NO01G01960, NO01G01960 (gene) Nannochloropsis oceanica

Overview
NameNO01G01960
Unique NameNO01G01960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2807
Alignment locationchr1:495246..498052 -

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Properties
Property NameValue
DescriptionProtein kinase c binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:495246..498052 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036265HIT-like_sf
IPR011146HIT-like
IPR001310Histidine_triad_HIT
Homology
[Close]
BLAST of NO01G01960 vs. NCBI_GenBank
Match: EWM29206.1 (protein kinase c binding protein [Nannochloropsis gaditana])

HSP 1 Score: 246.5 bits (628), Expect = 6.500e-62
Identity = 123/187 (65.78%), Postives = 142/187 (75.94%), Query Frame = 0 
Query:    1 MSHRLARLPQHFLFRRPSTLPLEAGAFITKAASSIIITRFLSSDGKYKQMVDEVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188
            MS RL RL QH L  R S         +++     ++T       +   M DEV E+RKAAA++MEEAADAG PT+FDKI K EI ++FIYEDD CVAF DLSPQGPVHFLVIPK++ GL+RLSKA E +KALLGHLLYVAQ VAK++GLVPGGFRVVINDG DGSQSVYHLH+HVIGGRQM WPPG
Sbjct:    1 MSQRLVRLSQHLLVHRTSLHATSIAVRLSRTTRRCLVT-----GNQANTMADEVAESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQMGWPPG 182
[Close]
BLAST of NO01G01960 vs. NCBI_GenBank
Match: EWM29205.1 (protein kinase c binding protein [Nannochloropsis gaditana])

HSP 1 Score: 233.8 bits (595), Expect = 4.400e-58
Identity = 119/186 (63.98%), Postives = 138/186 (74.19%), Query Frame = 0 
Query:    1 MSHRLARLPQHFLFRRPSTLPLEAGAFITKAASSIIITRFLSSDGKYKQMVDEVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPP 187
            MS RL RL QH L  R S         +++     ++T       +   M DEV E+RKAAA++MEEAADAG PT+FDKI K EI ++FIYEDD CVAF DLSPQGPVHFLVIPK++ GL+RLSKA E +KALLGHLLYVAQ VAK++GLVPGGFRVVINDG DGSQSVYHLH+HVIGGRQ    P
Sbjct:    1 MSQRLVRLSQHLLVHRTSLHATSIAVRLSRTTRRCLVT-----GNQANTMADEVAESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQNMCTP 181
[Close]
BLAST of NO01G01960 vs. NCBI_GenBank
Match: CBN74620.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 177.6 bits (449), Expect = 3.700e-41
Identity = 81/113 (71.68%), Postives = 95/113 (84.07%), Query Frame = 0 
Query:   75 TIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188
            TIFDKI   EI  D I+ED+LC+AF D+SPQ PVHFLVIPK + GLT+LSKA + NKALLGHL++VAQ VAKEQGL   GFRVV+NDGV G Q+VYHLH+HVIGGRQ++WPPG
Sbjct:   94 TIFDKIISKEIPADIIHEDELCLAFNDISPQAPVHFLVIPKSRDGLTQLSKAVDSNKALLGHLMFVAQKVAKEQGL-DEGFRVVVNDGVQGCQTVYHLHIHVIGGRQLKWPPG 205
[Close]
BLAST of NO01G01960 vs. NCBI_GenBank
Match: PRW60504.1 (14 kDa zinc-binding [Chlorella sorokiniana])

HSP 1 Score: 175.6 bits (444), Expect = 1.400e-40
Identity = 86/138 (62.32%), Postives = 106/138 (76.81%), Query Frame = 0 
Query:   50 MVDEVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188
            M  EV  A+ AAA+     AD+G+PTIFDKI   +I    IYED+  +AF+D++PQGPVHFLVIPK + GLT+L+KA E +K LLGHLLYVA  VAK++GL   G+RVV+NDG +G QSVYHLHLH+IGGRQM WPPG
Sbjct:    1 MASEVERAQAAAAQ-----ADSGAPTIFDKIISKQIPAQIIYEDEDALAFRDINPQGPVHFLVIPKVRNGLTQLAKAKEEHKPLLGHLLYVAAQVAKQEGL-SQGYRVVVNDGPNGCQSVYHLHLHIIGGRQMNWPPG 132
[Close]
BLAST of NO01G01960 vs. NCBI_GenBank
Match: XP_005851832.1 (hypothetical protein CHLNCDRAFT_133322 [Chlorella variabilis] >EFN59730.1 hypothetical protein CHLNCDRAFT_133322 [Chlorella variabilis])

