NO01G02990.1, NO01G02990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02990.1
Unique NameNO01G02990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length930
Alignment locationchr1:788258..789187 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:788258..789187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02990.1 vs.
Match: EWM29229.1 (methyltransferase family protein [Nannochloropsis gaditana])

HSP 1 Score: 353.6 bits (906), Expect = 6.200e-94
Identity = 171/278 (61.51%), Postives = 205/278 (73.74%), Query Frame = 0 
Query:   35 KRPIAGAYHDHDFDFEELKALVEPTLQRVPLLLSGDRMRPEPTPCEAWDGFFILHARKSSFFKTRRYLALEFPELLDGMGTSTTT------LLELGCGYGSSLAAVLDANSSILCFACDLSATALSLLDQTLGPVHKQRLVTFVCDVVEQDFPHDVVLPGSMDIVLMTFMLSAVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQGRKRLNTQLFMRADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFLHAKLQR 307
            K  +AGAYHDHDFDF+  +   EPTL  V  L   D  R E  P +AW+ FF  H+ K++FFK RRYL LEFPELLD  G    T      LLE+GCGYGSSLAA+++AN  ++CFACDLS TAL LLD+ LG ++KQRL  F+CDVV+ D P  +VLPGSMD VLMTFMLSA+G +E H AVF R++A LRPGGLLLFRDYGWCDAKM++ R R+  QL+ RADGTLAYFF  E++ QLA  +GF V ECKYATVLSKNR     ++RVF+HAKLQR
Sbjct:    5 KCAVAGAYHDHDFDFDAYRRSTEPTLATVSCLPREDIFRAESPPVQAWESFFHRHSDKATFFKKRRYLVLEFPELLDKAGEYAATNNFKCRLLEIGCGYGSSLAAIMEANPDLICFACDLSTTALHLLDRALGDIYKQRLTAFICDVVKNDIPCHLVLPGSMDFVLMTFMLSAIGKKEEHQAVFHRAYAALRPGGLLLFRDYGWCDAKMVRSRNRIGQQLYKRADGTLAYFFTAEDINQLASTAGFHVQECKYATVLSKNRATREELKRVFVHAKLQR 282
The following BLAST results are available for this feature:
BLAST of NO01G02990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29229.16.200e-9461.51methyltransferase family protein [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02990NO01G02990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02990.1NO01G02990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02990.1.cds1NO01G02990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02990.1 ID=NO01G02990.1|Name=NO01G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=930bp
ATGTCTCATAACCTGGCAAATGGTGCGGTCGTCAAGGCTGAAGGAGTCTC
ACACCTGTCTACAGTGTCTCCAAGACTATTAGCAGCCCTTCCCGCCACAG
CTAAGAGACCAATCGCAGGCGCTTATCACGATCATGACTTTGACTTTGAA
GAGCTCAAAGCCTTAGTCGAGCCGACCCTTCAGAGAGTTCCTCTACTACT
TTCAGGAGACCGAATGCGGCCAGAACCCACGCCTTGCGAGGCCTGGGACG
GGTTTTTTATTCTTCATGCCAGGAAATCTAGTTTTTTCAAGACCAGGCGA
TACTTGGCATTGGAGTTCCCAGAGCTACTCGATGGCATGGGTACGTCCAC
CACGACTCTGCTAGAACTCGGATGTGGGTATGGCTCATCTCTTGCGGCTG
TATTGGATGCAAACTCATCCATTCTTTGCTTTGCGTGTGATTTGAGCGCC
ACGGCATTGAGCCTCCTGGATCAAACTCTTGGTCCTGTTCACAAGCAGCG
ATTGGTAACATTTGTGTGTGACGTGGTCGAACAGGACTTCCCTCACGATG
TGGTGCTTCCGGGAAGCATGGATATTGTGCTGATGACGTTTATGCTTTCC
GCCGTTGGTACACGGGAGGCGCATCACGCTGTTTTCCAACGGTCTCATGC
CGTGCTCCGCCCTGGAGGCTTACTTTTGTTTCGTGACTACGGATGGTGCG
ACGCCAAGATGCTGCAAGGCCGGAAACGGCTAAATACACAGTTATTCATG
CGTGCTGACGGTACGCTTGCCTATTTCTTTAAGGAGGAAGAGGTGCGGCA
GTTGGCCAAAGCGTCGGGATTTCGGGTGCTGGAATGCAAATATGCAACTG
TGCTATCAAAAAACAGGCGAAAGGGTACGGCCATTCAGCGTGTCTTTTTG
CACGCCAAGCTACAGAGAGATTGGAAGTGA
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protein sequence of NO01G02990.1

