NO01G02780.1, NO01G02780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02780.1
Unique NameNO01G02780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3280
Alignment locationchr1:722152..725517 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:722152..725517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G02780.1 vs.
Match: EWM29107.1 (hypothetical protein Naga_100007g112 [Nannochloropsis gaditana])

HSP 1 Score: 176.0 bits (445), Expect = 2.000e-40
Identity = 141/341 (41.35%), Postives = 176/341 (51.61%), Query Frame = 0
Query:    8 RLASKRVRAEVEEGQAPK--PRLPSCLVGATPEINSSVLQARGNRHAAGGTGALTVAVLGE-ETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKETMIGTSHFSFS-SSPSS--SNDLPQSGGPSYAAVVKTPGSSSRPHSHSHDTPNRGDSGGGMHVAEVHDDDSSDGLDGQEIIITQEGGPGSTGGKGRDKKKSRMSPFDRPDAGSATEEEVAGGCVGSDFPALVSGAAVASDGDQVARRWDDGEEGGEADFYKIKRSMAMGAGLGGDYNSGSFKNAEYWGDAQRLGDDEELCYSDDDLL 343
            R  SKR R E ++ ++ K  PRLPSCL+G TPE+NS+ L+ R N      T    V+  GE ETDPHRLRQRQKQ+DYGKNTLGYDRY +++PKE RRR DP+TPDIHARISTKRFNGLVRAWRRRLH+FDP  T+I  S  S S +SPS+  S+ L     P  A   +TP   S   S               H +   +DD          I TQ+GG GS G K  DK+   +      D   AT E  +G  +  D    V G  V    ++    W   E G    +                  +G++++          GD    CYSDDDLL
Sbjct:   36 RPTSKRFRYEADDCRSTKTKPRLPSCLIGTTPEVNSTALRDRRNTI----TPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGETPSPFSEQTSEQKGL-------APTHASNGKEDD----------INTQQGGAGSPGVKDNDKRSRAIR--CSKDGSLATVEFTSG--LRED---AVEGEDVLQSIEET--NWFHDERGANERY------------------AGTYRDT-----GMLPGDPPFACYSDDDLL 323          
The following BLAST results are available for this feature:
BLAST of NO01G02780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29107.12.000e-4041.35hypothetical protein Naga_100007g112 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02780NO01G02780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02780.1NO01G02780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02780.1.cds1NO01G02780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02780.1.cds2NO01G02780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02780.1 ID=NO01G02780.1|Name=NO01G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=3280bp
ACAGGATAAAAAGACAAGGCATCCACCTATAGCCCCAGCCAAAGCCAACG
TCAGCCTCCACCCCATGGACACGGAACTCCCGGCGCGCTTGGCAAGCAAG
