|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:674323..675733 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02600.1 vs.
Match: EWM29157.1 (hypothetical protein Naga_100007g60 [Nannochloropsis gaditana]) HSP 1 Score: 342.8 bits (878), Expect = 1.300e-90 Identity = 193/290 (66.55%), Postives = 226/290 (77.93%), Query Frame = 0
Query: 85 STSVSSVPHLLTQVKGGVKPTGKPAGGGAAGK---RLKTGSGAAGTSKVKPPPVVQIIDDDDDDEDEEQDNEEEWDENEDEDDEKDYDDKEEDYEEEEQDARWGGRGSGSKKRPNDWHYADRRRRLAARRGSSYGVAGLFKGAAKLTSNSVGKVAGLFQPNKYVGLREVLGLWKVKQKIALPGGEPERCEATLEIRKDGSVVTFFEGHELASEFLFKERQWPRACIIEFEARAFQGPYDREPQLKFYKGYVRRSLMNAGVVRLEGKIYEVQGTFFWRQKKQVGKFRALKR 372
+ ++ V ++ +V+GG+KP G+ GK ++ G+ A K PP V + DDDDDDE++E EEW EDED ++ ++ E EE E GR GS++R N+WHYADRRRRLAARR +S+G+A LFKGAAK+TS+SVGKVAGLFQPNKYV LREVLG+WKVKQKI PGGE ERCEATLEIRKDG+VVTFFEG EL SEFLFKERQWPR+CIIEFEARAFQGPYDREPQ KFYKGYVRRSLMNAG VRLEGKIY+VQGTFFWRQK+QVGKFRA+KR
Sbjct: 70 AAGITQVARMVMEVRGGLKPAR-----GSKGKNNGKISNGNNAGTKLGPKAPPPVHVDDDDDDDEEQE----EEWGSEEDEDCMEEEEEFGELAEEREGKYYESGRSGGSRQR-NEWHYADRRRRLAARRRASHGMADLFKGAAKITSSSVGKVAGLFQPNKYVSLREVLGVWKVKQKITEPGGEVERCEATLEIRKDGTVVTFFEGKELVSEFLFKERQWPRSCIIEFEARAFQGPYDREPQPKFYKGYVRRSLMNAGSVRLEGKIYDVQGTFFWRQKRQVGKFRAVKR 349
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02600.1 ID=NO01G02600.1|Name=NO01G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp ATGGAGCGGAAACCCGCAGTGCTCGACATGCTTGAACTGGTGTCTGTGCA GGCGTGCATAAATACAGAGTCAGGGGGTACCACATCCTTTTACCGAAGCC GGCGTCTTTGCCAGGACCAGGCATTCTTGATTGCCTCGAGCCTCCCTACG GCATCAAATCATCTCTATGAGGGGTCGCGTCCTTCTCCTCTTGCCGTCGT GCTGCTGCCTTATTATGGCCCTAGCCTCCTGCCTCGTATGGGGACCCATT CTAGTACCTCAGTTTCGTCGGTACCTCATCTCCTTACGCAAGTCAAAGGC GGTGTTAAGCCAACGGGGAAACCCGCTGGTGGCGGTGCGGCGGGCAAGAG GTTGAAGACTGGGTCGGGAGCGGCAGGCACGTCCAAGGTCAAGCCACCAC CCGTTGTGCAAATTATCGATGACGATGATGACGACGAGGATGAGGAACAG GATAATGAGGAGGAGTGGGATGAGAATGAGGATGAAGATGATGAGAAAGA CTATGACGACAAGGAGGAAGACTACGAAGAGGAGGAGCAGGACGCTCGAT GGGGTGGACGGGGCAGTGGAAGCAAAAAGCGGCCGAATGACTGGCATTAC GCAGACAGACGCCGGCGGTTAGCAGCACGGAGAGGATCCTCGTATGGGGT