NO01G01640, NO01G01640 (gene) Nannochloropsis oceanica

Overview
NameNO01G01640
Unique NameNO01G01640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1100
Alignment locationchr1:416294..417393 -

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Properties
Property NameValue
DescriptionDna-directed rna polymerases ii 24 kDa
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:416294..417393 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0016740transferase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR036710RNA_pol_Rpb5_N_sf
IPR035913RPB5-like
IPR000783RNA_pol_subH/Rpb5_C
IPR005571RNA_pol_Rpb5_N
Homology
BLAST of NO01G01640 vs. NCBI_GenBank
Match: EWM29051.1 (dna-directed rna polymerases ii 24 kda [Nannochloropsis gaditana])

HSP 1 Score: 392.5 bits (1007), Expect = 8.100e-106
Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = 0
Query:    1 MRLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 208
            MRL+RIRKTVLKML KRGYNVLEQTLEATF SFSDDVARISLENNNCTAREACTINVGKIDDA+DVVFVFFSDDEKGLGTKPIQKYVERLLQAGS+CGII+YRNNITAIAKKLLQ GAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV
Sbjct:   11 MRLFRIRKTVLKMLTKRGYNVLEQTLEATFSSFSDDVARISLENNNCTAREACTINVGKIDDAADVVFVFFSDDEKGLGTKPIQKYVERLLQAGSSCGIIIYRNNITAIAKKLLQPGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 217          
BLAST of NO01G01640 vs. NCBI_GenBank
Match: CBJ48715.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 197.2 bits (500), Expect = 5.000e-47
Identity = 106/207 (51.21%), Postives = 148/207 (71.50%), Query Frame = 0
Query:    2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQ-AGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 208
            ++YRIR+T +KML KRGYNVL++ +  T ++F   + +   E N    R   T+ V K+DD  D +FVFF DDEK +G KPI+ Y E++L+      IIV +  IT  A+  +Q   A   V++E FK++EL++DITEHTLVPEH VL+ +QKAE+L RYKLK++QLP+IQS DP+AR++G+Q+G V KI R SETAGRY+TYR+C+
Sbjct:   14 KIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAF---LQQYGPEPN----RHDLTLLVEKVDDPMDQIFVFFPDDEK-VGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 212          
BLAST of NO01G01640 vs. NCBI_GenBank
Match: XP_008610822.1 (DNA-directed RNA polymerase I, II, and III subunit RPABC1 [Saprolegnia diclina VS20] >XP_012199112.1 hypothetical protein SPRG_05117 [Saprolegnia parasitica CBS 223.65] >EQC36060.1 DNA-directed RNA polymerase I, II, and III subunit RPABC1 [Saprolegnia diclina VS20] >KDO29927.1 hypothetical protein SPRG_05117 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 193.0 bits (489), Expect = 9.400e-46
Identity = 110/203 (54.19%), Postives = 138/203 (67.98%), Query Frame = 0
Query:    2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYR 205
            RLYR+RKTV+KMLA RGY V +  L+ T   F+        EN     RE  TI V K+DD SD +FVF+ DD K +G KPI+ Y  R+        I++ ++ IT  AK+ L   A P  K++ FKE+ELLVDITEHTLVP H VLT ++K  +L RYKLK+SQLP++Q +DPIARYYG+ RG VVKIIR SETAGRY+TYR
Sbjct:   12 RLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFG----EN---PTREMMTILVEKVDDPSDNLFVFYPDDAK-VGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMA-PRYKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 205          
BLAST of NO01G01640 vs. NCBI_GenBank
Match: OQS06564.1 (DNA-directed RNA polymerase I, II, and III subunit RPABC1 [Thraustotheca clavata])

HSP 1 Score: 192.2 bits (487), Expect = 1.600e-45
Identity = 109/203 (53.69%), Postives = 138/203 (67.98%), Query Frame = 0
Query:    2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYR 205
            RLYR+RKTV+KML  RGY V ++ L  T   F         EN    +RE  TI V K+DD SD +FVF+ DD K +G KPI+ Y  R+        I++ ++ IT  AK+ L   A P  K++ FKE+ELLVDITEHTLVP H VLT ++K  +L RYKLK+SQLP++Q++DPIARYYG+ RG VVKIIR SETAGRY+TYR
Sbjct:   12 RLYRVRKTVVKMLHNRGYIVSDEELRRTTDEFVQQFG----EN---PSRENLTILVEKVDDPSDNLFVFYPDDAK-VGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMA-PKFKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQASDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 205          
BLAST of NO01G01640 vs. NCBI_GenBank
Match: ORY51713.1 (RPB5 subunit of DNA-directed RNA polymerase [Neocallimastix californiae])

