NO01G02780, NO01G02780 (gene) Nannochloropsis oceanica

Overview
NameNO01G02780
Unique NameNO01G02780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3366
Alignment locationchr1:722152..725517 +

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Properties
Property NameValue
DescriptionHistone RNA hairpin-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:722152..725517 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003729mRNA binding
GO:0003723RNA binding
GO:0003729mRNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR026502SLBP1/SLBP2
IPR029344SLBP_RNA_bind
Homology
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: EWM29107.1 (hypothetical protein Naga_100007g112 [Nannochloropsis gaditana])

HSP 1 Score: 178.3 bits (451), Expect = 4.000e-41
Identity = 118/233 (50.64%), Postives = 142/233 (60.94%), Query Frame = 0 
Query:    8 RLASKRVRAEVEEGQA--PKPRLPSCLVGATPEINSSVLQARGNRHAAGGTGALTVAVLGE-ETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKETMIGTSHFSFS-SSPSS--SNDLPQSGGPSYAAVVKTPGSSSRPHSHSHDTPNRGDSGGGMHVAEVHDDDSSDGLDGQEIIITQEGGPGSTGGKGRDKK 235
            R  SKR R E ++ ++   KPRLPSCL+G TPE+NS+ L+ R N      T    V+  GE ETDPHRLRQRQKQ+DYGKNTLGYDRY +++PKE RRR DP+TPDIHARISTKRFNGLVRAWRRRLH+FDP  T+I  S  S S +SPS+  S+ L     P  A   +TP   S   S               H +   +DD          I TQ+GG GS G K  DK+
Sbjct:   36 RPTSKRFRYEADDCRSTKTKPRLPSCLIGTTPEVNSTALRDRRNTI----TPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGETPSPFSEQTSEQKGL-------APTHASNGKEDD----------INTQQGGAGSPGVKDNDKR 247
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BLAST of NO01G02780 vs. NCBI_GenBank
Match: XP_009032259.1 (hypothetical protein AURANDRAFT_17941, partial [Aureococcus anophagefferens] >EGB12594.1 hypothetical protein AURANDRAFT_17941, partial [Aureococcus anophagefferens])

HSP 1 Score: 107.8 bits (268), Expect = 6.600e-20
Identity = 46/70 (65.71%), Postives = 60/70 (85.71%), Query Frame = 0 
Query:   67 ETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDP 137
            ETD  RL QR+K++ YGKNTLGYDRYT+LVPKE+R R DP+TPD+  + S ++F+G+V+AWRRRLHE+DP
Sbjct:    1 ETDARRLSQRRKEITYGKNTLGYDRYTRLVPKEKRSRQDPRTPDVTGKYSKRQFDGIVKAWRRRLHEWDP 70
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: PNW82626.1 (hypothetical protein CHLRE_06g286750v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 104.0 bits (258), Expect = 9.500e-19
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 0 
Query:   67 ETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFD 136
            + DPHRL QRQKQ+D+GKNT+GY RY QLVP+ +RRR DP TPDI+A IS +RF+G V  WRR LH++D
Sbjct:   96 DLDPHRLAQRQKQIDFGKNTVGYQRYLQLVPRNKRRRTDPATPDINANISKRRFDGQVLVWRRALHKYD 164
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: XP_011400756.1 (Oocyte-specific histone RNA stem-loop-binding protein 2 [Auxenochlorella protothecoides] >KFM27769.1 Oocyte-specific histone RNA stem-loop-binding protein 2 [Auxenochlorella protothecoides])

HSP 1 Score: 102.8 bits (255), Expect = 2.100e-18
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 0 
Query:   62 AVLGEETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPK-ERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKETMIGTSH---------FSFSSSPSSSNDLPQSGGPSYAA 169
            AVL  ETDPHRL QRQKQVD+GKNTLGY RY + +P+ +RRR  DP TPD+H   S + F+G ++ WRR+LHE+DP     G +           S  ++  +  + P  GG +  A
Sbjct:   26 AVLEHETDPHRLAQRQKQVDFGKNTLGYQRYREAIPRSQRRRNKDPSTPDVHKACSKRAFDGQIKKWRRQLHEWDPPTQEAGAADDVALATGAVMSLEAAGPAGREEPAPGGDAVRA 142
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: CBJ29742.1 (Histone hairpin binding protein [Ectocarpus siliculosus])