AGCTGGTTTATTTAAGGGCGCAGCGAAATTGACAAGCAATTCTGTAGGAA AGGTAGCGGGGCTCTTCCAACCCAACAAATATGTGGGTCTGCGGGAAGTG TTGGGATTGTGGAAAGTCAAGCAAAAAATCGCTCTGCCAGGGGGCGAACC TGAACGATGCGAGGCCACCTTAGAAATCCGAAAAGATGGCTCAGTTGTCA CTTTTTTTGAGGGACACGAGCTAGCTTCCGAGTTTTTGTTCAAAGAGAGA CAGTGGCCTCGGGCTTGTATTATCGAGTTTGAGGCACGGGCATTCCAGGG TCCATATGACAGGGAGCCTCAGTTGAAATTTTACAAAGGGTACGTGCGAC GGAGTCTGATGAACGCGGGAGTGGTGCGGTTGGAGGGGAAGATTTATGAG GTTCAGGGGACATTCTTCTGGCGGCAAAAGAAACAGGTGGGTAAATTTAG GGCCCTCAAGAGATGA back to topprotein sequence of NO01G02600.1 >NO01G02600.1-protein ID=NO01G02600.1-protein|Name=NO01G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp MERKPAVLDMLELVSVQACINTESGGTTSFYRSRRLCQDQAFLIASSLPT ASNHLYEGSRPSPLAVVLLPYYGPSLLPRMGTHSSTSVSSVPHLLTQVKG GVKPTGKPAGGGAAGKRLKTGSGAAGTSKVKPPPVVQIIDDDDDDEDEEQ DNEEEWDENEDEDDEKDYDDKEEDYEEEEQDARWGGRGSGSKKRPNDWHY ADRRRRLAARRGSSYGVAGLFKGAAKLTSNSVGKVAGLFQPNKYVGLREV LGLWKVKQKIALPGGEPERCEATLEIRKDGSVVTFFEGHELASEFLFKER QWPRACIIEFEARAFQGPYDREPQLKFYKGYVRRSLMNAGVVRLEGKIYE VQGTFFWRQKKQVGKFRALKR* back to topmRNA from alignment at chr1:674323..675733+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02600.1 ID=NO01G02600.1|Name=NO01G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1411bp|location=Sequence derived from alignment at chr1:674323..675733+ (Nannochloropsis oceanica) ATGGAGCGGAAACCCGCAGTGCTCGACATGCTTGAACTGGTGTCTGTGCA
GGCGTGCATAAATACAGAGTCAGGGGGTGAGTGTTGAAGACTAGGAGGAG
GGCAAACTTCGGAACAACTACTTGAAGGGGGGGGGGAAGAAGGGGCTTCT
CGTCATAAAGTCACATGAATGATTGGCATGAATGCCAATCGTTCTGAGCC
ACTTTTTCAACCTTCGCTTCACGCACGCAACAGGTACCACATCCTTTTAC
CGAAGCCGGCGTCTTTGCCAGGACCAGGCATTCTTGATTGCCTCGAGCCT
CCCTACGGCATCAAATCATCTCTATGAGGGGTCGCGTCCTTCTCCTCTTG
CCGTCGTGCTGCTGCCTTATTATGGCCCTAGCCTCCTGCCTCGTATGGGG
ACCCATTCTAGGTACGTGGAAATCTGTGAGGCATGGGGCATGTCTTCAAA
ACCTTAGTCCTTCAAGTAGATCACGTCGTTGTGCTTGACATTTACAACCC
CTAATTCTGCAGGAAAGGCAGCCGCCAGGGTCCCTCTAGCTGCACCAAGT
ACCTCAGTTTCGTCGGTACCTCATCTCCTTACGCAAGTCAAAGGCGGTGT
TAAGCCAACGGGGAAACCCGCTGGTGGCGGTGCGGCGGGCAAGAGGTTGA
AGACTGGGTCGGGAGCGGCAGGCACGTCCAAGGTCAAGCCACCACCCGTT
GTGCAAATTATCGATGACGATGATGACGACGAGGATGAGGAACAGGATAA
