGSTAVSLLRSSESITVFACDCSKDTLEKANEIISNTKGIDIKDRFQPFLMDVSKETFPDWLCCIACKNASHHKMRKEHPGFLRENQCCVGGMDFITMIFTLSAI-PFAIMPSTIEQCVSVLKPGGLLLFRDYGLYDMTMLRFLPHQRVGFREYMRSDGTLSYFFTLDTVRELFHAAGLVELELEYCCVKSVNRKNGKKMQRVWVHGKFQK 318          
The following BLAST results are available for this feature:
BLAST of NO01G02990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29229.16.200e-9461.51methyltransferase family protein [Nannochloropsis ... [more]
XP_005855813.11.400e-9361.29methyltransferase family protein, partial [Nannoch... [more]
ETI40371.12.000e-3938.60hypothetical protein F443_14212 [Phytophthora para... [more]
XP_008909781.12.600e-3938.60hypothetical protein PPTG_14607 [Phytophthora para... [more]
ETK80476.13.400e-3938.60hypothetical protein L915_13852 [Phytophthora para... [more]
ETO69083.15.700e-3938.60hypothetical protein F444_14231 [Phytophthora para... [more]
KUF80649.14.900e-3837.14Methyltransferase protein 6 [Phytophthora nicotian... [more]
XP_020183747.14.900e-3835.31methyltransferase-like protein 6 isoform X1 [Aegil... [more]
XP_004956037.14.100e-3737.79methyltransferase-like protein 6 [Setaria italica][more]
KQL23343.15.400e-3737.50hypothetical protein SETIT_032944mg [Setaria itali... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008026NSK008026Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02990.1NO01G02990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576854gene_300Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100203g7gene1398Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02990.1NO01G02990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02990 ID=NO01G02990|Name=NO01G02990|organism=Nannochloropsis oceanica|type=gene|length=930bp
ATGTCTCATAACCTGGCAAATGGTGCGGTCGTCAAGGCTGAAGGAGTCTC
ACACCTGTCTACAGTGTCTCCAAGACTATTAGCAGCCCTTCCCGCCACAG
CTAAGAGACCAATCGCAGGCGCTTATCACGATCATGACTTTGACTTTGAA
GAGCTCAAAGCCTTAGTCGAGCCGACCCTTCAGAGAGTTCCTCTACTACT
TTCAGGAGACCGAATGCGGCCAGAACCCACGCCTTGCGAGGCCTGGGACG
GGTTTTTTATTCTTCATGCCAGGAAATCTAGTTTTTTCAAGACCAGGCGA
TACTTGGCATTGGAGTTCCCAGAGCTACTCGATGGCATGGGTACGTCCAC
CACGACTCTGCTAGAACTCGGATGTGGGTATGGCTCATCTCTTGCGGCTG
TATTGGATGCAAACTCATCCATTCTTTGCTTTGCGTGTGATTTGAGCGCC
ACGGCATTGAGCCTCCTGGATCAAACTCTTGGTCCTGTTCACAAGCAGCG
ATTGGTAACATTTGTGTGTGACGTGGTCGAACAGGACTTCCCTCACGATG
TGGTGCTTCCGGGAAGCATGGATATTGTGCTGATGACGTTTATGCTTTCC
GCCGTTGGTACACGGGAGGCGCATCACGCTGTTTTCCAACGGTCTCATGC
CGTGCTCCGCCCTGGAGGCTTACTTTTGTTTCGTGACTACGGATGGTGCG
ACGCCAAGATGCTGCAAGGCCGGAAACGGCTAAATACACAGTTATTCATG
CGTGCTGACGGTACGCTTGCCTATTTCTTTAAGGAGGAAGAGGTGCGGCA
GTTGGCCAAAGCGTCGGGATTTCGGGTGCTGGAATGCAAATATGCAACTG
TGCTATCAAAAAACAGGCGAAAGGGTACGGCCATTCAGCGTGTCTTTTTG
CACGCCAAGCTACAGAGAGATTGGAAGTGA
back to top

protein sequence of NO01G02990.1

>NO01G02990.1-protein ID=NO01G02990.1-protein|Name=NO01G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MSHNLANGAVVKAEGVSHLSTVSPRLLAALPATAKRPIAGAYHDHDFDFE
ELKALVEPTLQRVPLLLSGDRMRPEPTPCEAWDGFFILHARKSSFFKTRR
YLALEFPELLDGMGTSTTTLLELGCGYGSSLAAVLDANSSILCFACDLSA
TALSLLDQTLGPVHKQRLVTFVCDVVEQDFPHDVVLPGSMDIVLMTFMLS
AVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQGRKRLNTQLFM
RADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFL
HAKLQRDWK*
back to top
Synonyms
Publications