HSP 1 Score: 101.3 bits (251), Expect = 6.200e-18
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 0 
Query:   28 LPSCLVGATPEINSSVLQARGNRHAAGGTGALTVAVLGEETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFD 136
            LP  L+G  P+  +            GG G         E DPHR+ QRQKQ+D+GKNT GYDRY   VP+ +R R DPKTP+   ++S +R++G +R+WRR+LHE+D
Sbjct:  889 LPRHLLGKKPDFEAE----------GGGQGEALKFASDREEDPHRIAQRQKQIDFGKNTSGYDRYLAAVPRNKRSRGDPKTPNKEKKMSKRRWDGQIRSWRRQLHEYD 986
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BLAST of NO01G02780 vs. NCBI_GenBank
Match: GAY01582.1 (Hypothetical protein PINS_009428 [Pythium insidiosum])

HSP 1 Score: 100.5 bits (249), Expect = 1.100e-17
Identity = 44/72 (61.11%), Postives = 54/72 (75.00%), Query Frame = 0 
Query:   67 ETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKE 139
            ETD HRL QRQKQ+DYGKNTLGYDRY   VP+ +RR+ DP TPD   ++S K F+ +VR WR+ LH +DP E
Sbjct:  293 ETDEHRLAQRQKQIDYGKNTLGYDRYCAQVPRHKRRKGDPMTPDKTLKVSKKGFDAMVRRWRQALHRYDPPE 364
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: XP_001695365.1 (histone gene transcript 5' hairpin-binding protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 100.1 bits (248), Expect = 1.400e-17
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = 0 
Query:   66 EETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPK-ETMIGTSHFSFSSSPSSSNDLPQSGGPSYAAVVKTPGSSSR 179
            ++ D HRL QRQKQ+DYGKNTLGY RY QL+PK++R++ DP+TPD+H   S + F GL++ WRR+LH++D   +   G       +  +    +   G  + +AV  +P +SSR
Sbjct:   51 KDLDDHRLAQRQKQIDYGKNTLGYQRYLQLIPKDKRQKGDPQTPDMHLNNSKRAFEGLIKVWRRQLHKYDQDGDEDAGPGAVLSYAERARLASINSEGDVAVSAVASSPTNSSR 164
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: OWZ19640.1 (hypothetical protein PHMEG_0006067 [Phytophthora megakarya])

