NO01G01960.2, NO01G01960.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01960.2
Unique NameNO01G01960.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2278
Alignment locationchr1:495246..498052 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:495246..498052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G01960.2 vs.
Match: EWM29206.1 (protein kinase c binding protein [Nannochloropsis gaditana])

HSP 1 Score: 232.6 bits (592), Expect = 9.600e-58
Identity = 118/182 (64.84%), Postives = 138/182 (75.82%), Query Frame = 0
Query:    1 MSHRLARLPQHFLFRRPSTLPLEAGAFITKAASSIIITRFLSSDGKYKQMVDEVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQV 183
            MS RL RL QH L  R S         +++     ++T       +   M DEV E+RKAAA++MEEAADAG PT+FDKI K EI ++FIYEDD CVAF DLSPQGPVHFLVIPK++ GL+RLSKA E +KALLGHLLYVAQ VAK++GLVPGGFRVVINDG DGSQSVYHLH+HVIGGRQ+
Sbjct:    1 MSQRLVRLSQHLLVHRTSLHATSIAVRLSRTTRRCLVT-----GNQANTMADEVAESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQM 177          
The following BLAST results are available for this feature:
BLAST of NO01G01960.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29206.19.600e-5864.84protein kinase c binding protein [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01960NO01G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01960.2NO01G01960.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01960.2.cds1NO01G01960.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01960.2.cds2NO01G01960.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01960.2.cds3NO01G01960.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01960.2 ID=NO01G01960.2|Name=NO01G01960.2|organism=Nannochloropsis oceanica|type=mRNA|length=2278bp
ATGTGATTCACTTATTCATTTGTTTTCATTTTTGGTCTATGCTTTGATTT
AATTTACATGCAAGACTATTCGCCGTCGTGAGATTTCTCGTTCCTGCCTT
CCGTTGGTTTGTAAACATGATTTCCTTTTTCTCTTCCAAGCAAGCACGCT
ACCCATTGTCGTCCTCTGGCCGATGGATGCGCACGACCTTGTAGTTACTC
TCTGGATTCAATCTAGCCATCATTTGCTTATGCTCCTCCTCGATGCTGAA
TTCTCGCTCACTCTTACTTTGAAGGCGATTATCCTTGGCTTCCACTCGAC
CTTGAACAAACTGTTGATGAGAAAGGGGGACATGGAGGGAAGGTGTGACC
AGGGGAAAGAACTAGAGGCAACGGTTTCATGGGTGCGTTGAACTAAACGA
AGGATGTCAAGTGGCTTGCAAAATAACGCTGCGGTATTAACTAGCCAAGA
GGGGCGGGGAAGGCAAGGGGCAGGATTTAGAGGGCTTGAGGGTCTTACAA
CGACACTCGTACCTTGGCCAAGAAAACAGAGCCGCCCGCCAAAAAGACAA
CCAAAGGCAAGCCCGCGCTCATCTTCTTCCACAGTTGGGGCGATAGCATG
GGTGGACGTGCTTCACGCAACGCGCCTGTACGTGATGTGTGCGCGAGTGT
GATGGTGGTCATTTGAGTGAAGGTGTTGGGTTGGGAGGTTGCTTGGCTGT
CGGTCCACGCTCACGATAGCAAGCCAAGACAGGCCCTCCGTCACCACAAG
CAGCAGCAGAATCAGGTTCTTTGAACTCGTCATGGTAATTCGCCCATGAG
CTTGTGGGTGTGGGCAGGAGCGTGTGCATGGTACGCAAAATGCGCTACAA
TCATCGCCCTCGTTGAATCATCTTGCCCAAGGCCGTTCAGCTTTATTCAG
CCTGCTTTTTACGCCCCCCATCATTCACTGCGTTCTCTGCGAGGAAGAAA
AACAGGCAGAGTCCTCCAGTTCTTTACATTCTCCAGGATAGACGCTGACG
ATAATCACATTCCCGCCTTGCGAGCTGCCGTCCGGTCAGCCCAGCCTCAA
GTCGCCGAAGCCAGCACAAACAAGCTCTCTCCTCACCCCATCGTAGCCCT
