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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:722152..725517 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02780.1 vs.
Match: EWM29107.1 (hypothetical protein Naga_100007g112 [Nannochloropsis gaditana]) HSP 1 Score: 176.0 bits (445), Expect = 2.000e-40 Identity = 141/341 (41.35%), Postives = 176/341 (51.61%), Query Frame = 0
Query: 8 RLASKRVRAEVEEGQAPK--PRLPSCLVGATPEINSSVLQARGNRHAAGGTGALTVAVLGE-ETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKETMIGTSHFSFS-SSPSS--SNDLPQSGGPSYAAVVKTPGSSSRPHSHSHDTPNRGDSGGGMHVAEVHDDDSSDGLDGQEIIITQEGGPGSTGGKGRDKKKSRMSPFDRPDAGSATEEEVAGGCVGSDFPALVSGAAVASDGDQVARRWDDGEEGGEADFYKIKRSMAMGAGLGGDYNSGSFKNAEYWGDAQRLGDDEELCYSDDDLL 343
R SKR R E ++ ++ K PRLPSCL+G TPE+NS+ L+ R N T V+ GE ETDPHRLRQRQKQ+DYGKNTLGYDRY +++PKE RRR DP+TPDIHARISTKRFNGLVRAWRRRLH+FDP T+I S S S +SPS+ S+ L P A +TP S S H + +DD I TQ+GG GS G K DK+ + D AT E +G + D V G V ++ W E G + +G++++ GD CYSDDDLL
Sbjct: 36 RPTSKRFRYEADDCRSTKTKPRLPSCLIGTTPEVNSTALRDRRNTI----TPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGETPSPFSEQTSEQKGL-------APTHASNGKEDD----------INTQQGGAGSPGVKDNDKRSRAIR--CSKDGSLATVEFTSG--LRED---AVEGEDVLQSIEET--NWFHDERGANERY------------------AGTYRDT-----GMLPGDPPFACYSDDDLL 323
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02780.1 ID=NO01G02780.1|Name=NO01G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=3280bp ACAGGATAAAAAGACAAGGCATCCACCTATAGCCCCAGCCAAAGCCAACG TCAGCCTCCACCCCATGGACACGGAACTCCCGGCGCGCTTGGCAAGCAAG CGCGTGCGTGCCGAAGTCGAGGAGGGCCAAGCGCCCAAGCCCCGCCTACC CAGTTGCCTTGTTGGCGCCACCCCTGAGATAAATAGCAGTGTCCTCCAAG CCCGCGGCAATAGGCATGCGGCAGGAGGGACGGGAGCGCTGACCGTGGCG GTGCTGGGGGAAGAAACGGACCCGCACCGACTCCGGCAGCGCCAAAAGCA GGTGGACTACGGCAAAAATACGTTGGGCTATGACCGGTACACGCAGCTGG TGCCAAAGGAACGTCGGCGTCGCGCCGACCCAAAGACACCCGACATCCAC GCTCGTATCAGCACCAAGCGGTTTAATGGCCTGGTCCGGGCCTGGCGCCG GCGACTCCATGAATTCGACCCAAAAGAAACCATGATTGGTACTTCCCACT TCTCATTCTCCTCTTCTCCCTCTAGTAGCAATGATCTTCCACAATCTGGC GGCCCTTCCTACGCTGCGGTGGTCAAGACGCCCGGGTCATCCTCCCGCCC TCACAGTCACAGCCACGACACTCCCAACCGTGGTGATAGCGGTGGCGGCA