>NO01G02990.1-protein ID=NO01G02990.1-protein|Name=NO01G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MSHNLANGAVVKAEGVSHLSTVSPRLLAALPATAKRPIAGAYHDHDFDFE
ELKALVEPTLQRVPLLLSGDRMRPEPTPCEAWDGFFILHARKSSFFKTRR
YLALEFPELLDGMGTSTTTLLELGCGYGSSLAAVLDANSSILCFACDLSA
TALSLLDQTLGPVHKQRLVTFVCDVVEQDFPHDVVLPGSMDIVLMTFMLS
AVGTREAHHAVFQRSHAVLRPGGLLLFRDYGWCDAKMLQGRKRLNTQLFM
RADGTLAYFFKEEEVRQLAKASGFRVLECKYATVLSKNRRKGTAIQRVFL
HAKLQRDWK*
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mRNA from alignment at chr1:788258..789187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02990.1 ID=NO01G02990.1|Name=NO01G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=930bp|location=Sequence derived from alignment at chr1:788258..789187- (Nannochloropsis oceanica)
ATGTCTCATAACCTGGCAAATGGTGCGGTCGTCAAGGCTGAAGGAGTCTC
ACACCTGTCTACAGTGTCTCCAAGACTATTAGCAGCCCTTCCCGCCACAG
CTAAGAGACCAATCGCAGGCGCTTATCACGATCATGACTTTGACTTTGAA
GAGCTCAAAGCCTTAGTCGAGCCGACCCTTCAGAGAGTTCCTCTACTACT
TTCAGGAGACCGAATGCGGCCAGAACCCACGCCTTGCGAGGCCTGGGACG
GGTTTTTTATTCTTCATGCCAGGAAATCTAGTTTTTTCAAGACCAGGCGA
TACTTGGCATTGGAGTTCCCAGAGCTACTCGATGGCATGGGTACGTCCAC
CACGACTCTGCTAGAACTCGGATGTGGGTATGGCTCATCTCTTGCGGCTG
TATTGGATGCAAACTCATCCATTCTTTGCTTTGCGTGTGATTTGAGCGCC
ACGGCATTGAGCCTCCTGGATCAAACTCTTGGTCCTGTTCACAAGCAGCG
ATTGGTAACATTTGTGTGTGACGTGGTCGAACAGGACTTCCCTCACGATG
TGGTGCTTCCGGGAAGCATGGATATTGTGCTGATGACGTTTATGCTTTCC
GCCGTTGGTACACGGGAGGCGCATCACGCTGTTTTCCAACGGTCTCATGC
CGTGCTCCGCCCTGGAGGCTTACTTTTGTTTCGTGACTACGGATGGTGCG
ACGCCAAGATGCTGCAAGGCCGGAAACGGCTAAATACACAGTTATTCATG
CGTGCTGACGGTACGCTTGCCTATTTCTTTAAGGAGGAAGAGGTGCGGCA
GTTGGCCAAAGCGTCGGGATTTCGGGTGCTGGAATGCAAATATGCAACTG
TGCTATCAAAAAACAGGCGAAAGGGTACGGCCATTCAGCGTGTCTTTTTG
CACGCCAAGCTACAGAGAGATTGGAAGTGA
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Coding sequence (CDS) from alignment at chr1:788258..789187-

>NO01G02990.1 ID=NO01G02990.1|Name=NO01G02990.1|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr1:788258..789187- (Nannochloropsis oceanica)
ATGTCTCATAACCTGGCAAATGGTGCGGTCGTCAAGGCTGAAGGAGTCTC
ACACCTGTCTACAGTGTCTCCAAGACTATTAGCAGCCCTTCCCGCCACAG
CTAAGAGACCAATCGCAGGCGCTTATCACGATCATGACTTTGACTTTGAA
GAGCTCAAAGCCTTAGTCGAGCCGACCCTTCAGAGAGTTCCTCTACTACT
TTCAGGAGACCGAATGCGGCCAGAACCCACGCCTTGCGAGGCCTGGGACG
GGTTTTTTATTCTTCATGCCAGGAAATCTAGTTTTTTCAAGACCAGGCGA
TACTTGGCATTGGAGTTCCCAGAGCTACTCGATGGCATGGGTACGTCCAC
CACGACTCTGCTAGAACTCGGATGTGGGTATGGCTCATCTCTTGCGGCTG
TATTGGATGCAAACTCATCCATTCTTTGCTTTGCGTGTGATTTGAGCGCC
ACGGCATTGAGCCTCCTGGATCAAACTCTTGGTCCTGTTCACAAGCAGCG
ATTGGTAACATTTGTGTGTGACGTGGTCGAACAGGACTTCCCTCACGATG
TGGTGCTTCCGGGAAGCATGGATATTGTGCTGATGACGTTTATGCTTTCC
GCCGTTGGTACACGGGAGGCGCATCACGCTGTTTTCCAACGGTCTCATGC
CGTGCTCCGCCCTGGAGGCTTACTTTTGTTTCGTGACTACGGATGGTGCG
ACGCCAAGATGCTGCAAGGCCGGAAACGGCTAAATACACAGTTATTCATG
CGTGCTGACGGTACGCTTGCCTATTTCTTTAAGGAGGAAGAGGTGCGGCA
GTTGGCCAAAGCGTCGGGATTTCGGGTGCTGGAATGCAAATATGCAACTG
TGCTATCAAAAAACAGGCGAAAGGGTACGGCCATTCAGCGTGTCTTTTTG
CACGCCAAGCTACAGAGAGATTGGAAGTGA
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Synonyms
Publications