HSP 1 Score: 191.8 bits (486), Expect = 2.100e-45
Identity = 105/206 (50.97%), Postives = 141/206 (68.45%), Query Frame = 0
Query:    2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 208
            +LYR  KT+ +M+  RGY V +  L+ T Q F +  A+  +       RE+ T  V K DD +D + VFF  DE  +G KPI+KY ER+       GIIVY+ N+T  A+K++   A P   +E+F +SELLV+IT H+LVP+HVVLT D+K  +L RYKLKE QLP+IQ +DP+ARYYGL++G VVKI+R SETAGRYITYR+C+
Sbjct:   10 KLYRAYKTIHEMVHDRGYLVSQNELDMTLQQFQEKYAQTGV-----VERESLTFLVQKKDDPADSLLVFFPSDET-VGVKPIRKYTERMSSQEVLKGIIVYQKNLTPSAQKVITQMA-PKYLIEIFSDSELLVNITRHSLVPKHVVLTNDEKKMLLERYKLKELQLPRIQPSDPVARYYGLRKGQVVKILRSSETAGRYITYRLCI 208          
BLAST of NO01G01640 vs. NCBI_GenBank
Match: GAY01619.1 (Hypothetical protein PINS_009447 [Pythium insidiosum])

HSP 1 Score: 191.4 bits (485), Expect = 2.700e-45
Identity = 110/203 (54.19%), Postives = 136/203 (67.00%), Query Frame = 0
Query:    2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYR 205
            RLYR+RKTV+KML  RGY V E  L  T +SF        ++  +   RE  TI V KIDD SD +FVFF +D K +G KPI+ Y  R+        I+V +  IT  A++ L   A P  K+E FKE+ELLVDITEHTLVP H VL  D+KA +L RY++K+SQLP++Q  DPIARYYG+ RG VVKIIR SETAGRY+TYR
Sbjct:  688 RLYRVRKTVVKMLHNRGYIVSENELVMTPESF-------QMQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTK-VGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMA-PRYKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 881          
BLAST of NO01G01640 vs. NCBI_GenBank
Match: ORY81129.1 (RPB5 subunit of DNA-directed RNA polymerase [Neocallimastix californiae])

HSP 1 Score: 191.0 bits (484), Expect = 3.600e-45
Identity = 105/206 (50.97%), Postives = 141/206 (68.45%), Query Frame = 0
Query:    2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 208
            +LYR  KT+ +M+  RGY V +  L+ T Q F +  A+  +       RE+ T  V K DD +D + VFF  DE  +G KPI+KY ER+       GIIVY+ N+T  A+K++   A P   +E+F +SELLV+IT H+LVP+HVVLT D+K  +L RYKLKE QLP+IQ +DP+ARYYGL++G VVKI+R SETAGRYITYR+C+
Sbjct:   10 KLYRAYKTIHEMVHDRGYLVSQNELDMTLQQFQEKYAQTGV-----VERESLTFLVQKKDDPADSLLVFFPADET-VGVKPIRKYTERMSSQEVLKGIIVYQKNLTPSAQKVITQMA-PKYLIEIFSDSELLVNITRHSLVPKHVVLTNDEKKMLLERYKLKELQLPRIQPSDPVARYYGLRKGQVVKILRSSETAGRYITYRLCI 208          
BLAST of NO01G01640 vs. NCBI_GenBank
Match: ORX75465.1 (RPB5 subunit of DNA-directed RNA polymerase [Anaeromyces robustus])

HSP 1 Score: 189.1 bits (479), Expect = 1.400e-44
Identity = 105/206 (50.97%), Postives = 140/206 (67.96%), Query Frame = 0
Query:    2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 208
            +LYR  KT+ +M+  RGY V +  L+ T Q F D  A      +    RE+ T  V K DD +D + VFF  DE  +G KPI+KY ER+       GIIVY+ N+T  A+K++   A P   +E+F +SELLV+IT H+LVP+HVVLT ++K  +L RYKLKE QLP+IQ +DP+ARYYGL++G VVKI+R SETAGRYITYR+C+
Sbjct:   10 KLYRAYKTIHEMVHDRGYLVSQTELDMTLQQFQDKYA-----PSGVVERESLTFLVQKKDDPADSLLVFFPADET-VGVKPIRKYTERMSSQEVLKGIIVYQKNLTPSAQKVITQMA-PKYLIEIFSDSELLVNITRHSLVPKHVVLTNEEKKMLLERYKLKELQLPRIQPSDPVARYYGLRKGQVVKILRSSETAGRYITYRLCI 208          
BLAST of NO01G01640 vs. NCBI_GenBank
Match: XP_008873597.1 (hypothetical protein H310_09332 [Aphanomyces invadans] >ETV98036.1 hypothetical protein H310_09332 [Aphanomyces invadans])

HSP 1 Score: 188.3 bits (477), Expect = 2.300e-44
Identity = 105/203 (51.72%), Postives = 139/203 (68.47%), Query Frame = 0
Query:    2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYR 205
            +L+R+RKTV+KML  RGY V E+ L  T + F+        EN     R+  TI V K+DD SD +FVF+ +D K +G KPI+ Y  R+        I++ ++ IT  AK+ L   A P  K++ FKE+ELLVDITEHTLVP H VLT ++K  +L RYKLK++QLP++Q++DPIARYYG+ RG VVKIIR SETAGRY+TYR
Sbjct:    9 KLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFTAQFG----EN---PTRDTMTILVEKVDDPSDNLFVFYPEDPK-VGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMA-PRYKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMSRGQVVKIIRPSETAGRYVTYR 202          
BLAST of NO01G01640 vs. NCBI_GenBank
Match: OQR92297.1 (DNA-directed RNA polymerase I, II, and III subunit RPABC1 [Achlya hypogyna])

