NO01G02600, NO01G02600 (gene) Nannochloropsis oceanica

Overview
NameNO01G02600
Unique NameNO01G02600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1411
Alignment locationchr1:674323..675733 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:674323..675733 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G02600 vs. NCBI_GenBank
Match: EWM29157.1 (hypothetical protein Naga_100007g60 [Nannochloropsis gaditana])

HSP 1 Score: 290.8 bits (743), Expect = 6.000e-75
Identity = 139/158 (87.97%), Postives = 149/158 (94.30%), Query Frame = 0 
Query:  214 SYGVAGLFKGAAKLTSNSVGKVAGLFQPNKYVGLREVLGLWKVKQKIALPGGEPERCEATLEIRKDGSVVTFFEGHELASEFLFKERQWPRACIIEFEARAFQGPYDREPQLKFYKGYVRRSLMNAGVVRLEGKIYEVQGTFFWRQKKQVGKFRALKR 372
            S+G+A LFKGAAK+TS+SVGKVAGLFQPNKYV LREVLG+WKVKQKI  PGGE ERCEATLEIRKDG+VVTFFEG EL SEFLFKERQWPR+CIIEFEARAFQGPYDREPQ KFYKGYVRRSLMNAG VRLEGKIY+VQGTFFWRQK+QVGKFRA+KR
Sbjct:  192 SHGMADLFKGAAKITSSSVGKVAGLFQPNKYVSLREVLGVWKVKQKITEPGGEVERCEATLEIRKDGTVVTFFEGKELVSEFLFKERQWPRSCIIEFEARAFQGPYDREPQPKFYKGYVRRSLMNAGSVRLEGKIYDVQGTFFWRQKRQVGKFRAVKR 349
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BLAST of NO01G02600 vs. NCBI_GenBank
Match: CBJ31970.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 152.1 bits (383), Expect = 3.300e-33
Identity = 70/153 (45.75%), Postives = 96/153 (62.75%), Query Frame = 0 
Query:  219 GLFKGAAKLTSNSVGKVAGLFQPNKYVGLREVLGLWKVKQKIALPGGEPERCEATLEIRKDGSVVTFFEGHELASEFLFKERQWPRACIIEFEARAFQGPYDREPQLKFYKGYVRRSLMNAGVVRLEGKIYEVQGTFFWRQKKQVGKFRALKR 372
            G+ K   K T  S+  +    QP K VGL E+L  WK++Q +  P G   +C AT+E R+DG+V T F+G E  S+F F+   WPRAC IEFEA+AFQGP+D EP  K YKG   R L++  ++ LEG IY+V G   W+++ + GKF A +R
Sbjct:  249 GVMKSVGKATGKSMKAMVHALQP-KSVGLGEILDTWKIEQVVGKPPGRVTKCAATVEFRRDGTVATSFDGRETVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKVYKGSFSRKLLDPKIIMLEGTIYDVTGKMMWKRRVKSGKFTARRR 400
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BLAST of NO01G02600 vs. NCBI_GenBank
Match: XP_002178252.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49917.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 86.7 bits (213), Expect = 1.700e-13
Identity = 55/153 (35.95%), Postives = 78/153 (50.98%), Query Frame = 0 
Query:  224 AAKLTSNSVGKVAGLFQPNKYVGLREVLGLWKVKQKIAL-PGGEPERCEATLEIRKDGSVVTFFEGHELASEFLFKERQWPRACIIEFEARAFQGPYDREPQLKFYKGYVRRSLMNAGVVRLEGKIYEVQGTFFWR----QKKQVGKFRALKR 372
            A   ++   GK A      K V L E+LGLW++ Q++ L P   P      LE+     VVT  +G  +     F   ++P++  +EF AR F    D +P L FYKGYV R L +  V++++GKIY V+ T  WR    +   VG F A KR
Sbjct:   94 AVTASAQQSGKAAYWAIRPKQVDLNELLGLWRLDQQVILYPNDGPLESSTNLELTPKAVVVT-LDGKPVPFSLTFTPARFPKSAKVEFTARTFIPIEDEQPPLFFYKGYVHRKLADLSVIKIKGKIYRVEST-GWRGQGIKHVIVGTFLARKR 244
The following BLAST results are available for this feature:
