NO01G02600.1, NO01G02600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02600.1
Unique NameNO01G02600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1116
Alignment locationchr1:674323..675733 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:674323..675733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G02600.1 vs.
Match: EWM29157.1 (hypothetical protein Naga_100007g60 [Nannochloropsis gaditana])

HSP 1 Score: 342.8 bits (878), Expect = 1.300e-90
Identity = 193/290 (66.55%), Postives = 226/290 (77.93%), Query Frame = 0
Query:   85 STSVSSVPHLLTQVKGGVKPTGKPAGGGAAGK---RLKTGSGAAGTSKVKPPPVVQIIDDDDDDEDEEQDNEEEWDENEDEDDEKDYDDKEEDYEEEEQDARWGGRGSGSKKRPNDWHYADRRRRLAARRGSSYGVAGLFKGAAKLTSNSVGKVAGLFQPNKYVGLREVLGLWKVKQKIALPGGEPERCEATLEIRKDGSVVTFFEGHELASEFLFKERQWPRACIIEFEARAFQGPYDREPQLKFYKGYVRRSLMNAGVVRLEGKIYEVQGTFFWRQKKQVGKFRALKR 372
            +  ++ V  ++ +V+GG+KP       G+ GK   ++  G+ A      K PP V + DDDDDDE++E    EEW   EDED  ++ ++  E  EE E      GR  GS++R N+WHYADRRRRLAARR +S+G+A LFKGAAK+TS+SVGKVAGLFQPNKYV LREVLG+WKVKQKI  PGGE ERCEATLEIRKDG+VVTFFEG EL SEFLFKERQWPR+CIIEFEARAFQGPYDREPQ KFYKGYVRRSLMNAG VRLEGKIY+VQGTFFWRQK+QVGKFRA+KR
Sbjct:   70 AAGITQVARMVMEVRGGLKPAR-----GSKGKNNGKISNGNNAGTKLGPKAPPPVHVDDDDDDDEEQE----EEWGSEEDEDCMEEEEEFGELAEEREGKYYESGRSGGSRQR-NEWHYADRRRRLAARRRASHGMADLFKGAAKITSSSVGKVAGLFQPNKYVSLREVLGVWKVKQKITEPGGEVERCEATLEIRKDGTVVTFFEGKELVSEFLFKERQWPRSCIIEFEARAFQGPYDREPQPKFYKGYVRRSLMNAGSVRLEGKIYDVQGTFFWRQKRQVGKFRAVKR 349          
The following BLAST results are available for this feature:
BLAST of NO01G02600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29157.11.300e-9066.55hypothetical protein Naga_100007g60 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02600NO01G02600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02600.1NO01G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02600.1.cds1NO01G02600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02600.1.cds2NO01G02600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02600.1.cds3NO01G02600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02600.1 ID=NO01G02600.1|Name=NO01G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp
ATGGAGCGGAAACCCGCAGTGCTCGACATGCTTGAACTGGTGTCTGTGCA
GGCGTGCATAAATACAGAGTCAGGGGGTACCACATCCTTTTACCGAAGCC
GGCGTCTTTGCCAGGACCAGGCATTCTTGATTGCCTCGAGCCTCCCTACG
GCATCAAATCATCTCTATGAGGGGTCGCGTCCTTCTCCTCTTGCCGTCGT
GCTGCTGCCTTATTATGGCCCTAGCCTCCTGCCTCGTATGGGGACCCATT
CTAGTACCTCAGTTTCGTCGGTACCTCATCTCCTTACGCAAGTCAAAGGC
GGTGTTAAGCCAACGGGGAAACCCGCTGGTGGCGGTGCGGCGGGCAAGAG
GTTGAAGACTGGGTCGGGAGCGGCAGGCACGTCCAAGGTCAAGCCACCAC
CCGTTGTGCAAATTATCGATGACGATGATGACGACGAGGATGAGGAACAG
GATAATGAGGAGGAGTGGGATGAGAATGAGGATGAAGATGATGAGAAAGA
CTATGACGACAAGGAGGAAGACTACGAAGAGGAGGAGCAGGACGCTCGAT
GGGGTGGACGGGGCAGTGGAAGCAAAAAGCGGCCGAATGACTGGCATTAC
GCAGACAGACGCCGGCGGTTAGCAGCACGGAGAGGATCCTCGTATGGGGT
AGCTGGTTTATTTAAGGGCGCAGCGAAATTGACAAGCAATTCTGTAGGAA
AGGTAGCGGGGCTCTTCCAACCCAACAAATATGTGGGTCTGCGGGAAGTG
TTGGGATTGTGGAAAGTCAAGCAAAAAATCGCTCTGCCAGGGGGCGAACC
TGAACGATGCGAGGCCACCTTAGAAATCCGAAAAGATGGCTCAGTTGTCA
CTTTTTTTGAGGGACACGAGCTAGCTTCCGAGTTTTTGTTCAAAGAGAGA
CAGTGGCCTCGGGCTTGTATTATCGAGTTTGAGGCACGGGCATTCCAGGG
TCCATATGACAGGGAGCCTCAGTTGAAATTTTACAAAGGGTACGTGCGAC
GGAGTCTGATGAACGCGGGAGTGGTGCGGTTGGAGGGGAAGATTTATGAG
GTTCAGGGGACATTCTTCTGGCGGCAAAAGAAACAGGTGGGTAAATTTAG
GGCCCTCAAGAGATGA
back to top