HSP 1 Score: 174.9 bits (442), Expect = 2.400e-40
Identity = 87/132 (65.91%), Postives = 101/132 (76.52%), Query Frame = 0 
Query:   56 EARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188
            EA KA A     AAD G+PTIFDKI   +I    IYED+  +AF+D+SPQGPVHFLVIPK + GLT+LSKA E +K LLGHLLYVA  VAK++GL   G+RV INDG +G QSVYHLHLH+IGGRQM WPPG
Sbjct:    4 EAEKAQA--AASAADTGAPTIFDKIIAKQIPAQIIYEDEQALAFRDISPQGPVHFLVIPKVRNGLTQLSKAKEEHKPLLGHLLYVAAQVAKQEGL-SQGYRVAINDGPNGCQSVYHLHLHIIGGRQMSWPPG 132
[Close]
BLAST of NO01G01960 vs. NCBI_GenBank
Match: XP_002504781.1 (predicted protein [Micromonas commoda] >ACO66039.1 predicted protein [Micromonas commoda])

HSP 1 Score: 173.3 bits (438), Expect = 7.000e-40
Identity = 80/119 (67.23%), Postives = 98/119 (82.35%), Query Frame = 0 
Query:   69 ADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188
            A++G PTIFDKI   EI +D IYED+LC+AF+D++PQ   HFLVIPK + GLT+LSKA EG+K LLGHLLY AQ VAK++ L   GFRVVINDGV+G QSVYHLH+HV+GG+Q+ WPPG
Sbjct:    2 ANSGEPTIFDKIIAKEIPSDVIYEDNLCLAFRDIAPQAKTHFLVIPKIRSGLTQLSKAEEGHKELLGHLLYTAQKVAKQEKL-DKGFRVVINDGVEGCQSVYHLHIHVVGGQQLSWPPG 119
[Close]
BLAST of NO01G01960 vs. NCBI_GenBank
Match: XP_001696200.1 (protein kinase C binding protein [Chlamydomonas reinhardtii] >PNW82081.1 hypothetical protein CHLRE_06g273000v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 172.2 bits (435), Expect = 1.600e-39
Identity = 81/129 (62.79%), Postives = 100/129 (77.52%), Query Frame = 0 
Query:   59 KAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188
            +AAA+     AD   PTIFDKI   EI  + IYEDD  +AF+D+ PQ PVHFLVIPK++ GLTRLSKA+  +KALLGHL++VAQHVA ++ L   GFRVV+NDG +G QSVYHLHLH++GGRQ+ WPPG
Sbjct:    5 EAAAKAAAHLADTEPPTIFDKIVSKEIPANIIYEDDEALAFRDIQPQAPVHFLVIPKKRNGLTRLSKASPEHKALLGHLMWVAQHVAMKENL-GDGFRVVVNDGPNGCQSVYHLHLHIMGGRQLTWPPG 132
[Close]
BLAST of NO01G01960 vs. NCBI_GenBank
Match: KXZ52089.1 (hypothetical protein GPECTOR_10g1112 [Gonium pectorale])

HSP 1 Score: 171.0 bits (432), Expect = 3.500e-39
Identity = 84/134 (62.69%), Postives = 98/134 (73.13%), Query Frame = 0 
Query:   54 VGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188
            +    +AAA+     AD   PTIFDKI   +I    IYEDD  +AF+D+SPQ PVHFLVIPK + GLTRLSKATE +KALLGHLL+VAQ VA  + L   GFRV INDG +G QSVYHLHLHV+GGRQ+ WPPG
Sbjct:    1 MASGEEAAAKAAAHLADQDPPTIFDKIVAKQIPATIIYEDDQALAFRDISPQAPVHFLVIPKNRSGLTRLSKATEEHKALLGHLLFVAQKVAMAENL-GEGFRVTINDGPNGCQSVYHLHLHVMGGRQLTWPPG 133
[Close]
BLAST of NO01G01960 vs. NCBI_GenBank
Match: OUW43830.1 (histidine triad nucleotide-binding protein [bacterium TMED181])

HSP 1 Score: 170.6 bits (431), Expect = 4.500e-39
Identity = 79/119 (66.39%), Postives = 97/119 (81.51%), Query Frame = 0 
Query:   69 ADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188
            A++G  TIFDKI   EI +D IYED+LC+AF+D++PQ   HFLVIPK + GLT+LSKA EG+K LLGHLLY AQ VAK++ L   GFRVVINDGV+G QSVYHLH+HV+GG+Q+ WPPG
Sbjct:    2 ANSGEATIFDKIIAKEIPSDIIYEDNLCLAFRDIAPQAKTHFLVIPKIRSGLTQLSKAEEGHKELLGHLLYTAQKVAKQEKL-DQGFRVVINDGVEGCQSVYHLHIHVVGGQQLSWPPG 119
[Close]
BLAST of NO01G01960 vs. NCBI_GenBank
Match: PIA42843.1 (hypothetical protein AQUCO_02000353v1 [Aquilegia coerulea])

