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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:495246..498052 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01960.2 vs.
Match: EWM29206.1 (protein kinase c binding protein [Nannochloropsis gaditana]) HSP 1 Score: 232.6 bits (592), Expect = 9.600e-58 Identity = 118/182 (64.84%), Postives = 138/182 (75.82%), Query Frame = 0
Query: 1 MSHRLARLPQHFLFRRPSTLPLEAGAFITKAASSIIITRFLSSDGKYKQMVDEVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQV 183
MS RL RL QH L R S +++ ++T + M DEV E+RKAAA++MEEAADAG PT+FDKI K EI ++FIYEDD CVAF DLSPQGPVHFLVIPK++ GL+RLSKA E +KALLGHLLYVAQ VAK++GLVPGGFRVVINDG DGSQSVYHLH+HVIGGRQ+
Sbjct: 1 MSQRLVRLSQHLLVHRTSLHATSIAVRLSRTTRRCLVT-----GNQANTMADEVAESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQGPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGFRVVINDGPDGSQSVYHLHIHVIGGRQM 177
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01960.2 ID=NO01G01960.2|Name=NO01G01960.2|organism=Nannochloropsis oceanica|type=mRNA|length=2278bp ATGTGATTCACTTATTCATTTGTTTTCATTTTTGGTCTATGCTTTGATTT AATTTACATGCAAGACTATTCGCCGTCGTGAGATTTCTCGTTCCTGCCTT CCGTTGGTTTGTAAACATGATTTCCTTTTTCTCTTCCAAGCAAGCACGCT ACCCATTGTCGTCCTCTGGCCGATGGATGCGCACGACCTTGTAGTTACTC TCTGGATTCAATCTAGCCATCATTTGCTTATGCTCCTCCTCGATGCTGAA TTCTCGCTCACTCTTACTTTGAAGGCGATTATCCTTGGCTTCCACTCGAC CTTGAACAAACTGTTGATGAGAAAGGGGGACATGGAGGGAAGGTGTGACC AGGGGAAAGAACTAGAGGCAACGGTTTCATGGGTGCGTTGAACTAAACGA AGGATGTCAAGTGGCTTGCAAAATAACGCTGCGGTATTAACTAGCCAAGA GGGGCGGGGAAGGCAAGGGGCAGGATTTAGAGGGCTTGAGGGTCTTACAA CGACACTCGTACCTTGGCCAAGAAAACAGAGCCGCCCGCCAAAAAGACAA CCAAAGGCAAGCCCGCGCTCATCTTCTTCCACAGTTGGGGCGATAGCATG GGTGGACGTGCTTCACGCAACGCGCCTGTACGTGATGTGTGCGCGAGTGT GATGGTGGTCATTTGAGTGAAGGTGTTGGGTTGGGAGGTTGCTTGGCTGT CGGTCCACGCTCACGATAGCAAGCCAAGACAGGCCCTCCGTCACCACAAG CAGCAGCAGAATCAGGTTCTTTGAACTCGTCATGGTAATTCGCCCATGAG CTTGTGGGTGTGGGCAGGAGCGTGTGCATGGTACGCAAAATGCGCTACAA TCATCGCCCTCGTTGAATCATCTTGCCCAAGGCCGTTCAGCTTTATTCAG CCTGCTTTTTACGCCCCCCATCATTCACTGCGTTCTCTGCGAGGAAGAAA AACAGGCAGAGTCCTCCAGTTCTTTACATTCTCCAGGATAGACGCTGACG ATAATCACATTCCCGCCTTGCGAGCTGCCGTCCGGTCAGCCCAGCCTCAA GTCGCCGAAGCCAGCACAAACAAGCTCTCTCCTCACCCCATCGTAGCCCT GGCCGCCCTGACCCAAGTCGCCCAAGCGAGCATGCTGACATCATGAGTAG AATTGGTGGATCAAGGCTGTCAGTGACTTCTAGACGAAGTCAAGGGCCTC GCATAGATTGTTGATCTAGTGCTCTCCACCACCCGCCACGAATCACGTCG CATGCCTCACAAAAGACTCACACCACGCCGCACACGTGCAGGCACTCCTC TGTCAACATCGTCTTCTTCATTTGGAGGACGCTTAAGTTGTGGTTGCACA GGGTCTGAATCCTTGAATGAGCCATCGTCTCGCCCGTCTCCCGCAGCATT TTTTGTTCCGCCGCCCCTCAACACTACCCCTCGAAGCAGGGGCCTTCATT ACCAAGGCTGCCAGCAGCATCATCATTACGCGTTTTCTTTCCAGTGACGG