CGCGTGCGTGCCGAAGTCGAGGAGGGCCAAGCGCCCAAGCCCCGCCTACC
CAGTTGCCTTGTTGGCGCCACCCCTGAGATAAATAGCAGTGTCCTCCAAG
CCCGCGGCAATAGGCATGCGGCAGGAGGGACGGGAGCGCTGACCGTGGCG
GTGCTGGGGGAAGAAACGGACCCGCACCGACTCCGGCAGCGCCAAAAGCA
GGTGGACTACGGCAAAAATACGTTGGGCTATGACCGGTACACGCAGCTGG
TGCCAAAGGAACGTCGGCGTCGCGCCGACCCAAAGACACCCGACATCCAC
GCTCGTATCAGCACCAAGCGGTTTAATGGCCTGGTCCGGGCCTGGCGCCG
GCGACTCCATGAATTCGACCCAAAAGAAACCATGATTGGTACTTCCCACT
TCTCATTCTCCTCTTCTCCCTCTAGTAGCAATGATCTTCCACAATCTGGC
GGCCCTTCCTACGCTGCGGTGGTCAAGACGCCCGGGTCATCCTCCCGCCC
TCACAGTCACAGCCACGACACTCCCAACCGTGGTGATAGCGGTGGCGGCA
TGCATGTGGCGGAAGTCCACGACGACGACAGCAGCGATGGGCTTGACGGA
CAGGAGATTATCATTACACAGGAGGGCGGACCGGGCAGTACCGGTGGCAA
GGGCCGCGACAAAAAGAAGTCCCGGATGAGTCCCTTTGATCGGCCGGACG
CAGGCTCGGCGACAGAGGAGGAGGTGGCTGGTGGTTGTGTGGGGAGCGAC
TTTCCTGCACTTGTGTCCGGCGCAGCTGTAGCTAGTGACGGAGATCAGGT
AGCAAGGAGATGGGATGATGGGGAGGAGGGAGGGGAGGCTGACTTTTACA
AGATCAAACGCTCTATGGCCATGGGCGCTGGACTAGGTGGCGATTACAAC
AGTGGCAGCTTCAAGAATGCTGAATATTGGGGTGACGCCCAGCGGTTGGG
AGATGATGAGGAGCTGTGCTACAGTGACGATGACCTTCTCTAAGCTGCAG
GAGGAAAGGGAGGTAAGGAGGGATGGAGGGAAGATTTTTTTTTCAATTCC
AGTTGTTCTGGTCATTGATTGACGAGCAAGCGTCCGTACGTGTGGACTGT
ACCGAGCGAACAGGAGAGAAGGACGGAAAGGCAAAGGCATTTTGACGGGC
CATAGGAGGAAGGGAAACGAATATCAAGGGCTGAAAAATTCGTGAAGCTG
CGACAACTACAGCAAGGAGAAAGAACTGCCAAACCTCTTCCTTTCTCTTC
TACCGCCACCGCGTCGTGTTGAACAATTTGATATAACGTGGTAAGGGACA
GAAAGTACTCTTGTGTGTGGAGAGGTGGAAGAGAGAAAGAAAAAACTAAG
AAACTAAGTATATACAATTCTCGTTGTGAGAGACGTCACGAACCGCTTAG
GGCAAGGAGTATGGCATGTGAGAAGATGAAACGCAAGCAAAATGGAGAAA
AGAAGAGAAAATTGAACATGAAAAATAAGGGAGTGCAACCACTGAACAAC
ACATGCTATTCCCCACCCCTGACTTTTTTACTCACAAAACATGTTTCAGG
CCTAAGCTGACCCGCAAGTTGTCGGTTTCCAGCAGATTGCCAAAATCGAA
AAAAAAAACAATCCCTGCCCGCACGTCGTAACATTTCATCTTTCGGTTGA
ACACATCCGTCGCTGTACATGTCTACCTTTCTGCCTTTTATCTTTATTTC
TATGCCTCCTCCTCTTCCTGCGCTACTTCTTTCTCGCCACTTCGGTGGTC
CGTTGCTCCTCTAAAAAGGCAACTAACAACATCTCGGCCGCCGATCGTGG
CGTCAAGGTACCATCCGCCAGCTCCTCCTCCATCCTTACCGCCTTCCGTT
CCACCGCCCCCGACCCCCTCACCTTCCTCACGAGCAAATCTTCCAAACTA
CTCCACATCCAATGCCTTCCTTGATCTCTCCTCTTCAACCTCAAAAACCC
TGTCTTGTCCAACACGTCACTGCACCGACTAACCTCCTCCCAGACCTTCG
CAATCTTCTCCCTTCTTAAAGCTGAACACATTGTCACAGTCGGCGTCCAC
GGCTCCCATTTCCGTCGCTGAAAACACAAGGCATGTTTATACTCAGCAGC
TGTGTGCTGCGCAGCTGTGAGTAAGTGGCCATCAGCCTTATTGACCACCA
CCACGTCGGCCACCTCCATAATGCCCTTTTTAACGCCCTGCAGCTCATCC