protein sequence of NO01G02600.1

>NO01G02600.1-protein ID=NO01G02600.1-protein|Name=NO01G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MERKPAVLDMLELVSVQACINTESGGTTSFYRSRRLCQDQAFLIASSLPT
ASNHLYEGSRPSPLAVVLLPYYGPSLLPRMGTHSSTSVSSVPHLLTQVKG
GVKPTGKPAGGGAAGKRLKTGSGAAGTSKVKPPPVVQIIDDDDDDEDEEQ
DNEEEWDENEDEDDEKDYDDKEEDYEEEEQDARWGGRGSGSKKRPNDWHY
ADRRRRLAARRGSSYGVAGLFKGAAKLTSNSVGKVAGLFQPNKYVGLREV
LGLWKVKQKIALPGGEPERCEATLEIRKDGSVVTFFEGHELASEFLFKER
QWPRACIIEFEARAFQGPYDREPQLKFYKGYVRRSLMNAGVVRLEGKIYE
VQGTFFWRQKKQVGKFRALKR*
back to top

mRNA from alignment at chr1:674323..675733+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02600.1 ID=NO01G02600.1|Name=NO01G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1411bp|location=Sequence derived from alignment at chr1:674323..675733+ (Nannochloropsis oceanica)
ATGGAGCGGAAACCCGCAGTGCTCGACATGCTTGAACTGGTGTCTGTGCA GGCGTGCATAAATACAGAGTCAGGGGGTGAGTGTTGAAGACTAGGAGGAG GGCAAACTTCGGAACAACTACTTGAAGGGGGGGGGGAAGAAGGGGCTTCT CGTCATAAAGTCACATGAATGATTGGCATGAATGCCAATCGTTCTGAGCC ACTTTTTCAACCTTCGCTTCACGCACGCAACAGGTACCACATCCTTTTAC CGAAGCCGGCGTCTTTGCCAGGACCAGGCATTCTTGATTGCCTCGAGCCT CCCTACGGCATCAAATCATCTCTATGAGGGGTCGCGTCCTTCTCCTCTTG CCGTCGTGCTGCTGCCTTATTATGGCCCTAGCCTCCTGCCTCGTATGGGG ACCCATTCTAGGTACGTGGAAATCTGTGAGGCATGGGGCATGTCTTCAAA ACCTTAGTCCTTCAAGTAGATCACGTCGTTGTGCTTGACATTTACAACCC CTAATTCTGCAGGAAAGGCAGCCGCCAGGGTCCCTCTAGCTGCACCAAGT ACCTCAGTTTCGTCGGTACCTCATCTCCTTACGCAAGTCAAAGGCGGTGT TAAGCCAACGGGGAAACCCGCTGGTGGCGGTGCGGCGGGCAAGAGGTTGA AGACTGGGTCGGGAGCGGCAGGCACGTCCAAGGTCAAGCCACCACCCGTT GTGCAAATTATCGATGACGATGATGACGACGAGGATGAGGAACAGGATAA TGAGGAGGAGTGGGATGAGAATGAGGATGAAGATGATGAGAAAGACTATG ACGACAAGGAGGAAGACTACGAAGAGGAGGAGCAGGACGCTCGATGGGGT GGACGGGGCAGTGGAAGCAAAAAGCGGCCGAATGACTGGCATTACGCAGA CAGACGCCGGCGGTTAGCAGCACGGAGAGGATCCTCGTATGGGGTAGCTG GTTTATTTAAGGGCGCAGCGAAATTGACAAGCAATTCTGTAGGAAAGGTA GCGGGGCTCTTCCAACCCAACAAATATGTGGGTCTGCGGGAAGTGTTGGG ATTGTGGAAAGTCAAGCAAAAAATCGCTCTGCCAGGGGGCGAACCTGAAC GATGCGAGGCCACCTTAGAAATCCGAAAAGATGGCTCAGTTGTCACTTTT TTTGAGGGACACGAGCTAGCTTCCGAGTTTTTGTTCAAAGAGAGACAGTG GCCTCGGGCTTGTATTATCGAGTTTGAGGCACGGGCATTCCAGGGTCCAT ATGACAGGGAGCCTCAGTTGAAATTTTACAAAGGGTACGTGCGACGGAGT CTGATGAACGCGGGAGTGGTGCGGTTGGAGGGGAAGATTTATGAGGTTCA GGGGACATTCTTCTGGCGGCAAAAGAAACAGGTGGGTAAATTTAGGGCCC TCAAGAGATGA
back to top