HSP 1 Score: 170.6 bits (431), Expect = 4.500e-39
Identity = 77/127 (60.63%), Postives = 100/127 (78.74%), Query Frame = 0 
Query:   61 AARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188
            +A+   E AD  +PTIFDKI   EI +  +YEDD  +AF+D++PQ PVH LVIPK + GLT+LSKA E +  +LG LLYVA+ VA+++G++  G+RVV+NDGVDG QSVYHLHLHV+GGRQM+WPPG
Sbjct:   52 SAKSAVENADTNNPTIFDKIISKEIPSTIVYEDDKVLAFRDINPQAPVHVLVIPKFRDGLTQLSKAEERHNEILGQLLYVARIVAEKEGILKNGYRVVVNDGVDGCQSVYHLHLHVLGGRQMKWPPG 178
The following BLAST results are available for this feature:
BLAST of NO01G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29206.16.500e-6265.78protein kinase c binding protein [Nannochloropsis ... [more]
EWM29205.14.400e-5863.98protein kinase c binding protein [Nannochloropsis ... [more]
CBN74620.13.700e-4171.68conserved unknown protein [Ectocarpus siliculosus][more]
PRW60504.11.400e-4062.3214 kDa zinc-binding [Chlorella sorokiniana][more]
XP_005851832.12.400e-4065.91hypothetical protein CHLNCDRAFT_133322 [Chlorella ... [more]
XP_002504781.17.000e-4067.23predicted protein [Micromonas commoda] >ACO66039.1... [more]
XP_001696200.11.600e-3962.79protein kinase C binding protein [Chlamydomonas re... [more]
KXZ52089.13.500e-3962.69hypothetical protein GPECTOR_10g1112 [Gonium pecto... [more]
OUW43830.14.500e-3966.39histidine triad nucleotide-binding protein [bacter... [more]
PIA42843.14.500e-3960.63hypothetical protein AQUCO_02000353v1 [Aquilegia c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01960.2NO01G01960.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G01960.1NO01G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100007g18gene1497Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01960.2NO01G01960.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G01960.1NO01G01960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01960 ID=NO01G01960|Name=NO01G01960|organism=Nannochloropsis oceanica|type=gene|length=2807bp
ATGTGATTCACTTATTCATTTGTTTTCATTTTTGGTCTATGCTTTGATTT
AATTTACATGCAAGACTATTCGCCGTCGTGAGATTTCTCGTTCCTGCCTT
CCGTTGGTTTGTAAACATGATTTCCTTTTTCTCTTCCAAGCAAGCACGCT
ACCCATTGTCGTCCTCTGGCCGATGGATGCGCACGACCTTGTAGTTACTC
TCTGGATTCAATCTAGCCATCATTTGCTTATGCTCCTCCTCGATGCTGAA
TTCTCGCTCACTCTTACTTTGAAGGCGATTATCCTTGGCTTCCACTCGAC
CTTGAACAAACTGTTGATGAGAAAGGGGGACATGGAGGGAAGGTGTGACC
AGGGGAAAGAACTAGAGGCAACGGTTTCATGGGTGCGTTGAACTAAACGA
AGGATGTCAAGTGGCTTGCAAAATAACGCTGCGGTATTAACTAGCCAAGA
GGGGCGGGGAAGGCAAGGGGCAGGATTTAGAGGGCTTGAGGGTCTTACAA
CGACACTCGTACCTTGGCCAAGAAAACAGAGCCGCCCGCCAAAAAGACAA
CCAAAGGCAAGCCCGCGCTCATCTTCTTCCACAGTTGGGGCGATAGCATG
GGTGGACGTGCTTCACGCAACGCGCCTGTACGTGATGTGTGCGCGAGTGT
GATGGTGGTCATTTGAGTGAAGGTGTTGGGTTGGGAGGTTGCTTGGCTGT
CGGTCCACGCTCACGATAGCAAGCCAAGACAGGCCCTCCGTCACCACAAG
CAGCAGCAGAATCAGGTTCTTTGAACTCGTCATGGTAATTCGCCCATGAG
CTTGTGGGTGTGGGCAGGAGCGTGTGCATGGTACGCAAAATGCGCTACAA
TCATCGCCCTCGTTGAATCATCTTGCCCAAGGCCGTTCAGCTTTATTCAG