CCCCTCCGGGCGGCACCAGCAGCAACAGCATATCCGAGGTCTGGTCGATC
ATGATCTCCGATTGTCCCAGCCCCACCGTCTCGATGAATACAACATCAAA
AGCAGCCGCCTGGCATAGCAGCACGACGTCATTCGTATAGCGTGCCACCC
CCCCAAGCACCCCACTGGTCGGGCAGGCACGTACGAATGCCCGAGGGTCC
TTAGACAGCTCGTACATCCGTGTCTTGTCCCCCAAGATTGAACCACCGCT
GCGAGACGAAGAGGGATCGACCGCGATGACGGCTACGCGCTGTGCGTGGT
CATAGGGGTAGAAGAAATGAGAGAAGTGAGGCGAATGTGGTACATTTTAC
TCTCCTCTACTGCATCCAGATTTATTGTCTTTCCCCCTCATCCGTAGACG
CACCAGTCCCTTGCTATCCAGCAAATACATGCCCAGGGACTCAATAAAAG
TGGACTTGCCGGCACCTGGGGGGCCGGCGATGCCAATCCGCAGGGGGCGA
GTGCCCTTTCGGAGGCTGCCGCTGGTGCTGCCGCTGCTGCTGCTGCTGCT
TCTGCTGTCGCTGCTAGATGCCATAGCAGTATTCGAATTCGGCCGCCGAT
ATGTTTTGACCTTTCGACTGCGCTCGCGGACGACGTGGTCCAATAATGCC
TCAGCCTCTTGTCTATGGCTTTCCTTGGAGGACTCAATCAGCGTTATGGC
CCGGCTCAACGAGAGACGGTCGCCCTTGAGCACGCCTTCGGCCAGGCCAA
GGACCCGCGGGCTTATGGCAGAGGTGGAAAATGTACAGGCTGGACTGATG
ATCCAACCTCGCATCGACAAGGATAGTCGCTTGATGGGAGTACTTGCGGC
AGTAGCAGCAGCAGCGCAGCATAGCTGCCGCCGCATGATTAGGTCGATGA
CAATGTAGGGAGTTGACAAATCCCACACCTAAAGTTTCGGCGGCGCCAAT
TTTCCTGTCGAAAAGTTGAATTTGATTTAA
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protein sequence of NO01G02780.1

>NO01G02780.1-protein ID=NO01G02780.1-protein|Name=NO01G02780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MDTELPARLASKRVRAEVEEGQAPKPRLPSCLVGATPEINSSVLQARGNR
HAAGGTGALTVAVLGEETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKER
RRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKETMIGTSHFSFSS
SPSSSNDLPQSGGPSYAAVVKTPGSSSRPHSHSHDTPNRGDSGGGMHVAE
VHDDDSSDGLDGQEIIITQEGGPGSTGGKGRDKKKSRMSPFDRPDAGSAT
EEEVAGGCVGSDFPALVSGAAVASDGDQVARRWDDGEEGGEADFYKIKRS
MAMGAGLGGDYNSGSFKNAEYWGDAQRLGDDEELCYSDDDLL*
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mRNA from alignment at chr1:722152..725517+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02780.1 ID=NO01G02780.1|Name=NO01G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=3366bp|location=Sequence derived from alignment at chr1:722152..725517+ (Nannochloropsis oceanica)