HSP 1 Score: 100.1 bits (248), Expect = 1.400e-17
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0 
Query:   66 EETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKE 139
            +ETDPHRL QRQKQ+DYGKNT+GYDRY   VP+ +RR   PKTPD    +  K F+G+VR WR+ LH++DP E
Sbjct:   64 KETDPHRLAQRQKQIDYGKNTIGYDRYCAQVPRHQRRSYHPKTPDKTKSVGKKVFDGMVRKWRQALHKYDPPE 136
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: PNW82627.1 (hypothetical protein CHLRE_06g286800v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 100.1 bits (248), Expect = 1.400e-17
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = 0 
Query:   66 EETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPK-ETMIGTSHFSFSSSPSSSNDLPQSGGPSYAAVVKTPGSSSR 179
            ++ D HRL QRQKQ+DYGKNTLGY RY QL+PK++R++ DP+TPD+H   S + F GL++ WRR+LH++D   +   G       +  +    +   G  + +AV  +P +SSR
Sbjct:   47 KDLDDHRLAQRQKQIDYGKNTLGYQRYLQLIPKDKRQKGDPQTPDMHLNNSKRAFEGLIKVWRRQLHKYDQDGDEDAGPGAVLSYAERARLASINSEGDVAVSAVASSPTNSSR 160
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: XP_001416355.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO94648.1 predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 99.0 bits (245), Expect = 3.100e-17
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 0 
Query:   46 ARGNRHAAGGTGALTVAVLGEETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDP 137
            A G+     G  A T     EETDPH+LRQRQ+Q+DYGKNTLGY RY +LV K  RR +D  TP+I A +S + F+G VR WRR LH +DP
Sbjct:  103 AAGDARRGSGDDATT----REETDPHKLRQRQRQIDYGKNTLGYARYRELVAKSARRSSDAWTPNIRAGMSKRAFDGAVRKWRRLLHAYDP 189
The following BLAST results are available for this feature:
BLAST of NO01G02780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29107.14.000e-4150.64hypothetical protein Naga_100007g112 [Nannochlorop... [more]
XP_009032259.16.600e-2065.71hypothetical protein AURANDRAFT_17941, partial [Au... [more]
PNW82626.19.500e-1965.22hypothetical protein CHLRE_06g286750v5 [Chlamydomo... [more]
XP_011400756.12.100e-1845.30Oocyte-specific histone RNA stem-loop-binding prot... [more]
CBJ29742.16.200e-1844.44Histone hairpin binding protein [Ectocarpus silicu... [more]
GAY01582.11.100e-1761.11Hypothetical protein PINS_009428 [Pythium insidios... [more]
XP_001695365.11.400e-1742.98histone gene transcript 5' hairpin-binding protein... [more]
OWZ19640.11.400e-1760.27hypothetical protein PHMEG_0006067 [Phytophthora m... [more]
PNW82627.11.400e-1742.98hypothetical protein CHLRE_06g286800v5 [Chlamydomo... [more]
XP_001416355.13.100e-1754.95predicted protein [Ostreococcus lucimarinus CCE990... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008050NSK008050Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02780.1NO01G02780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537332gene_271Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g112gene1419Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02780.1NO01G02780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02780 ID=NO01G02780|Name=NO01G02780|organism=Nannochloropsis oceanica|type=gene|length=3366bp
ACAGGATAAAAAGACAAGGCATCCACCTATAGCCCCAGCCAAAGCCAACG
TCAGCCTCCACCCCATGGACACGGAACTCCCGGCGgtaagtccccgcctt
ttttttaccctctccacctgctacctccctcctcaccttcttccctccct
tccgtccccccgtcccaaaagCGCTTGGCAAGCAAGCGCGTGCGTGCCGA
AGTCGAGGAGGGCCAAGCGCCCAAGCCCCGCCTACCCAGTTGCCTTGTTG
GCGCCACCCCTGAGATAAATAGCAGTGTCCTCCAAGCCCGCGGCAATAGG
CATGCGGCAGGAGGGACGGGAGCGCTGACCGTGGCGGTGCTGGGGGAAGA
AACGGACCCGCACCGACTCCGGCAGCGCCAAAAGCAGGTGGACTACGGCA
AAAATACGTTGGGCTATGACCGGTACACGCAGCTGGTGCCAAAGGAACGT
CGGCGTCGCGCCGACCCAAAGACACCCGACATCCACGCTCGTATCAGCAC