GGCCGCCCTGACCCAAGTCGCCCAAGCGAGCATGCTGACATCATGAGTAG
AATTGGTGGATCAAGGCTGTCAGTGACTTCTAGACGAAGTCAAGGGCCTC
GCATAGATTGTTGATCTAGTGCTCTCCACCACCCGCCACGAATCACGTCG
CATGCCTCACAAAAGACTCACACCACGCCGCACACGTGCAGGCACTCCTC
TGTCAACATCGTCTTCTTCATTTGGAGGACGCTTAAGTTGTGGTTGCACA
GGGTCTGAATCCTTGAATGAGCCATCGTCTCGCCCGTCTCCCGCAGCATT
TTTTGTTCCGCCGCCCCTCAACACTACCCCTCGAAGCAGGGGCCTTCATT
ACCAAGGCTGCCAGCAGCATCATCATTACGCGTTTTCTTTCCAGTGACGG
AAAATATAAACAGATGGTTGATGAAGTCGGAGAAGCTCGCAAGGCCGCAG
CCAGGCAGATGGAGGAAGCGGCAGACGCTGGCTCGCCCACTATTTTTGAC
AAAATAGCGAAAGGGGAGATCCACACCGATTTTATTTACGAAGACGATCT
ATGCGTCGCCTTCAAAGACTTGAGCCCCCAGGGCCCCGTGCATTTCTTGG
TAATTCCCAAGGAGAAGCAAGGTTTGACGCGTTTGAGCAAGGCAACGGAG
GGGAATAAGGCTTTGTTGGGGCATCTGCTTTACGTCGCGCAGCATGTGGC
GAAGGAGCAGGGTTTAGTGCCAGGAGGCTTTCGCGTGGTGATCAACGATG
GAGTTGATGGGAGTCAGTCAGTGTATCATTTGCACTTACATGTGATCGGT
GGGCGACAGGTAAGTAGATATTGAAGGGTGAGGTTGAGAGGGGAGCGTGA
GAGGGTGGAAGTAGAGGTGGAAGGCCGTTTACGGTGAAGGTTTGTGTGAG
CACATTGACTCATTTCTTCACTTTGCACGTGTACACAGATGCGGTGGCCG
CCAGGATAAAATTTAATGGCTTGCTTTCGAATGTAAGAAAAATGTGTTGG
TTTCTCTGTTGCGGAGTGGCAGTGGAATTGAGGAAAAAACTCACATCGAT
GACCAGAAAAAACATGAAAGACGGCAGTAGGGAGTGCAATCAAGCTATCG
AAGAACAAGTATGACAATAACAGAAATAATGCTGTTACTATCAATTATTT
TTATTTTCCTTTGCCTCGCCCTAGCTTT
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protein sequence of NO01G01960.2

>NO01G01960.2-protein ID=NO01G01960.2-protein|Name=NO01G01960.2|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MSHRLARLPQHFLFRRPSTLPLEAGAFITKAASSIIITRFLSSDGKYKQM
VDEVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFK
DLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGL
VPGGFRVVINDGVDGSQSVYHLHLHVIGGRQVSRY*
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mRNA from alignment at chr1:495246..498052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01960.2 ID=NO01G01960.2|Name=NO01G01960.2|organism=Nannochloropsis oceanica|type=mRNA|length=2807bp|location=Sequence derived from alignment at chr1:495246..498052- (Nannochloropsis oceanica)
ATGTGATTCACTTATTCATTTGTTTTCATTTTTGGTCTATGCTTTGATTT AATTTACATGCAAGACTATTCGCCGTCGTGAGATTTCTCGTTCCTGCCTT CCGTTGGTTTGTAAACATGATTTCCTTTTTCTCTTCCAAGCAAGCACGCT ACCCATTGTCGTCCTCTGGCCGATGGATGCGCACGACCTTGTAGTTACTC TCTGGATTCAATCTAGCCATCATTTGCTTATGCTCCTCCTCGATGCTGAA TTCTCGCTCACTCTTACTTTGAAGGCGATTATCCTTGGCTTCCACTCGAC CTTGAACAAACTGTTGATGAGAAAGGGGGACATGGAGGGAAGGTGTGACC AGGGGAAAGAACTAGAGGCAACGGTTTCATGGGTGCGTTGAACTAAACGA AGGATGTCAAGTGGCTTGCAAAATAACGCTGCGGTATTAACTAGCCAAGA GGGGCGGGGAAGGCAAGGGGCAGGATTTAGAGGGCTTGAGGGTCTTACAA CGACACTCGTACCTTGGCCAAGAAAACAGAGCCGCCCGCCAAAAAGACAA CCAAAGGCAAGCCCGCGCTCATCTTCTTCCACAGTTGGGGCGATAGCATG GGTGGACGTGCTTCACGCAACGCGCCTGTACGTGATGTGTGCGCGAGTGT GATGGTGGTCATTTGAGTGAAGGTGTTGGGTTGGGAGGTTGCTTGGCTGT CGGTCCACGCTCACGATAGCAAGCCAAGACAGGCCCTCCGTCACCACAAG CAGCAGCAGAATCAGGTTCTTTGAACTCGTCATGGTAATTCGCCCATGAG CTTGTGGGTGTGGGCAGGAGCGTGTGCATGGTACGCAAAATGCGCTACAA TCATCGCCCTCGTTGAATCATCTTGCCCAAGGCCGTTCAGCTTTATTCAG