CCTGCTTTTTACGCCCCCCATCATTCACTGCGTTCTCTGCGAGGAAGAAA
AACAGGCAGAGTCCTCCAGTTCTTTACATTCTCCAGGATAGACGCTGACG
ATAATCACATTCCCGCCTTGCGAGCTGCCGTCCGGTCAGCCCAGCCTCAA
GTCGCCGAAGCCAGCACAAACAAGCTCTCTCCTCACCCCATCGTAGCCCT
GGCCGCCCTGACCCAAGTCGCCCAAGCGAGCATGCTGACATCATGAGTAG
AATTGGTGGATCAAGGCTGTCAGTGACTTCTAGACGAAGTCAAGGGCCTC
GCATAGATTGTTGATCTAGTGCTCTCCACCACCCGCCACGAATCACGTCG
CATGCCTCACAAAAGACTCACACCACGCCGCACACGTGCAGGCACTCCTC
TGTCAACATCGTCTTCTTCATTTGGAGGACGCTTAAGTTGTGGTTGCACA
GGGTCTGAATCCTTGAATGAGCCATCGTCTCGCCCGTCTCCCGCAGCATT
TTTTGTTCCGCCGCCCCTCAACACTACCCCTCGAAGCAGGGGCCTTCATT
ACCAAGGCTGCCAGCAGCATCATCATTACGCGTTTTCTTTCCAGTGACGG
AAAATATAAACAGATGGTTGATGAAGTCGGAGAAGCTCGCAAGGCCGCAG
CCAGGCAGATGGAGGAAGCGGCAGACGCTGGCTCGgtaagtcacagcttt
atattaaaccccgtggtctcagggaaggagagagagggaatacgtgagtg
aggtatgcgtgtaggttcaacgagctcaaatatctcttatatggcttgaa
ggtagttatattctttcgataactgtacgtcttgcagcaaatgatttgcc
tatgcagggcgatggctttcactctcaaaagagacatatgttctctcccc
tcctggtgctctcgcaactcatcccgcacctttatcatctatatttcgca
ttttctattggcttgaggtgtcaaatcataaacgtcgtatttccctattc
ttattccagtccatggcacaaacacacaacacacacagCCCACTATTTTT
GACAAAATAGCGAAAGGGGAGATCCACACCGATTTTATTTACGAAGACGA
TCTATGCGTCGCCTTCAAAGACTTGAGCCCCCAGGGCCCCGTGCATTTCT
TGGTAATTCCCAAGGAGAAGCAAGGTTTGACGCGTTTGAGCAAGGCAACG
GAGGGGAATAAGGCTTTGTTGGGGCATCTGCTTTACGTCGCGCAGCATGT
GGCGAAGGAGCAGgtatgtctcgtctgtttttgtttttattttcgtatcg
ttgcctactgcttcgcacattcagagttatagatgtatgcacatacacac
atcgatgcagatctcagcaagtctttactgtgcgtaccgtgcggaaagct
taactttttaacattcccgttttcttttctctattaaagGGTTTAGTGCC
AGGAGGCTTTCGCGTGGTGATCAACGATGGAGTTGATGGGAGTCAGTCAG
TGTATCATTTGCACTTACATGTGATCGGTGGGCGACAGgtaagtagatat
tgaagggtgaggttgagaggggagcgtgagagggtggaagtagaggtgga
aggccgtttacggtgaaggtttgtgtgagcacattgactcatttcttcac
tttgcacgtgtacacagATGCGGTGGCCGCCAGGATAAAATTTAATGGCT
TGCTTTCGAATGTAAGAAAAATGTGTTGGTTTCTCTGTTGCGGAGTGGCA
GTGGAATTGAGGAAAAAACTCACATCGATGACCAGAAAAAACATGAAAGA
CGGCAGTAGGGAGTGCAATCAAGCTATCGAAGAACAAGTATGACAATAAC
AGAAATAATGCTGTTACTATCAATTATTTTTATTTTCCTTTGCCTCGCCC
TAGCTTT
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protein sequence of NO01G01960.2

>NO01G01960.2-protein ID=NO01G01960.2-protein|Name=NO01G01960.2|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MSHRLARLPQHFLFRRPSTLPLEAGAFITKAASSIIITRFLSSDGKYKQM
VDEVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFK
DLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGL
VPGGFRVVINDGVDGSQSVYHLHLHVIGGRQVSRY*
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protein sequence of NO01G01960.1

>NO01G01960.1-protein ID=NO01G01960.1-protein|Name=NO01G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MSHRLARLPQHFLFRRPSTLPLEAGAFITKAASSIIITRFLSSDGKYKQM
VDEVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFK
DLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGL
VPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG*
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Synonyms
Publications