HSP 1 Score: 188.0 bits (476), Expect = 3.000e-44
Identity = 107/203 (52.71%), Postives = 137/203 (67.49%), Query Frame = 0
Query:    2 RLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYR 205
            RLYR+RKTV+KML  RGY V +  L+ T   F+        EN     RE  TI V K+DD SD +FVF+ +D K +G KPI+ Y  R+        I++ ++ IT  AK+ L   A P  K++ FKE+ELLVDITEHTLVP H VL+ ++K  +L RYKLK+SQLP++Q +DPIARYYG+ RG VVKIIR SETAGRY+TYR
Sbjct:   12 RLYRVRKTVVKMLHNRGYIVSDDELKRTTDGFAAQFG----EN---PTREMMTILVEKVDDPSDNLFVFYPEDAK-VGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMA-PRYKIDHFKETELLVDITEHTLVPVHKVLSREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 205          
The following BLAST results are available for this feature:
BLAST of NO01G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29051.18.100e-10696.62dna-directed rna polymerases ii 24 kda [Nannochlor... [more]
CBJ48715.15.000e-4751.21conserved unknown protein [Ectocarpus siliculosus][more]
XP_008610822.19.400e-4654.19DNA-directed RNA polymerase I, II, and III subunit... [more]
OQS06564.11.600e-4553.69DNA-directed RNA polymerase I, II, and III subunit... [more]
ORY51713.12.100e-4550.97RPB5 subunit of DNA-directed RNA polymerase [Neoca... [more]
GAY01619.12.700e-4554.19Hypothetical protein PINS_009447 [Pythium insidios... [more]
ORY81129.13.600e-4550.97RPB5 subunit of DNA-directed RNA polymerase [Neoca... [more]
ORX75465.11.400e-4450.97RPB5 subunit of DNA-directed RNA polymerase [Anaer... [more]
XP_008873597.12.300e-4451.72hypothetical protein H310_09332 [Aphanomyces invad... [more]
OQR92297.13.000e-4452.71DNA-directed RNA polymerase I, II, and III subunit... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008190NSK008190Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01640.1NO01G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576351gene_142Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g50gene1525Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01640.1NO01G01640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01640 ID=NO01G01640|Name=NO01G01640|organism=Nannochloropsis oceanica|type=gene|length=1100bp
ATGCGGCTCTACCGCATCCGTAAGACCGTCCTCAAGATGCTTGCCAAGCG
CGGGTATAACGTGCTTGAACAAACTCTGGAAGCCACCTTCCAATCTTTCT
CTGACGACGTTGCGCGGATCTCCCTTGAAAACAACAATTGTACGGCCCGG
GAGGCGTGTACGATCAACGTTGGCAAGATTGACGATGCTTCCGATGTGGT
GTTTGTCTTTTTTTCGGATGATGAGAAGgtaagatgtggagagaaggaag
ggaaaagtggagggagtttatatacttaattaatcgtcttcctcccctag
tattattgtttacactttccaaataaaggtggcttaagtattcactcact
gctcctcctcctcccttcttccctccccattcttcctttattttttgcat
caatcacaagGGCCTAGGCACCAAGCCCATTCAGAAGTATGTCGAGCGCC
TGTTGCAAGCCGGTTCGAATTGCGGTATCATCGTCTACCGGAATAATATA
ACGGCCATCGCCAAAAAGCTCCTGCAAGCGGGGGCAATCCCAGGGGTGAA
GCTCGAGGTGTTCAAGgtgagttgaataaaagatgtatgtgcttgttaat
ttttctcgcattttcgtgtttctttcaaattgttcgcagcgtgcgtcggc
tttatgtacgctctcgctcactcacacaacctttcccttctgtggcaatc
tggtgtccttgtagatatcactgcgcacactattattccttaacacggca
tcctcatgcccgatcgcatttccagagctctttggtcacattcttatcaa
attaccctctctccttccttcccacccatcctcccctccccccctacctc
cccttcccagGAATCGGAGCTCCTGGTCGACATTACCGAGCACACCCTCG
TTCCTGAACATGTCGTCCTTACACCCGACCAAAAAGCAGAGGTTTTGGGT
CGGTACAAATTAAAGGAAAGTCAACTCCCCAAGATCCAATCAGCTGACCC
GATTGCGCGTTATTATGGCTTACAGCGAGGGACGGTGGTGAAGATAATTC
GATTGTCTGAGACAGCGGGAAGGTACATCACGTATCGGGTATGTGTATGA
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protein sequence of NO01G01640.1

>NO01G01640.1-protein ID=NO01G01640.1-protein|Name=NO01G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MRLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAR
EACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGII
VYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTP
DQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRY
ITYRVCV*
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Synonyms
Publications