CCTGCTTTTTACGCCCCCCATCATTCACTGCGTTCTCTGCGAGGAAGAAA AACAGGCAGAGTCCTCCAGTTCTTTACATTCTCCAGGATAGACGCTGACG ATAATCACATTCCCGCCTTGCGAGCTGCCGTCCGGTCAGCCCAGCCTCAA GTCGCCGAAGCCAGCACAAACAAGCTCTCTCCTCACCCCATCGTAGCCCT GGCCGCCCTGACCCAAGTCGCCCAAGCGAGCATGCTGACATCATGAGTAG AATTGGTGGATCAAGGCTGTCAGTGACTTCTAGACGAAGTCAAGGGCCTC GCATAGATTGTTGATCTAGTGCTCTCCACCACCCGCCACGAATCACGTCG CATGCCTCACAAAAGACTCACACCACGCCGCACACGTGCAGGCACTCCTC TGTCAACATCGTCTTCTTCATTTGGAGGACGCTTAAGTTGTGGTTGCACA GGGTCTGAATCCTTGAATGAGCCATCGTCTCGCCCGTCTCCCGCAGCATT TTTTGTTCCGCCGCCCCTCAACACTACCCCTCGAAGCAGGGGCCTTCATT ACCAAGGCTGCCAGCAGCATCATCATTACGCGTTTTCTTTCCAGTGACGG AAAATATAAACAGATGGTTGATGAAGTCGGAGAAGCTCGCAAGGCCGCAG CCAGGCAGATGGAGGAAGCGGCAGACGCTGGCTCGGTAAGTCACAGCTTT ATATTAAACCCCGTGGTCTCAGGGAAGGAGAGAGAGGGAATACGTGAGTG AGGTATGCGTGTAGGTTCAACGAGCTCAAATATCTCTTATATGGCTTGAA GGTAGTTATATTCTTTCGATAACTGTACGTCTTGCAGCAAATGATTTGCC TATGCAGGGCGATGGCTTTCACTCTCAAAAGAGACATATGTTCTCTCCCC TCCTGGTGCTCTCGCAACTCATCCCGCACCTTTATCATCTATATTTCGCA TTTTCTATTGGCTTGAGGTGTCAAATCATAAACGTCGTATTTCCCTATTC TTATTCCAGTCCATGGCACAAACACACAACACACACAGCCCACTATTTTT GACAAAATAGCGAAAGGGGAGATCCACACCGATTTTATTTACGAAGACGA TCTATGCGTCGCCTTCAAAGACTTGAGCCCCCAGGGCCCCGTGCATTTCT TGGTAATTCCCAAGGAGAAGCAAGGTTTGACGCGTTTGAGCAAGGCAACG GAGGGGAATAAGGCTTTGTTGGGGCATCTGCTTTACGTCGCGCAGCATGT GGCGAAGGAGCAGGTATGTCTCGTCTGTTTTTGTTTTTATTTTCGTATCG TTGCCTACTGCTTCGCACATTCAGAGTTATAGATGTATGCACATACACAC ATCGATGCAGATCTCAGCAAGTCTTTACTGTGCGTACCGTGCGGAAAGCT TAACTTTTTAACATTCCCGTTTTCTTTTCTCTATTAAAGGGTTTAGTGCC AGGAGGCTTTCGCGTGGTGATCAACGATGGAGTTGATGGGAGTCAGTCAG TGTATCATTTGCACTTACATGTGATCGGTGGGCGACAGGTAAGTAGATAT TGAAGGGTGAGGTTGAGAGGGGAGCGTGAGAGGGTGGAAGTAGAGGTGGA AGGCCGTTTACGGTGAAGGTTTGTGTGAGCACATTGACTCATTTCTTCAC TTTGCACGTGTACACAGATGCGGTGGCCGCCAGGATAAAATTTAATGGCT TGCTTTCGAATGTAAGAAAAATGTGTTGGTTTCTCTGTTGCGGAGTGGCA GTGGAATTGAGGAAAAAACTCACATCGATGACCAGAAAAAACATGAAAGA CGGCAGTAGGGAGTGCAATCAAGCTATCGAAGAACAAGTATGACAATAAC AGAAATAATGCTGTTACTATCAATTATTTTTATTTTCCTTTGCCTCGCCC TAGCTTT
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Coding sequence (CDS) from alignment at chr1:495246..498052-

>NO01G01960.2 ID=NO01G01960.2|Name=NO01G01960.2|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at chr1:495246..498052- (Nannochloropsis oceanica)
ATGAGCCATCGTCTCGCCCGTCTCCCGCAGCATTTTTTGTTCCGCCGCCC
CTCAACACTACCCCTCGAAGCAGGGGCCTTCATTACCAAGGCTGCCAGCA
GCATCATCATTACGCGTTTTCTTTCCAGTGACGGAAAATATAAACAGATG
GTTGATGAAGTCGGAGAAGCTCGCAAGGCCGCAGCCAGGCAGATGGAGGA
AGCGGCAGACGCTGGCTCGCCCACTATTTTTGACAAAATAGCGAAAGGGG
AGATCCACACCGATTTTATTTACGAAGACGATCTATGCGTCGCCTTCAAA
GACTTGAGCCCCCAGGGCCCCGTGCATTTCTTGGTAATTCCCAAGGAGAA
GCAAGGTTTGACGCGTTTGAGCAAGGCAACGGAGGGGAATAAGGCTTTGT
TGGGGCATCTGCTTTACGTCGCGCAGCATGTGGCGAAGGAGCAGGGTTTA
GTGCCAGGAGGCTTTCGCGTGGTGATCAACGATGGAGTTGATGGGAGTCA
GTCAGTGTATCATTTGCACTTACATGTGATCGGTGGGCGACAGGTAAGTA
GATATTGA
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Synonyms
Publications