TGAGGAGGAGTGGGATGAGAATGAGGATGAAGATGATGAGAAAGACTATG
ACGACAAGGAGGAAGACTACGAAGAGGAGGAGCAGGACGCTCGATGGGGT
GGACGGGGCAGTGGAAGCAAAAAGCGGCCGAATGACTGGCATTACGCAGA
CAGACGCCGGCGGTTAGCAGCACGGAGAGGATCCTCGTATGGGGTAGCTG
GTTTATTTAAGGGCGCAGCGAAATTGACAAGCAATTCTGTAGGAAAGGTA
GCGGGGCTCTTCCAACCCAACAAATATGTGGGTCTGCGGGAAGTGTTGGG
ATTGTGGAAAGTCAAGCAAAAAATCGCTCTGCCAGGGGGCGAACCTGAAC
GATGCGAGGCCACCTTAGAAATCCGAAAAGATGGCTCAGTTGTCACTTTT
TTTGAGGGACACGAGCTAGCTTCCGAGTTTTTGTTCAAAGAGAGACAGTG
GCCTCGGGCTTGTATTATCGAGTTTGAGGCACGGGCATTCCAGGGTCCAT
ATGACAGGGAGCCTCAGTTGAAATTTTACAAAGGGTACGTGCGACGGAGT
CTGATGAACGCGGGAGTGGTGCGGTTGGAGGGGAAGATTTATGAGGTTCA
GGGGACATTCTTCTGGCGGCAAAAGAAACAGGTGGGTAAATTTAGGGCCC
TCAAGAGATGA back to topCoding sequence (CDS) from alignment at chr1:674323..675733+ >NO01G02600.1 ID=NO01G02600.1|Name=NO01G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr1:674323..675733+ (Nannochloropsis oceanica) ATGGAGCGGAAACCCGCAGTGCTCGACATGCTTGAACTGGTGTCTGTGCA GGCGTGCATAAATACAGAGTCAGGGGGTACCACATCCTTTTACCGAAGCC GGCGTCTTTGCCAGGACCAGGCATTCTTGATTGCCTCGAGCCTCCCTACG GCATCAAATCATCTCTATGAGGGGTCGCGTCCTTCTCCTCTTGCCGTCGT GCTGCTGCCTTATTATGGCCCTAGCCTCCTGCCTCGTATGGGGACCCATT CTAGTACCTCAGTTTCGTCGGTACCTCATCTCCTTACGCAAGTCAAAGGC GGTGTTAAGCCAACGGGGAAACCCGCTGGTGGCGGTGCGGCGGGCAAGAG GTTGAAGACTGGGTCGGGAGCGGCAGGCACGTCCAAGGTCAAGCCACCAC CCGTTGTGCAAATTATCGATGACGATGATGACGACGAGGATGAGGAACAG GATAATGAGGAGGAGTGGGATGAGAATGAGGATGAAGATGATGAGAAAGA CTATGACGACAAGGAGGAAGACTACGAAGAGGAGGAGCAGGACGCTCGAT GGGGTGGACGGGGCAGTGGAAGCAAAAAGCGGCCGAATGACTGGCATTAC GCAGACAGACGCCGGCGGTTAGCAGCACGGAGAGGATCCTCGTATGGGGT AGCTGGTTTATTTAAGGGCGCAGCGAAATTGACAAGCAATTCTGTAGGAA AGGTAGCGGGGCTCTTCCAACCCAACAAATATGTGGGTCTGCGGGAAGTG TTGGGATTGTGGAAAGTCAAGCAAAAAATCGCTCTGCCAGGGGGCGAACC TGAACGATGCGAGGCCACCTTAGAAATCCGAAAAGATGGCTCAGTTGTCA CTTTTTTTGAGGGACACGAGCTAGCTTCCGAGTTTTTGTTCAAAGAGAGA CAGTGGCCTCGGGCTTGTATTATCGAGTTTGAGGCACGGGCATTCCAGGG TCCATATGACAGGGAGCCTCAGTTGAAATTTTACAAAGGGTACGTGCGAC GGAGTCTGATGAACGCGGGAGTGGTGCGGTTGGAGGGGAAGATTTATGAG GTTCAGGGGACATTCTTCTGGCGGCAAAAGAAACAGGTGGGTAAATTTAG GGCCCTCAAGAGATGA back to top
|