BLAST of NO01G02600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM29157.16.000e-7587.97hypothetical protein Naga_100007g60 [Nannochlorops... [more]
CBJ31970.13.300e-3345.75conserved unknown protein [Ectocarpus siliculosus][more]
XP_002178252.11.700e-1335.95predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008105NSK008105Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02600.1NO01G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668318gene_251Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g60gene1461Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02600.1NO01G02600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02600 ID=NO01G02600|Name=NO01G02600|organism=Nannochloropsis oceanica|type=gene|length=1411bp
ATGGAGCGGAAACCCGCAGTGCTCGACATGCTTGAACTGGTGTCTGTGCA
GGCGTGCATAAATACAGAGTCAGGGGgtgagtgttgaagactaggaggag
ggcaaacttcggaacaactacttgaaggggggggggaagaaggggcttct
cgtcataaagtcacatgaatgattggcatgaatgccaatcgttctgagcc
actttttcaaccttcgcttcacgcacgcaacagGTACCACATCCTTTTAC
CGAAGCCGGCGTCTTTGCCAGGACCAGGCATTCTTGATTGCCTCGAGCCT
CCCTACGGCATCAAATCATCTCTATGAGGGGTCGCGTCCTTCTCCTCTTG
CCGTCGTGCTGCTGCCTTATTATGGCCCTAGCCTCCTGCCTCGTATGGGG
ACCCATTCTAGgtacgtggaaatctgtgaggcatggggcatgtcttcaaa
accttagtccttcaagtagatcacgtcgttgtgcttgacatttacaaccc
ctaattctgcaggaaaggcagccgccagggtccctctagctgcaccaagT
ACCTCAGTTTCGTCGGTACCTCATCTCCTTACGCAAGTCAAAGGCGGTGT
TAAGCCAACGGGGAAACCCGCTGGTGGCGGTGCGGCGGGCAAGAGGTTGA
AGACTGGGTCGGGAGCGGCAGGCACGTCCAAGGTCAAGCCACCACCCGTT
GTGCAAATTATCGATGACGATGATGACGACGAGGATGAGGAACAGGATAA
TGAGGAGGAGTGGGATGAGAATGAGGATGAAGATGATGAGAAAGACTATG
ACGACAAGGAGGAAGACTACGAAGAGGAGGAGCAGGACGCTCGATGGGGT
GGACGGGGCAGTGGAAGCAAAAAGCGGCCGAATGACTGGCATTACGCAGA
CAGACGCCGGCGGTTAGCAGCACGGAGAGGATCCTCGTATGGGGTAGCTG
GTTTATTTAAGGGCGCAGCGAAATTGACAAGCAATTCTGTAGGAAAGGTA
GCGGGGCTCTTCCAACCCAACAAATATGTGGGTCTGCGGGAAGTGTTGGG
ATTGTGGAAAGTCAAGCAAAAAATCGCTCTGCCAGGGGGCGAACCTGAAC
GATGCGAGGCCACCTTAGAAATCCGAAAAGATGGCTCAGTTGTCACTTTT
TTTGAGGGACACGAGCTAGCTTCCGAGTTTTTGTTCAAAGAGAGACAGTG
GCCTCGGGCTTGTATTATCGAGTTTGAGGCACGGGCATTCCAGGGTCCAT
ATGACAGGGAGCCTCAGTTGAAATTTTACAAAGGGTACGTGCGACGGAGT
CTGATGAACGCGGGAGTGGTGCGGTTGGAGGGGAAGATTTATGAGGTTCA
GGGGACATTCTTCTGGCGGCAAAAGAAACAGGTGGGTAAATTTAGGGCCC
TCAAGAGATGA
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protein sequence of NO01G02600.1

>NO01G02600.1-protein ID=NO01G02600.1-protein|Name=NO01G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MERKPAVLDMLELVSVQACINTESGGTTSFYRSRRLCQDQAFLIASSLPT
ASNHLYEGSRPSPLAVVLLPYYGPSLLPRMGTHSSTSVSSVPHLLTQVKG
GVKPTGKPAGGGAAGKRLKTGSGAAGTSKVKPPPVVQIIDDDDDDEDEEQ
DNEEEWDENEDEDDEKDYDDKEEDYEEEEQDARWGGRGSGSKKRPNDWHY
ADRRRRLAARRGSSYGVAGLFKGAAKLTSNSVGKVAGLFQPNKYVGLREV
LGLWKVKQKIALPGGEPERCEATLEIRKDGSVVTFFEGHELASEFLFKER
QWPRACIIEFEARAFQGPYDREPQLKFYKGYVRRSLMNAGVVRLEGKIYE
VQGTFFWRQKKQVGKFRALKR*
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Synonyms
Publications