NO01G01440, NO01G01440 (gene) Nannochloropsis oceanica

Overview
NameNO01G01440
Unique NameNO01G01440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1694
Alignment locationchr1:368406..370099 -

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription factor iws1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:368406..370099 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR035441TFIIS/LEDGF_dom_sf
IPR017923TFIIS_N
Homology
BLAST of NO01G01440 vs. NCBI_GenBank
Match: EWM29070.1 (transcription factor iws1 [Nannochloropsis gaditana])

HSP 1 Score: 437.2 bits (1123), Expect = 7.100e-119
Identity = 234/283 (82.69%), Postives = 250/283 (88.34%), Query Frame = 0
Query:  234 RVGRELTVVEQALASFKRNRSQKLPDKQVQEMTQRLIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEVLDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLLTARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEMEGXXXXXXXXXXANAGGGGFIMSTTARGVVIPIRTGFNFKKVALTFREEFDRGQGKEDEAMEVNEREPGREGGAESRTSRVRKALKDMGRGGSKKLRHESVRHGH 517
            R  RELT VEQALASFKRNR QKLPD QVQEMTQ LI +ME AAKEDRQA++ ++PA QKLK LTEVLDLL+SKHLQGALVDNGQVLGLI+ WLQPLPDKSLPL+AVRTP+IDYL+TARVEVHRLKESG+GRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEMEG             G GGFIMSTT+RGVVIPIRTGFNFKKVALTFREEFDRGQGKEDEAMEV EREP    G+ESRT+RVRKALKDMGR G KKLRHESV+HG+
Sbjct:  225 RAARELTAVEQALASFKRNRIQKLPDAQVQEMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVTARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEMEG----RQGPAEREGGEGGFIMSTTSRGVVIPIRTGFNFKKVALTFREEFDRGQGKEDEAMEVAEREP--RDGSESRTNRVRKALKDMGRAGGKKLRHESVQHGN 501          
BLAST of NO01G01440 vs. NCBI_GenBank
Match: XP_005856048.1 (iws1 family protein, partial [Nannochloropsis gaditana CCMP526] >EKU20314.1 iws1 family protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 255.8 bits (652), Expect = 2.900e-64
Identity = 131/154 (85.06%), Postives = 142/154 (92.21%), Query Frame = 0
Query:  234 RVGRELTVVEQALASFKRNRSQKLPDKQVQEMTQRLIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEVLDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLLTARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEI 388
            R  RELT VEQALASFKRNR QKLPD QVQEMTQ LI +ME AAKEDRQA++ ++PA QKLK LTEVLDLL+SKHLQGALVDNGQVLGLI+ WLQPLPDKSLPL+AVRTP+IDYL+TARVEVHRLKESG+GRVIQQLKKHPEETVENKAKLTEI
Sbjct:  230 RAARELTAVEQALASFKRNRIQKLPDAQVQEMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVTARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEI 383          
BLAST of NO01G01440 vs. NCBI_GenBank
Match: KHN79969.1 (IWS1-like protein [Toxocara canis])

HSP 1 Score: 115.5 bits (288), Expect = 4.800e-22
Identity = 65/150 (43.33%), Postives = 90/150 (60.00%), Query Frame = 0
Query:  264 EMTQRLIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEVLDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLLT-ARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEME 413
            E  + L D M+ AAK+DR + M  KPA+QK K L  V  +L    L  A++DNG +L  + +WL PLPDKSLP   +RT L+  L   +R+E   LK+SG+GR +  L KHP+ET ENKA    ++  W+R I    T  +S + EE M+
Sbjct:  221 EQIRMLTDAMKAAAKDDRHSNMERKPALQKRKMLRYVKAMLIKHDLMEAIIDNG-MLSAVSEWLAPLPDKSLPALEIRTDLLKILQDYSRLEQGTLKQSGLGRAVMLLYKHPKETKENKALAHSLISEWARPIFQLDTDFRSMSREERMQ 369          
BLAST of NO01G01440 vs. NCBI_GenBank
Match: XP_020301464.1 (IWS1 family protein [Loa loa] >EFO16866.2 IWS1 family protein [Loa loa])

HSP 1 Score: 114.4 bits (285), Expect = 1.100e-21
Identity = 62/150 (41.33%), Postives = 91/150 (60.67%), Query Frame = 0
Query:  264 EMTQRLIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEVLDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLLT-ARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEME 413
            +  + LID M+ AAK+DR + M  +PA+QK K L  V  +L    L  A++DNG ++ +I +WL PLPDKSLP   +RT L+  L   +R+E   LK+SG+GR +  L KHP ET ENK     ++ +W+R I    T  +S T +E ++
Sbjct:  357 DQIKMLIDAMKAAAKDDRHSNMERRPALQKRKMLPHVKAMLIKHDLMEAVIDNG-MMNVISEWLAPLPDKSLPALEIRTDLLKILQDFSRLEPGTLKQSGLGRAVMLLYKHPRETKENKTLAARLISDWARPIFQLDTDFRSMTKDERVQ 505          
BLAST of NO01G01440 vs. NCBI_GenBank
Match: XP_001894111.1 (IWS1 C-terminus family protein [Brugia malayi] >CDQ04693.1 Bm3332, isoform c [Brugia malayi])