TGCATGTGGCGGAAGTCCACGACGACGACAGCAGCGATGGGCTTGACGGA CAGGAGATTATCATTACACAGGAGGGCGGACCGGGCAGTACCGGTGGCAA GGGCCGCGACAAAAAGAAGTCCCGGATGAGTCCCTTTGATCGGCCGGACG CAGGCTCGGCGACAGAGGAGGAGGTGGCTGGTGGTTGTGTGGGGAGCGAC TTTCCTGCACTTGTGTCCGGCGCAGCTGTAGCTAGTGACGGAGATCAGGT AGCAAGGAGATGGGATGATGGGGAGGAGGGAGGGGAGGCTGACTTTTACA AGATCAAACGCTCTATGGCCATGGGCGCTGGACTAGGTGGCGATTACAAC AGTGGCAGCTTCAAGAATGCTGAATATTGGGGTGACGCCCAGCGGTTGGG AGATGATGAGGAGCTGTGCTACAGTGACGATGACCTTCTCTAAGCTGCAG GAGGAAAGGGAGGTAAGGAGGGATGGAGGGAAGATTTTTTTTTCAATTCC AGTTGTTCTGGTCATTGATTGACGAGCAAGCGTCCGTACGTGTGGACTGT ACCGAGCGAACAGGAGAGAAGGACGGAAAGGCAAAGGCATTTTGACGGGC CATAGGAGGAAGGGAAACGAATATCAAGGGCTGAAAAATTCGTGAAGCTG CGACAACTACAGCAAGGAGAAAGAACTGCCAAACCTCTTCCTTTCTCTTC TACCGCCACCGCGTCGTGTTGAACAATTTGATATAACGTGGTAAGGGACA GAAAGTACTCTTGTGTGTGGAGAGGTGGAAGAGAGAAAGAAAAAACTAAG AAACTAAGTATATACAATTCTCGTTGTGAGAGACGTCACGAACCGCTTAG GGCAAGGAGTATGGCATGTGAGAAGATGAAACGCAAGCAAAATGGAGAAA AGAAGAGAAAATTGAACATGAAAAATAAGGGAGTGCAACCACTGAACAAC ACATGCTATTCCCCACCCCTGACTTTTTTACTCACAAAACATGTTTCAGG CCTAAGCTGACCCGCAAGTTGTCGGTTTCCAGCAGATTGCCAAAATCGAA AAAAAAAACAATCCCTGCCCGCACGTCGTAACATTTCATCTTTCGGTTGA ACACATCCGTCGCTGTACATGTCTACCTTTCTGCCTTTTATCTTTATTTC TATGCCTCCTCCTCTTCCTGCGCTACTTCTTTCTCGCCACTTCGGTGGTC CGTTGCTCCTCTAAAAAGGCAACTAACAACATCTCGGCCGCCGATCGTGG CGTCAAGGTACCATCCGCCAGCTCCTCCTCCATCCTTACCGCCTTCCGTT CCACCGCCCCCGACCCCCTCACCTTCCTCACGAGCAAATCTTCCAAACTA CTCCACATCCAATGCCTTCCTTGATCTCTCCTCTTCAACCTCAAAAACCC TGTCTTGTCCAACACGTCACTGCACCGACTAACCTCCTCCCAGACCTTCG CAATCTTCTCCCTTCTTAAAGCTGAACACATTGTCACAGTCGGCGTCCAC GGCTCCCATTTCCGTCGCTGAAAACACAAGGCATGTTTATACTCAGCAGC TGTGTGCTGCGCAGCTGTGAGTAAGTGGCCATCAGCCTTATTGACCACCA CCACGTCGGCCACCTCCATAATGCCCTTTTTAACGCCCTGCAGCTCATCC CCCCTCCGGGCGGCACCAGCAGCAACAGCATATCCGAGGTCTGGTCGATC ATGATCTCCGATTGTCCCAGCCCCACCGTCTCGATGAATACAACATCAAA AGCAGCCGCCTGGCATAGCAGCACGACGTCATTCGTATAGCGTGCCACCC CCCCAAGCACCCCACTGGTCGGGCAGGCACGTACGAATGCCCGAGGGTCC TTAGACAGCTCGTACATCCGTGTCTTGTCCCCCAAGATTGAACCACCGCT GCGAGACGAAGAGGGATCGACCGCGATGACGGCTACGCGCTGTGCGTGGT CATAGGGGTAGAAGAAATGAGAGAAGTGAGGCGAATGTGGTACATTTTAC TCTCCTCTACTGCATCCAGATTTATTGTCTTTCCCCCTCATCCGTAGACG