NO01G01640.1, NO01G01640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01640.1
Unique NameNO01G01640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length624
Alignment locationchr1:416294..417393 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:416294..417393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01640.1 vs.
Match: EWM29051.1 (dna-directed rna polymerases ii 24 kda [Nannochloropsis gaditana])

HSP 1 Score: 392.5 bits (1007), Expect = 8.100e-106
Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = 0 
Query:    1 MRLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAREACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGIIVYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 208
            MRL+RIRKTVLKML KRGYNVLEQTLEATF SFSDDVARISLENNNCTAREACTINVGKIDDA+DVVFVFFSDDEKGLGTKPIQKYVERLLQAGS+CGII+YRNNITAIAKKLLQ GAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV
Sbjct:   11 MRLFRIRKTVLKMLTKRGYNVLEQTLEATFSSFSDDVARISLENNNCTAREACTINVGKIDDAADVVFVFFSDDEKGLGTKPIQKYVERLLQAGSSCGIIIYRNNITAIAKKLLQPGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTPDQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRYITYRVCV 217
The following BLAST results are available for this feature:
BLAST of NO01G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29051.18.100e-10696.62dna-directed rna polymerases ii 24 kda [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01640NO01G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01640.1NO01G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01640.1.cds1NO01G01640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01640.1.cds2NO01G01640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01640.1.cds3NO01G01640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01640.1 ID=NO01G01640.1|Name=NO01G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
ATGCGGCTCTACCGCATCCGTAAGACCGTCCTCAAGATGCTTGCCAAGCG
CGGGTATAACGTGCTTGAACAAACTCTGGAAGCCACCTTCCAATCTTTCT
CTGACGACGTTGCGCGGATCTCCCTTGAAAACAACAATTGTACGGCCCGG
GAGGCGTGTACGATCAACGTTGGCAAGATTGACGATGCTTCCGATGTGGT
GTTTGTCTTTTTTTCGGATGATGAGAAGGGCCTAGGCACCAAGCCCATTC
AGAAGTATGTCGAGCGCCTGTTGCAAGCCGGTTCGAATTGCGGTATCATC
GTCTACCGGAATAATATAACGGCCATCGCCAAAAAGCTCCTGCAAGCGGG
GGCAATCCCAGGGGTGAAGCTCGAGGTGTTCAAGGAATCGGAGCTCCTGG
TCGACATTACCGAGCACACCCTCGTTCCTGAACATGTCGTCCTTACACCC
GACCAAAAAGCAGAGGTTTTGGGTCGGTACAAATTAAAGGAAAGTCAACT
CCCCAAGATCCAATCAGCTGACCCGATTGCGCGTTATTATGGCTTACAGC
GAGGGACGGTGGTGAAGATAATTCGATTGTCTGAGACAGCGGGAAGGTAC
ATCACGTATCGGGTATGTGTATGA
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protein sequence of NO01G01640.1