ACAGGATAAAAAGACAAGGCATCCACCTATAGCCCCAGCCAAAGCCAACG TCAGCCTCCACCCCATGGACACGGAACTCCCGGCGGTAAGTCCCCGCCTT TTTTTTACCCTCTCCACCTGCTACCTCCCTCCTCACCTTCTTCCCTCCCT TCCGTCCCCCCGTCCCAAAAGCGCTTGGCAAGCAAGCGCGTGCGTGCCGA AGTCGAGGAGGGCCAAGCGCCCAAGCCCCGCCTACCCAGTTGCCTTGTTG GCGCCACCCCTGAGATAAATAGCAGTGTCCTCCAAGCCCGCGGCAATAGG CATGCGGCAGGAGGGACGGGAGCGCTGACCGTGGCGGTGCTGGGGGAAGA AACGGACCCGCACCGACTCCGGCAGCGCCAAAAGCAGGTGGACTACGGCA AAAATACGTTGGGCTATGACCGGTACACGCAGCTGGTGCCAAAGGAACGT CGGCGTCGCGCCGACCCAAAGACACCCGACATCCACGCTCGTATCAGCAC CAAGCGGTTTAATGGCCTGGTCCGGGCCTGGCGCCGGCGACTCCATGAAT TCGACCCAAAAGAAACCATGATTGGTACTTCCCACTTCTCATTCTCCTCT TCTCCCTCTAGTAGCAATGATCTTCCACAATCTGGCGGCCCTTCCTACGC TGCGGTGGTCAAGACGCCCGGGTCATCCTCCCGCCCTCACAGTCACAGCC ACGACACTCCCAACCGTGGTGATAGCGGTGGCGGCATGCATGTGGCGGAA GTCCACGACGACGACAGCAGCGATGGGCTTGACGGACAGGAGATTATCAT TACACAGGAGGGCGGACCGGGCAGTACCGGTGGCAAGGGCCGCGACAAAA AGAAGTCCCGGATGAGTCCCTTTGATCGGCCGGACGCAGGCTCGGCGACA GAGGAGGAGGTGGCTGGTGGTTGTGTGGGGAGCGACTTTCCTGCACTTGT GTCCGGCGCAGCTGTAGCTAGTGACGGAGATCAGGTAGCAAGGAGATGGG ATGATGGGGAGGAGGGAGGGGAGGCTGACTTTTACAAGATCAAACGCTCT ATGGCCATGGGCGCTGGACTAGGTGGCGATTACAACAGTGGCAGCTTCAA GAATGCTGAATATTGGGGTGACGCCCAGCGGTTGGGAGATGATGAGGAGC TGTGCTACAGTGACGATGACCTTCTCTAAGCTGCAGGAGGAAAGGGAGGT AAGGAGGGATGGAGGGAAGATTTTTTTTTCAATTCCAGTTGTTCTGGTCA TTGATTGACGAGCAAGCGTCCGTACGTGTGGACTGTACCGAGCGAACAGG AGAGAAGGACGGAAAGGCAAAGGCATTTTGACGGGCCATAGGAGGAAGGG AAACGAATATCAAGGGCTGAAAAATTCGTGAAGCTGCGACAACTACAGCA AGGAGAAAGAACTGCCAAACCTCTTCCTTTCTCTTCTACCGCCACCGCGT CGTGTTGAACAATTTGATATAACGTGGTAAGGGACAGAAAGTACTCTTGT GTGTGGAGAGGTGGAAGAGAGAAAGAAAAAACTAAGAAACTAAGTATATA CAATTCTCGTTGTGAGAGACGTCACGAACCGCTTAGGGCAAGGAGTATGG CATGTGAGAAGATGAAACGCAAGCAAAATGGAGAAAAGAAGAGAAAATTG AACATGAAAAATAAGGGAGTGCAACCACTGAACAACACATGCTATTCCCC ACCCCTGACTTTTTTACTCACAAAACATGTTTCAGGCCTAAGCTGACCCG CAAGTTGTCGGTTTCCAGCAGATTGCCAAAATCGAAAAAAAAAACAATCC CTGCCCGCACGTCGTAACATTTCATCTTTCGGTTGAACACATCCGTCGCT GTACATGTCTACCTTTCTGCCTTTTATCTTTATTTCTATGCCTCCTCCTC TTCCTGCGCTACTTCTTTCTCGCCACTTCGGTGGTCCGTTGCTCCTCTAA AAAGGCAACTAACAACATCTCGGCCGCCGATCGTGGCGTCAAGGTACCAT CCGCCAGCTCCTCCTCCATCCTTACCGCCTTCCGTTCCACCGCCCCCGAC CCCCTCACCTTCCTCACGAGCAAATCTTCCAAACTACTCCACATCCAATG CCTTCCTTGATCTCTCCTCTTCAACCTCAAAAACCCTGTCTTGTCCAACA CGTCACTGCACCGACTAACCTCCTCCCAGACCTTCGCAATCTTCTCCCTT CTTAAAGCTGAACACATTGTCACAGTCGGCGTCCACGGCTCCCATTTCCG TCGCTGAAAACACAAGGCATGTTTATACTCAGCAGCTGTGTGCTGCGCAG CTGTGAGTAAGTGGCCATCAGCCTTATTGACCACCACCACGTCGGCCACC TCCATAATGCCCTTTTTAACGCCCTGCAGCTCATCCCCCCTCCGGGCGGC ACCAGCAGCAACAGCATATCCGAGGTCTGGTCGATCATGATCTCCGATTG TCCCAGCCCCACCGTCTCGATGAATACAACATCAAAAGCAGCCGCCTGGC