CACCAGTCCCTTGCTATCCAGCAAATACATGCCCAGGGACTCAATAAAAG TGGACTTGCCGGCACCTGGGGGGCCGGCGATGCCAATCCGCAGGGGGCGA GTGCCCTTTCGGAGGCTGCCGCTGGTGCTGCCGCTGCTGCTGCTGCTGCT TCTGCTGTCGCTGCTAGATGCCATAGCAGTATTCGAATTCGGCCGCCGAT ATGTTTTGACCTTTCGACTGCGCTCGCGGACGACGTGGTCCAATAATGCC TCAGCCTCTTGTCTATGGCTTTCCTTGGAGGACTCAATCAGCGTTATGGC CCGGCTCAACGAGAGACGGTCGCCCTTGAGCACGCCTTCGGCCAGGCCAA GGACCCGCGGGCTTATGGCAGAGGTGGAAAATGTACAGGCTGGACTGATG ATCCAACCTCGCATCGACAAGGATAGTCGCTTGATGGGAGTACTTGCGGC AGTAGCAGCAGCAGCGCAGCATAGCTGCCGCCGCATGATTAGGTCGATGA CAATGTAGGGAGTTGACAAATCCCACACCTAAAGTTTCGGCGGCGCCAAT TTTCCTGTCGAAAAGTTGAATTTGATTTAA back to topprotein sequence of NO01G02780.1 >NO01G02780.1-protein ID=NO01G02780.1-protein|Name=NO01G02780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp MDTELPARLASKRVRAEVEEGQAPKPRLPSCLVGATPEINSSVLQARGNR HAAGGTGALTVAVLGEETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKER RRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKETMIGTSHFSFSS SPSSSNDLPQSGGPSYAAVVKTPGSSSRPHSHSHDTPNRGDSGGGMHVAE VHDDDSSDGLDGQEIIITQEGGPGSTGGKGRDKKKSRMSPFDRPDAGSAT EEEVAGGCVGSDFPALVSGAAVASDGDQVARRWDDGEEGGEADFYKIKRS MAMGAGLGGDYNSGSFKNAEYWGDAQRLGDDEELCYSDDDLL* back to topmRNA from alignment at chr1:722152..725517+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02780.1 ID=NO01G02780.1|Name=NO01G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=3366bp|location=Sequence derived from alignment at chr1:722152..725517+ (Nannochloropsis oceanica) ACAGGATAAAAAGACAAGGCATCCACCTATAGCCCCAGCCAAAGCCAACG
TCAGCCTCCACCCCATGGACACGGAACTCCCGGCGGTAAGTCCCCGCCTT
TTTTTTACCCTCTCCACCTGCTACCTCCCTCCTCACCTTCTTCCCTCCCT
TCCGTCCCCCCGTCCCAAAAGCGCTTGGCAAGCAAGCGCGTGCGTGCCGA
AGTCGAGGAGGGCCAAGCGCCCAAGCCCCGCCTACCCAGTTGCCTTGTTG
GCGCCACCCCTGAGATAAATAGCAGTGTCCTCCAAGCCCGCGGCAATAGG
CATGCGGCAGGAGGGACGGGAGCGCTGACCGTGGCGGTGCTGGGGGAAGA
AACGGACCCGCACCGACTCCGGCAGCGCCAAAAGCAGGTGGACTACGGCA
AAAATACGTTGGGCTATGACCGGTACACGCAGCTGGTGCCAAAGGAACGT
CGGCGTCGCGCCGACCCAAAGACACCCGACATCCACGCTCGTATCAGCAC
CAAGCGGTTTAATGGCCTGGTCCGGGCCTGGCGCCGGCGACTCCATGAAT
TCGACCCAAAAGAAACCATGATTGGTACTTCCCACTTCTCATTCTCCTCT