>NO01G01640.1-protein ID=NO01G01640.1-protein|Name=NO01G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MRLYRIRKTVLKMLAKRGYNVLEQTLEATFQSFSDDVARISLENNNCTAR
EACTINVGKIDDASDVVFVFFSDDEKGLGTKPIQKYVERLLQAGSNCGII
VYRNNITAIAKKLLQAGAIPGVKLEVFKESELLVDITEHTLVPEHVVLTP
DQKAEVLGRYKLKESQLPKIQSADPIARYYGLQRGTVVKIIRLSETAGRY
ITYRVCV*
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mRNA from alignment at chr1:416294..417393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01640.1 ID=NO01G01640.1|Name=NO01G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1100bp|location=Sequence derived from alignment at chr1:416294..417393- (Nannochloropsis oceanica)
ATGCGGCTCTACCGCATCCGTAAGACCGTCCTCAAGATGCTTGCCAAGCG
CGGGTATAACGTGCTTGAACAAACTCTGGAAGCCACCTTCCAATCTTTCT
CTGACGACGTTGCGCGGATCTCCCTTGAAAACAACAATTGTACGGCCCGG
GAGGCGTGTACGATCAACGTTGGCAAGATTGACGATGCTTCCGATGTGGT
GTTTGTCTTTTTTTCGGATGATGAGAAGGTAAGATGTGGAGAGAAGGAAG
GGAAAAGTGGAGGGAGTTTATATACTTAATTAATCGTCTTCCTCCCCTAG
TATTATTGTTTACACTTTCCAAATAAAGGTGGCTTAAGTATTCACTCACT
GCTCCTCCTCCTCCCTTCTTCCCTCCCCATTCTTCCTTTATTTTTTGCAT
CAATCACAAGGGCCTAGGCACCAAGCCCATTCAGAAGTATGTCGAGCGCC
TGTTGCAAGCCGGTTCGAATTGCGGTATCATCGTCTACCGGAATAATATA
ACGGCCATCGCCAAAAAGCTCCTGCAAGCGGGGGCAATCCCAGGGGTGAA
GCTCGAGGTGTTCAAGGTGAGTTGAATAAAAGATGTATGTGCTTGTTAAT
TTTTCTCGCATTTTCGTGTTTCTTTCAAATTGTTCGCAGCGTGCGTCGGC
TTTATGTACGCTCTCGCTCACTCACACAACCTTTCCCTTCTGTGGCAATC
TGGTGTCCTTGTAGATATCACTGCGCACACTATTATTCCTTAACACGGCA
TCCTCATGCCCGATCGCATTTCCAGAGCTCTTTGGTCACATTCTTATCAA
ATTACCCTCTCTCCTTCCTTCCCACCCATCCTCCCCTCCCCCCCTACCTC
CCCTTCCCAGGAATCGGAGCTCCTGGTCGACATTACCGAGCACACCCTCG
TTCCTGAACATGTCGTCCTTACACCCGACCAAAAAGCAGAGGTTTTGGGT
CGGTACAAATTAAAGGAAAGTCAACTCCCCAAGATCCAATCAGCTGACCC
GATTGCGCGTTATTATGGCTTACAGCGAGGGACGGTGGTGAAGATAATTC
GATTGTCTGAGACAGCGGGAAGGTACATCACGTATCGGGTATGTGTATGA
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Coding sequence (CDS) from alignment at chr1:416294..417393-

>NO01G01640.1 ID=NO01G01640.1|Name=NO01G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr1:416294..417393- (Nannochloropsis oceanica)
ATGCGGCTCTACCGCATCCGTAAGACCGTCCTCAAGATGCTTGCCAAGCG
CGGGTATAACGTGCTTGAACAAACTCTGGAAGCCACCTTCCAATCTTTCT
CTGACGACGTTGCGCGGATCTCCCTTGAAAACAACAATTGTACGGCCCGG
GAGGCGTGTACGATCAACGTTGGCAAGATTGACGATGCTTCCGATGTGGT
GTTTGTCTTTTTTTCGGATGATGAGAAGGGCCTAGGCACCAAGCCCATTC
AGAAGTATGTCGAGCGCCTGTTGCAAGCCGGTTCGAATTGCGGTATCATC
GTCTACCGGAATAATATAACGGCCATCGCCAAAAAGCTCCTGCAAGCGGG
GGCAATCCCAGGGGTGAAGCTCGAGGTGTTCAAGGAATCGGAGCTCCTGG
TCGACATTACCGAGCACACCCTCGTTCCTGAACATGTCGTCCTTACACCC
GACCAAAAAGCAGAGGTTTTGGGTCGGTACAAATTAAAGGAAAGTCAACT
CCCCAAGATCCAATCAGCTGACCCGATTGCGCGTTATTATGGCTTACAGC
GAGGGACGGTGGTGAAGATAATTCGATTGTCTGAGACAGCGGGAAGGTAC
ATCACGTATCGGGTATGTGTATGA
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Synonyms
Publications