AAAATATAAACAGATGGTTGATGAAGTCGGAGAAGCTCGCAAGGCCGCAG CCAGGCAGATGGAGGAAGCGGCAGACGCTGGCTCGCCCACTATTTTTGAC AAAATAGCGAAAGGGGAGATCCACACCGATTTTATTTACGAAGACGATCT ATGCGTCGCCTTCAAAGACTTGAGCCCCCAGGGCCCCGTGCATTTCTTGG TAATTCCCAAGGAGAAGCAAGGTTTGACGCGTTTGAGCAAGGCAACGGAG GGGAATAAGGCTTTGTTGGGGCATCTGCTTTACGTCGCGCAGCATGTGGC GAAGGAGCAGGGTTTAGTGCCAGGAGGCTTTCGCGTGGTGATCAACGATG GAGTTGATGGGAGTCAGTCAGTGTATCATTTGCACTTACATGTGATCGGT GGGCGACAGGTAAGTAGATATTGAAGGGTGAGGTTGAGAGGGGAGCGTGA GAGGGTGGAAGTAGAGGTGGAAGGCCGTTTACGGTGAAGGTTTGTGTGAG CACATTGACTCATTTCTTCACTTTGCACGTGTACACAGATGCGGTGGCCG CCAGGATAAAATTTAATGGCTTGCTTTCGAATGTAAGAAAAATGTGTTGG TTTCTCTGTTGCGGAGTGGCAGTGGAATTGAGGAAAAAACTCACATCGAT GACCAGAAAAAACATGAAAGACGGCAGTAGGGAGTGCAATCAAGCTATCG AAGAACAAGTATGACAATAACAGAAATAATGCTGTTACTATCAATTATTT TTATTTTCCTTTGCCTCGCCCTAGCTTT back to topprotein sequence of NO01G01960.2 >NO01G01960.2-protein ID=NO01G01960.2-protein|Name=NO01G01960.2|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp MSHRLARLPQHFLFRRPSTLPLEAGAFITKAASSIIITRFLSSDGKYKQM VDEVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFK DLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGL VPGGFRVVINDGVDGSQSVYHLHLHVIGGRQVSRY* back to topmRNA from alignment at chr1:495246..498052- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01960.2 ID=NO01G01960.2|Name=NO01G01960.2|organism=Nannochloropsis oceanica|type=mRNA|length=2807bp|location=Sequence derived from alignment at chr1:495246..498052- (Nannochloropsis oceanica) ATGTGATTCACTTATTCATTTGTTTTCATTTTTGGTCTATGCTTTGATTT
AATTTACATGCAAGACTATTCGCCGTCGTGAGATTTCTCGTTCCTGCCTT
CCGTTGGTTTGTAAACATGATTTCCTTTTTCTCTTCCAAGCAAGCACGCT
ACCCATTGTCGTCCTCTGGCCGATGGATGCGCACGACCTTGTAGTTACTC
TCTGGATTCAATCTAGCCATCATTTGCTTATGCTCCTCCTCGATGCTGAA
TTCTCGCTCACTCTTACTTTGAAGGCGATTATCCTTGGCTTCCACTCGAC
CTTGAACAAACTGTTGATGAGAAAGGGGGACATGGAGGGAAGGTGTGACC
AGGGGAAAGAACTAGAGGCAACGGTTTCATGGGTGCGTTGAACTAAACGA
AGGATGTCAAGTGGCTTGCAAAATAACGCTGCGGTATTAACTAGCCAAGA
GGGGCGGGGAAGGCAAGGGGCAGGATTTAGAGGGCTTGAGGGTCTTACAA
CGACACTCGTACCTTGGCCAAGAAAACAGAGCCGCCCGCCAAAAAGACAA
CCAAAGGCAAGCCCGCGCTCATCTTCTTCCACAGTTGGGGCGATAGCATG
GGTGGACGTGCTTCACGCAACGCGCCTGTACGTGATGTGTGCGCGAGTGT
GATGGTGGTCATTTGAGTGAAGGTGTTGGGTTGGGAGGTTGCTTGGCTGT
CGGTCCACGCTCACGATAGCAAGCCAAGACAGGCCCTCCGTCACCACAAG
CAGCAGCAGAATCAGGTTCTTTGAACTCGTCATGGTAATTCGCCCATGAG
CTTGTGGGTGTGGGCAGGAGCGTGTGCATGGTACGCAAAATGCGCTACAA
TCATCGCCCTCGTTGAATCATCTTGCCCAAGGCCGTTCAGCTTTATTCAG
CCTGCTTTTTACGCCCCCCATCATTCACTGCGTTCTCTGCGAGGAAGAAA
AACAGGCAGAGTCCTCCAGTTCTTTACATTCTCCAGGATAGACGCTGACG
ATAATCACATTCCCGCCTTGCGAGCTGCCGTCCGGTCAGCCCAGCCTCAA
GTCGCCGAAGCCAGCACAAACAAGCTCTCTCCTCACCCCATCGTAGCCCT