TCTCCCTCTAGTAGCAATGATCTTCCACAATCTGGCGGCCCTTCCTACGC
TGCGGTGGTCAAGACGCCCGGGTCATCCTCCCGCCCTCACAGTCACAGCC
ACGACACTCCCAACCGTGGTGATAGCGGTGGCGGCATGCATGTGGCGGAA
GTCCACGACGACGACAGCAGCGATGGGCTTGACGGACAGGAGATTATCAT
TACACAGGAGGGCGGACCGGGCAGTACCGGTGGCAAGGGCCGCGACAAAA
AGAAGTCCCGGATGAGTCCCTTTGATCGGCCGGACGCAGGCTCGGCGACA
GAGGAGGAGGTGGCTGGTGGTTGTGTGGGGAGCGACTTTCCTGCACTTGT
GTCCGGCGCAGCTGTAGCTAGTGACGGAGATCAGGTAGCAAGGAGATGGG
ATGATGGGGAGGAGGGAGGGGAGGCTGACTTTTACAAGATCAAACGCTCT
ATGGCCATGGGCGCTGGACTAGGTGGCGATTACAACAGTGGCAGCTTCAA
GAATGCTGAATATTGGGGTGACGCCCAGCGGTTGGGAGATGATGAGGAGC
TGTGCTACAGTGACGATGACCTTCTCTAAGCTGCAGGAGGAAAGGGAGGT
AAGGAGGGATGGAGGGAAGATTTTTTTTTCAATTCCAGTTGTTCTGGTCA
TTGATTGACGAGCAAGCGTCCGTACGTGTGGACTGTACCGAGCGAACAGG
AGAGAAGGACGGAAAGGCAAAGGCATTTTGACGGGCCATAGGAGGAAGGG
AAACGAATATCAAGGGCTGAAAAATTCGTGAAGCTGCGACAACTACAGCA
AGGAGAAAGAACTGCCAAACCTCTTCCTTTCTCTTCTACCGCCACCGCGT
CGTGTTGAACAATTTGATATAACGTGGTAAGGGACAGAAAGTACTCTTGT
GTGTGGAGAGGTGGAAGAGAGAAAGAAAAAACTAAGAAACTAAGTATATA
CAATTCTCGTTGTGAGAGACGTCACGAACCGCTTAGGGCAAGGAGTATGG
CATGTGAGAAGATGAAACGCAAGCAAAATGGAGAAAAGAAGAGAAAATTG
AACATGAAAAATAAGGGAGTGCAACCACTGAACAACACATGCTATTCCCC
ACCCCTGACTTTTTTACTCACAAAACATGTTTCAGGCCTAAGCTGACCCG
CAAGTTGTCGGTTTCCAGCAGATTGCCAAAATCGAAAAAAAAAACAATCC
CTGCCCGCACGTCGTAACATTTCATCTTTCGGTTGAACACATCCGTCGCT
GTACATGTCTACCTTTCTGCCTTTTATCTTTATTTCTATGCCTCCTCCTC
TTCCTGCGCTACTTCTTTCTCGCCACTTCGGTGGTCCGTTGCTCCTCTAA
AAAGGCAACTAACAACATCTCGGCCGCCGATCGTGGCGTCAAGGTACCAT
CCGCCAGCTCCTCCTCCATCCTTACCGCCTTCCGTTCCACCGCCCCCGAC
CCCCTCACCTTCCTCACGAGCAAATCTTCCAAACTACTCCACATCCAATG
CCTTCCTTGATCTCTCCTCTTCAACCTCAAAAACCCTGTCTTGTCCAACA
CGTCACTGCACCGACTAACCTCCTCCCAGACCTTCGCAATCTTCTCCCTT
CTTAAAGCTGAACACATTGTCACAGTCGGCGTCCACGGCTCCCATTTCCG
TCGCTGAAAACACAAGGCATGTTTATACTCAGCAGCTGTGTGCTGCGCAG
CTGTGAGTAAGTGGCCATCAGCCTTATTGACCACCACCACGTCGGCCACC
TCCATAATGCCCTTTTTAACGCCCTGCAGCTCATCCCCCCTCCGGGCGGC
ACCAGCAGCAACAGCATATCCGAGGTCTGGTCGATCATGATCTCCGATTG
TCCCAGCCCCACCGTCTCGATGAATACAACATCAAAAGCAGCCGCCTGGC
ATAGCAGCACGACGTCATTCGTATAGCGTGCCACCCCCCCAAGCACCCCA
CTGGTCGGGCAGGCACGTACGAATGCCCGAGGGTCCTTAGACAGCTCGTA
CATCCGTGTCTTGTCCCCCAAGATTGAACCACCGCTGCGAGACGAAGAGG