Coding sequence (CDS) from alignment at chr1:674323..675733+

>NO01G02600.1 ID=NO01G02600.1|Name=NO01G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr1:674323..675733+ (Nannochloropsis oceanica)
ATGGAGCGGAAACCCGCAGTGCTCGACATGCTTGAACTGGTGTCTGTGCA
GGCGTGCATAAATACAGAGTCAGGGGGTACCACATCCTTTTACCGAAGCC
GGCGTCTTTGCCAGGACCAGGCATTCTTGATTGCCTCGAGCCTCCCTACG
GCATCAAATCATCTCTATGAGGGGTCGCGTCCTTCTCCTCTTGCCGTCGT
GCTGCTGCCTTATTATGGCCCTAGCCTCCTGCCTCGTATGGGGACCCATT
CTAGTACCTCAGTTTCGTCGGTACCTCATCTCCTTACGCAAGTCAAAGGC
GGTGTTAAGCCAACGGGGAAACCCGCTGGTGGCGGTGCGGCGGGCAAGAG
GTTGAAGACTGGGTCGGGAGCGGCAGGCACGTCCAAGGTCAAGCCACCAC
CCGTTGTGCAAATTATCGATGACGATGATGACGACGAGGATGAGGAACAG
GATAATGAGGAGGAGTGGGATGAGAATGAGGATGAAGATGATGAGAAAGA
CTATGACGACAAGGAGGAAGACTACGAAGAGGAGGAGCAGGACGCTCGAT
GGGGTGGACGGGGCAGTGGAAGCAAAAAGCGGCCGAATGACTGGCATTAC
GCAGACAGACGCCGGCGGTTAGCAGCACGGAGAGGATCCTCGTATGGGGT
AGCTGGTTTATTTAAGGGCGCAGCGAAATTGACAAGCAATTCTGTAGGAA
AGGTAGCGGGGCTCTTCCAACCCAACAAATATGTGGGTCTGCGGGAAGTG
TTGGGATTGTGGAAAGTCAAGCAAAAAATCGCTCTGCCAGGGGGCGAACC
TGAACGATGCGAGGCCACCTTAGAAATCCGAAAAGATGGCTCAGTTGTCA
CTTTTTTTGAGGGACACGAGCTAGCTTCCGAGTTTTTGTTCAAAGAGAGA
CAGTGGCCTCGGGCTTGTATTATCGAGTTTGAGGCACGGGCATTCCAGGG
TCCATATGACAGGGAGCCTCAGTTGAAATTTTACAAAGGGTACGTGCGAC
GGAGTCTGATGAACGCGGGAGTGGTGCGGTTGGAGGGGAAGATTTATGAG
GTTCAGGGGACATTCTTCTGGCGGCAAAAGAAACAGGTGGGTAAATTTAG
GGCCCTCAAGAGATGA
back to top
Synonyms
Publications