HSP 1 Score: 114.0 bits (284), Expect = 1.400e-21
Identity = 62/150 (41.33%), Postives = 92/150 (61.33%), Query Frame = 0
Query:  264 EMTQRLIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEVLDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLLT-ARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEME 413
            +  + LID M+ AAK+DR + +  +PA+QK K L  V  +L    L  A++DNG ++ +I +WL PLPDKSLP   +RT L+  L   +R+E   LK+SG+GR +  L KHP ET ENKA    ++ +W+R I    T  +S T +E ++
Sbjct:  262 DQIKMLIDAMKSAAKDDRHSNIERRPALQKRKMLPHVKAMLIKHDLMEAIIDNG-MMNVISEWLAPLPDKSLPALEIRTDLLKILQDFSRLEPGTLKQSGLGRAVMLLYKHPRETKENKALAARLISDWARPIFQLDTDFRSMTKDERIQ 410          
BLAST of NO01G01440 vs. NCBI_GenBank
Match: CDQ04694.1 (Bm3332, isoform f [Brugia malayi])

HSP 1 Score: 114.0 bits (284), Expect = 1.400e-21
Identity = 62/150 (41.33%), Postives = 92/150 (61.33%), Query Frame = 0
Query:  264 EMTQRLIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEVLDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLLT-ARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEME 413
            +  + LID M+ AAK+DR + +  +PA+QK K L  V  +L    L  A++DNG ++ +I +WL PLPDKSLP   +RT L+  L   +R+E   LK+SG+GR +  L KHP ET ENKA    ++ +W+R I    T  +S T +E ++
Sbjct:  158 DQIKMLIDAMKSAAKDDRHSNIERRPALQKRKMLPHVKAMLIKHDLMEAIIDNG-MMNVISEWLAPLPDKSLPALEIRTDLLKILQDFSRLEPGTLKQSGLGRAVMLLYKHPRETKENKALAARLISDWARPIFQLDTDFRSMTKDERIQ 306          
BLAST of NO01G01440 vs. NCBI_GenBank
Match: CDQ04695.1 (Bm3332, isoform g [Brugia malayi])

HSP 1 Score: 114.0 bits (284), Expect = 1.400e-21
Identity = 62/150 (41.33%), Postives = 92/150 (61.33%), Query Frame = 0
Query:  264 EMTQRLIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEVLDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLLT-ARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEME 413
            +  + LID M+ AAK+DR + +  +PA+QK K L  V  +L    L  A++DNG ++ +I +WL PLPDKSLP   +RT L+  L   +R+E   LK+SG+GR +  L KHP ET ENKA    ++ +W+R I    T  +S T +E ++
Sbjct:  123 DQIKMLIDAMKSAAKDDRHSNIERRPALQKRKMLPHVKAMLIKHDLMEAIIDNG-MMNVISEWLAPLPDKSLPALEIRTDLLKILQDFSRLEPGTLKQSGLGRAVMLLYKHPRETKENKALAARLISDWARPIFQLDTDFRSMTKDERIQ 271          
BLAST of NO01G01440 vs. NCBI_GenBank
Match: KHJ87823.1 (IWS1 protein, partial [Oesophagostomum dentatum])

HSP 1 Score: 106.3 bits (264), Expect = 2.900e-19
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 0
Query:  269 LIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEVLDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLL-TARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEME 413
            ++  M+ AAKEDR +    KPA++K K L EV  +L    +  A++D G V+  + +WL PLPDKSLP   +RT L+  L    R++   LK+SG+GR +  L KHP ET ENKA   +I+  WSR I    T  +S + EE ++
Sbjct:  247 MVTAMKNAAKEDRHSNTERKPALKKRKMLAEVKIMLLRVEMLEAMIDGG-VMSAVSEWLAPLPDKSLPALEIRTELLKILQGFGRLDQGILKQSGLGRAVMLLYKHPRETKENKAMAAQIIREWSRPIFQLDTDFRSVSREERVQ 390          
BLAST of NO01G01440 vs. NCBI_GenBank
Match: KHJ88283.1 (IWS1 protein, partial [Oesophagostomum dentatum])