GATCGACCGCGATGACGGCTACGCGCTGTGCGTGGTCATAGGGGTAGAAG
AAATGAGAGAAGTGAGGCGAATGTGGTACATTTTACTCTCCTCTACTGCA
TCCAGATTTATTGTCTTTCCCCCTCATCCGTAGACGCACCAGTCCCTTGC
TATCCAGCAAATACATGCCCAGGGACTCAATAAAAGTGGACTTGCCGGCA
CCTGGGGGGCCGGCGATGCCAATCCGCAGGGGGCGAGTGCCCTTTCGGAG
GCTGCCGCTGGTGCTGCCGCTGCTGCTGCTGCTGCTTCTGCTGTCGCTGC
TAGATGCCATAGCAGTATTCGAATTCGGCCGCCGATATGTTTTGACCTTT
CGACTGCGCTCGCGGACGACGTGGTCCAATAATGCCTCAGCCTCTTGTCT
ATGGCTTTCCTTGGAGGACTCAATCAGCGTTATGGCCCGGCTCAACGAGA
GACGGTCGCCCTTGAGCACGCCTTCGGCCAGGCCAAGGACCCGCGGGCTT
ATGGCAGAGGTGGAAAATGTACAGGCTGGACTGATGATCCAACCTCGCAT
CGACAAGGATAGTCGCTTGATGGGAGTACTTGCGGCAGTAGCAGCAGCAG
CGCAGCATAGCTGCCGCCGCATGATTAGGTCGATGACAATGTAGGGAGTT
GACAAATCCCACACCTAAAGTTTCGGCGGCGCCAATTTTCCTGTCGAAAA
GTTGAATTTGATTTAA back to topCoding sequence (CDS) from alignment at chr1:722152..725517+ >NO01G02780.1 ID=NO01G02780.1|Name=NO01G02780.1|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr1:722152..725517+ (Nannochloropsis oceanica) ATGGACACGGAACTCCCGGCGCGCTTGGCAAGCAAGCGCGTGCGTGCCGA AGTCGAGGAGGGCCAAGCGCCCAAGCCCCGCCTACCCAGTTGCCTTGTTG GCGCCACCCCTGAGATAAATAGCAGTGTCCTCCAAGCCCGCGGCAATAGG CATGCGGCAGGAGGGACGGGAGCGCTGACCGTGGCGGTGCTGGGGGAAGA AACGGACCCGCACCGACTCCGGCAGCGCCAAAAGCAGGTGGACTACGGCA AAAATACGTTGGGCTATGACCGGTACACGCAGCTGGTGCCAAAGGAACGT CGGCGTCGCGCCGACCCAAAGACACCCGACATCCACGCTCGTATCAGCAC CAAGCGGTTTAATGGCCTGGTCCGGGCCTGGCGCCGGCGACTCCATGAAT TCGACCCAAAAGAAACCATGATTGGTACTTCCCACTTCTCATTCTCCTCT TCTCCCTCTAGTAGCAATGATCTTCCACAATCTGGCGGCCCTTCCTACGC TGCGGTGGTCAAGACGCCCGGGTCATCCTCCCGCCCTCACAGTCACAGCC ACGACACTCCCAACCGTGGTGATAGCGGTGGCGGCATGCATGTGGCGGAA GTCCACGACGACGACAGCAGCGATGGGCTTGACGGACAGGAGATTATCAT TACACAGGAGGGCGGACCGGGCAGTACCGGTGGCAAGGGCCGCGACAAAA AGAAGTCCCGGATGAGTCCCTTTGATCGGCCGGACGCAGGCTCGGCGACA GAGGAGGAGGTGGCTGGTGGTTGTGTGGGGAGCGACTTTCCTGCACTTGT GTCCGGCGCAGCTGTAGCTAGTGACGGAGATCAGGTAGCAAGGAGATGGG ATGATGGGGAGGAGGGAGGGGAGGCTGACTTTTACAAGATCAAACGCTCT ATGGCCATGGGCGCTGGACTAGGTGGCGATTACAACAGTGGCAGCTTCAA GAATGCTGAATATTGGGGTGACGCCCAGCGGTTGGGAGATGATGAGGAGC TGTGCTACAGTGACGATGACCTTCTCTAA back to top
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