ATAGCAGCACGACGTCATTCGTATAGCGTGCCACCCCCCCAAGCACCCCA CTGGTCGGGCAGGCACGTACGAATGCCCGAGGGTCCTTAGACAGCTCGTA CATCCGTGTCTTGTCCCCCAAGATTGAACCACCGCTGCGAGACGAAGAGG GATCGACCGCGATGACGGCTACGCGCTGTGCGTGGTCATAGGGGTAGAAG AAATGAGAGAAGTGAGGCGAATGTGGTACATTTTACTCTCCTCTACTGCA TCCAGATTTATTGTCTTTCCCCCTCATCCGTAGACGCACCAGTCCCTTGC TATCCAGCAAATACATGCCCAGGGACTCAATAAAAGTGGACTTGCCGGCA CCTGGGGGGCCGGCGATGCCAATCCGCAGGGGGCGAGTGCCCTTTCGGAG GCTGCCGCTGGTGCTGCCGCTGCTGCTGCTGCTGCTTCTGCTGTCGCTGC TAGATGCCATAGCAGTATTCGAATTCGGCCGCCGATATGTTTTGACCTTT CGACTGCGCTCGCGGACGACGTGGTCCAATAATGCCTCAGCCTCTTGTCT ATGGCTTTCCTTGGAGGACTCAATCAGCGTTATGGCCCGGCTCAACGAGA GACGGTCGCCCTTGAGCACGCCTTCGGCCAGGCCAAGGACCCGCGGGCTT ATGGCAGAGGTGGAAAATGTACAGGCTGGACTGATGATCCAACCTCGCAT CGACAAGGATAGTCGCTTGATGGGAGTACTTGCGGCAGTAGCAGCAGCAG CGCAGCATAGCTGCCGCCGCATGATTAGGTCGATGACAATGTAGGGAGTT GACAAATCCCACACCTAAAGTTTCGGCGGCGCCAATTTTCCTGTCGAAAA GTTGAATTTGATTTAA
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Coding sequence (CDS) from alignment at chr1:722152..725517+

>NO01G02780.1 ID=NO01G02780.1|Name=NO01G02780.1|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr1:722152..725517+ (Nannochloropsis oceanica)
ATGGACACGGAACTCCCGGCGCGCTTGGCAAGCAAGCGCGTGCGTGCCGA
AGTCGAGGAGGGCCAAGCGCCCAAGCCCCGCCTACCCAGTTGCCTTGTTG
GCGCCACCCCTGAGATAAATAGCAGTGTCCTCCAAGCCCGCGGCAATAGG
CATGCGGCAGGAGGGACGGGAGCGCTGACCGTGGCGGTGCTGGGGGAAGA
AACGGACCCGCACCGACTCCGGCAGCGCCAAAAGCAGGTGGACTACGGCA
AAAATACGTTGGGCTATGACCGGTACACGCAGCTGGTGCCAAAGGAACGT
CGGCGTCGCGCCGACCCAAAGACACCCGACATCCACGCTCGTATCAGCAC
CAAGCGGTTTAATGGCCTGGTCCGGGCCTGGCGCCGGCGACTCCATGAAT
TCGACCCAAAAGAAACCATGATTGGTACTTCCCACTTCTCATTCTCCTCT
TCTCCCTCTAGTAGCAATGATCTTCCACAATCTGGCGGCCCTTCCTACGC
TGCGGTGGTCAAGACGCCCGGGTCATCCTCCCGCCCTCACAGTCACAGCC
ACGACACTCCCAACCGTGGTGATAGCGGTGGCGGCATGCATGTGGCGGAA
GTCCACGACGACGACAGCAGCGATGGGCTTGACGGACAGGAGATTATCAT
TACACAGGAGGGCGGACCGGGCAGTACCGGTGGCAAGGGCCGCGACAAAA
AGAAGTCCCGGATGAGTCCCTTTGATCGGCCGGACGCAGGCTCGGCGACA
GAGGAGGAGGTGGCTGGTGGTTGTGTGGGGAGCGACTTTCCTGCACTTGT
GTCCGGCGCAGCTGTAGCTAGTGACGGAGATCAGGTAGCAAGGAGATGGG
ATGATGGGGAGGAGGGAGGGGAGGCTGACTTTTACAAGATCAAACGCTCT
ATGGCCATGGGCGCTGGACTAGGTGGCGATTACAACAGTGGCAGCTTCAA
GAATGCTGAATATTGGGGTGACGCCCAGCGGTTGGGAGATGATGAGGAGC
TGTGCTACAGTGACGATGACCTTCTCTAA
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Synonyms
Publications