CAAGCGGTTTAATGGCCTGGTCCGGGCCTGGCGCCGGCGACTCCATGAAT
TCGACCCAAAAGAAACCATGATTGGTACTTCCCACTTCTCATTCTCCTCT
TCTCCCTCTAGTAGCAATGATCTTCCACAATCTGGCGGCCCTTCCTACGC
TGCGGTGGTCAAGACGCCCGGGTCATCCTCCCGCCCTCACAGTCACAGCC
ACGACACTCCCAACCGTGGTGATAGCGGTGGCGGCATGCATGTGGCGGAA
GTCCACGACGACGACAGCAGCGATGGGCTTGACGGACAGGAGATTATCAT
TACACAGGAGGGCGGACCGGGCAGTACCGGTGGCAAGGGCCGCGACAAAA
AGAAGTCCCGGATGAGTCCCTTTGATCGGCCGGACGCAGGCTCGGCGACA
GAGGAGGAGGTGGCTGGTGGTTGTGTGGGGAGCGACTTTCCTGCACTTGT
GTCCGGCGCAGCTGTAGCTAGTGACGGAGATCAGGTAGCAAGGAGATGGG
ATGATGGGGAGGAGGGAGGGGAGGCTGACTTTTACAAGATCAAACGCTCT
ATGGCCATGGGCGCTGGACTAGGTGGCGATTACAACAGTGGCAGCTTCAA
GAATGCTGAATATTGGGGTGACGCCCAGCGGTTGGGAGATGATGAGGAGC
TGTGCTACAGTGACGATGACCTTCTCTAAGCTGCAGGAGGAAAGGGAGGT
AAGGAGGGATGGAGGGAAGATTTTTTTTTCAATTCCAGTTGTTCTGGTCA
TTGATTGACGAGCAAGCGTCCGTACGTGTGGACTGTACCGAGCGAACAGG
AGAGAAGGACGGAAAGGCAAAGGCATTTTGACGGGCCATAGGAGGAAGGG
AAACGAATATCAAGGGCTGAAAAATTCGTGAAGCTGCGACAACTACAGCA
AGGAGAAAGAACTGCCAAACCTCTTCCTTTCTCTTCTACCGCCACCGCGT
CGTGTTGAACAATTTGATATAACGTGGTAAGGGACAGAAAGTACTCTTGT
GTGTGGAGAGGTGGAAGAGAGAAAGAAAAAACTAAGAAACTAAGTATATA
CAATTCTCGTTGTGAGAGACGTCACGAACCGCTTAGGGCAAGGAGTATGG
CATGTGAGAAGATGAAACGCAAGCAAAATGGAGAAAAGAAGAGAAAATTG
AACATGAAAAATAAGGGAGTGCAACCACTGAACAACACATGCTATTCCCC
ACCCCTGACTTTTTTACTCACAAAACATGTTTCAGGCCTAAGCTGACCCG
CAAGTTGTCGGTTTCCAGCAGATTGCCAAAATCGAAAAAAAAAACAATCC
CTGCCCGCACGTCGTAACATTTCATCTTTCGGTTGAACACATCCGTCGCT
GTACATGTCTACCTTTCTGCCTTTTATCTTTATTTCTATGCCTCCTCCTC
TTCCTGCGCTACTTCTTTCTCGCCACTTCGGTGGTCCGTTGCTCCTCTAA
AAAGGCAACTAACAACATCTCGGCCGCCGATCGTGGCGTCAAGGTACCAT
CCGCCAGCTCCTCCTCCATCCTTACCGCCTTCCGTTCCACCGCCCCCGAC
CCCCTCACCTTCCTCACGAGCAAATCTTCCAAACTACTCCACATCCAATG
CCTTCCTTGATCTCTCCTCTTCAACCTCAAAAACCCTGTCTTGTCCAACA
CGTCACTGCACCGACTAACCTCCTCCCAGACCTTCGCAATCTTCTCCCTT
CTTAAAGCTGAACACATTGTCACAGTCGGCGTCCACGGCTCCCATTTCCG
TCGCTGAAAACACAAGGCATGTTTATACTCAGCAGCTGTGTGCTGCGCAG
CTGTGAGTAAGTGGCCATCAGCCTTATTGACCACCACCACGTCGGCCACC
TCCATAATGCCCTTTTTAACGCCCTGCAGCTCATCCCCCCTCCGGGCGGC
ACCAGCAGCAACAGCATATCCGAGGTCTGGTCGATCATGATCTCCGATTG
TCCCAGCCCCACCGTCTCGATGAATACAACATCAAAAGCAGCCGCCTGGC
ATAGCAGCACGACGTCATTCGTATAGCGTGCCACCCCCCCAAGCACCCCA
CTGGTCGGGCAGGCACGTACGAATGCCCGAGGGTCCTTAGACAGCTCGTA
CATCCGTGTCTTGTCCCCCAAGATTGAACCACCGCTGCGAGACGAAGAGG
GATCGACCGCGATGACGGCTACGCGCTGTGCGTGGTCATAGGGGTAGAAG
AAATGAGAGAAGTGAGGCGAATGTGGTACATTTTACTCTCCTCTACTGCA
TCCAGATTTATTGTCTTTCCCCCTCATCCGTAGACGCACCAGTCCCTTGC
TATCCAGCAAATACATGCCCAGGGACTCAATAAAAGTGGACTTGCCGGCA
CCTGGGGGGCCGGCGATGCCAATCCGCAGGGGGCGAGTGCCCTTTCGGAG
GCTGCCGCTGGTGCTGCCGCTGCTGCTGCTGCTGCTTCTGCTGTCGCTGC
TAGATGCCATAGCAGTATTCGAATTCGGCCGCCGATATGTTTTGACCTTT
CGACTGCGCTCGCGGACGACGTGGTCCAATAATGCCTCAGCCTCTTGTCT
ATGGCTTTCCTTGGAGGACTCAATCAGCGTTATGGCCCGGCTCAACGAGA
GACGGTCGCCCTTGAGCACGCCTTCGGCCAGGCCAAGGACCCGCGGGCTT
ATGGCAGAGGTGGAAAATGTACAGGCTGGACTGATGATCCAACCTCGCAT
CGACAAGGATAGTCGCTTGATGGGAGTACTTGCGGCAGTAGCAGCAGCAG
CGCAGCATAGCTGCCGCCGCATGATTAGGTCGATGACAATGTAGGGAGTT
GACAAATCCCACACCTAAAGTTTCGGCGGCGCCAATTTTCCTGTCGAAAA
GTTGAATTTGATTTAA
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protein sequence of NO01G02780.1

>NO01G02780.1-protein ID=NO01G02780.1-protein|Name=NO01G02780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MDTELPARLASKRVRAEVEEGQAPKPRLPSCLVGATPEINSSVLQARGNR
HAAGGTGALTVAVLGEETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKER
RRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKETMIGTSHFSFSS
SPSSSNDLPQSGGPSYAAVVKTPGSSSRPHSHSHDTPNRGDSGGGMHVAE
VHDDDSSDGLDGQEIIITQEGGPGSTGGKGRDKKKSRMSPFDRPDAGSAT
EEEVAGGCVGSDFPALVSGAAVASDGDQVARRWDDGEEGGEADFYKIKRS
MAMGAGLGGDYNSGSFKNAEYWGDAQRLGDDEELCYSDDDLL*
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Synonyms
Publications