GGCCGCCCTGACCCAAGTCGCCCAAGCGAGCATGCTGACATCATGAGTAG
AATTGGTGGATCAAGGCTGTCAGTGACTTCTAGACGAAGTCAAGGGCCTC
GCATAGATTGTTGATCTAGTGCTCTCCACCACCCGCCACGAATCACGTCG
CATGCCTCACAAAAGACTCACACCACGCCGCACACGTGCAGGCACTCCTC
TGTCAACATCGTCTTCTTCATTTGGAGGACGCTTAAGTTGTGGTTGCACA
GGGTCTGAATCCTTGAATGAGCCATCGTCTCGCCCGTCTCCCGCAGCATT
TTTTGTTCCGCCGCCCCTCAACACTACCCCTCGAAGCAGGGGCCTTCATT
ACCAAGGCTGCCAGCAGCATCATCATTACGCGTTTTCTTTCCAGTGACGG
AAAATATAAACAGATGGTTGATGAAGTCGGAGAAGCTCGCAAGGCCGCAG
CCAGGCAGATGGAGGAAGCGGCAGACGCTGGCTCGGTAAGTCACAGCTTT
ATATTAAACCCCGTGGTCTCAGGGAAGGAGAGAGAGGGAATACGTGAGTG
AGGTATGCGTGTAGGTTCAACGAGCTCAAATATCTCTTATATGGCTTGAA
GGTAGTTATATTCTTTCGATAACTGTACGTCTTGCAGCAAATGATTTGCC
TATGCAGGGCGATGGCTTTCACTCTCAAAAGAGACATATGTTCTCTCCCC
TCCTGGTGCTCTCGCAACTCATCCCGCACCTTTATCATCTATATTTCGCA
TTTTCTATTGGCTTGAGGTGTCAAATCATAAACGTCGTATTTCCCTATTC
TTATTCCAGTCCATGGCACAAACACACAACACACACAGCCCACTATTTTT
GACAAAATAGCGAAAGGGGAGATCCACACCGATTTTATTTACGAAGACGA
TCTATGCGTCGCCTTCAAAGACTTGAGCCCCCAGGGCCCCGTGCATTTCT
TGGTAATTCCCAAGGAGAAGCAAGGTTTGACGCGTTTGAGCAAGGCAACG
GAGGGGAATAAGGCTTTGTTGGGGCATCTGCTTTACGTCGCGCAGCATGT
GGCGAAGGAGCAGGTATGTCTCGTCTGTTTTTGTTTTTATTTTCGTATCG
TTGCCTACTGCTTCGCACATTCAGAGTTATAGATGTATGCACATACACAC
ATCGATGCAGATCTCAGCAAGTCTTTACTGTGCGTACCGTGCGGAAAGCT
TAACTTTTTAACATTCCCGTTTTCTTTTCTCTATTAAAGGGTTTAGTGCC
AGGAGGCTTTCGCGTGGTGATCAACGATGGAGTTGATGGGAGTCAGTCAG
TGTATCATTTGCACTTACATGTGATCGGTGGGCGACAGGTAAGTAGATAT
TGAAGGGTGAGGTTGAGAGGGGAGCGTGAGAGGGTGGAAGTAGAGGTGGA
AGGCCGTTTACGGTGAAGGTTTGTGTGAGCACATTGACTCATTTCTTCAC
TTTGCACGTGTACACAGATGCGGTGGCCGCCAGGATAAAATTTAATGGCT
TGCTTTCGAATGTAAGAAAAATGTGTTGGTTTCTCTGTTGCGGAGTGGCA
GTGGAATTGAGGAAAAAACTCACATCGATGACCAGAAAAAACATGAAAGA
CGGCAGTAGGGAGTGCAATCAAGCTATCGAAGAACAAGTATGACAATAAC
AGAAATAATGCTGTTACTATCAATTATTTTTATTTTCCTTTGCCTCGCCC
TAGCTTT back to topCoding sequence (CDS) from alignment at chr1:495246..498052- >NO01G01960.2 ID=NO01G01960.2|Name=NO01G01960.2|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at chr1:495246..498052- (Nannochloropsis oceanica) ATGAGCCATCGTCTCGCCCGTCTCCCGCAGCATTTTTTGTTCCGCCGCCC CTCAACACTACCCCTCGAAGCAGGGGCCTTCATTACCAAGGCTGCCAGCA GCATCATCATTACGCGTTTTCTTTCCAGTGACGGAAAATATAAACAGATG GTTGATGAAGTCGGAGAAGCTCGCAAGGCCGCAGCCAGGCAGATGGAGGA AGCGGCAGACGCTGGCTCGCCCACTATTTTTGACAAAATAGCGAAAGGGG AGATCCACACCGATTTTATTTACGAAGACGATCTATGCGTCGCCTTCAAA GACTTGAGCCCCCAGGGCCCCGTGCATTTCTTGGTAATTCCCAAGGAGAA GCAAGGTTTGACGCGTTTGAGCAAGGCAACGGAGGGGAATAAGGCTTTGT TGGGGCATCTGCTTTACGTCGCGCAGCATGTGGCGAAGGAGCAGGGTTTA GTGCCAGGAGGCTTTCGCGTGGTGATCAACGATGGAGTTGATGGGAGTCA GTCAGTGTATCATTTGCACTTACATGTGATCGGTGGGCGACAGGTAAGTA GATATTGA back to top
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