HSP 1 Score: 106.3 bits (264), Expect = 2.900e-19
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 0
Query:  269 LIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEVLDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLL-TARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEME 413
            ++  M+ AAKEDR +    KPA++K K L EV  +L    +  A++D G V+  + +WL PLPDKSLP   +RT L+  L    R++   LK+SG+GR +  L KHP ET ENKA   +I+  WSR I    T  +S + EE ++
Sbjct:   33 MVTAMKNAAKEDRHSNTERKPALKKRKMLAEVKIMLLRVEMLEAMIDGG-VMSAVSEWLAPLPDKSLPALEIRTELLKILQGFGRLDQGILKQSGLGRAVMLLYKHPRETKENKAMAAQIIREWSRPIFQLDTDFRSVSREERVQ 176          
BLAST of NO01G01440 vs. NCBI_GenBank
Match: XP_008610542.1 (hypothetical protein SDRG_06539 [Saprolegnia diclina VS20] >EQC35780.1 hypothetical protein SDRG_06539 [Saprolegnia diclina VS20])

HSP 1 Score: 105.5 bits (262), Expect = 4.900e-19
Identity = 63/182 (34.62%), Postives = 103/182 (56.59%), Query Frame = 0
Query:  234 RVGRELTVVEQALASFKRNRSQ---KLPDKQVQEMTQRLIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEVLDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLLTARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEME 413
            R  REL   ++ +   K  R++    L  + ++ +TQ L+  M+ A  +D QAM  ++PA++KLK +   L +++   LQ  L+D   +LG+IK+W+QPL + +LP  ++R+ ++D      +    LK SG G+V+  L KHP+ET ENK     ++D WSR +  K T   S+  E E E
Sbjct:  145 RQQRELDFFDETMKGLKSGRAKSKMSLSQQDMENITQELLYRMDKACSDDMQAMDEHRPALEKLKFVDNALTMMRKVQLQPMLLD-FDLLGIIKKWIQPLENGALPSLSLRSKMLDMCQRMPIYKEHLKRSGFGKVVMSLWKHPDETPENKELCRLMIDRWSRSVFSK-TLDYSKLGEYEAE 324          
The following BLAST results are available for this feature:
BLAST of NO01G01440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29070.17.100e-11982.69transcription factor iws1 [Nannochloropsis gaditan... [more]
XP_005856048.12.900e-6485.06iws1 family protein, partial [Nannochloropsis gadi... [more]
KHN79969.14.800e-2243.33IWS1-like protein [Toxocara canis][more]
XP_020301464.11.100e-2141.33IWS1 family protein [Loa loa] >EFO16866.2 IWS1 fam... [more]
XP_001894111.11.400e-2141.33IWS1 C-terminus family protein [Brugia malayi] >CD... [more]
CDQ04694.11.400e-2141.33Bm3332, isoform f [Brugia malayi][more]
CDQ04695.11.400e-2141.33Bm3332, isoform g [Brugia malayi][more]
KHJ87823.12.900e-1941.38IWS1 protein, partial [Oesophagostomum dentatum][more]
KHJ88283.12.900e-1941.38IWS1 protein, partial [Oesophagostomum dentatum][more]
XP_008610542.14.900e-1934.62hypothetical protein SDRG_06539 [Saprolegnia dicli... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01440.1NO01G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576289gene_120Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01440.1NO01G01440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01440 ID=NO01G01440|Name=NO01G01440|organism=Nannochloropsis oceanica|type=gene|length=1694bp
ACCACAGAACAAGAGGGACTCGCTCCGTGTGCACTGCAGCCCTTCGTCAG
TCTGTCCCACCACCCAGCACAGACAGCATTATCACCATCGACATCCACGT
CGCTTAGGCCACACGACCAAGATGGCAGCCAATCAAGACTATAACAACCT
GTTTGGGAGCTCCGACGAGGAGAGCAGTGGTGAGGAAGAGGCTGAAGAGG
TGGAGCAGCAGCGACAGAAGCCCGCGACAAACTCAGCGCCCGCTCAAGCG
GCTGCCTCTTCCGCCGCGGCTGCAGGCGGGGACGCCAGCAGTAGCAGTGA
AGACGAGAGCAGTGACGACGAGGACGAACGTCTCTCGGCCAAGAAGCGTT
TACAGAAAAAAGGCGTGCCCTTAGCATCTTTGTCGTCGGACGAAAGCGAG
AGCGAGGATGAGGAAGCAGCAGCAGCAGCAACCGCTTCCCGGCCTCCCCC
CAAGGCCCGCACCACAGGCAACGATGCCTTGAAGCGAGCCACGGCTGACT
TTGACGACGAGGAAGAGGAAGAAGAGGACCACGCGCGTAAATCCCAGACA
CTCCCAGATTTGAGCAGCGATGGGAGCAGTAGCAGCAGCAGTAGTAGTGG
GGAGAGTGACTCGTCGGATGATGAGGGGGACTCACGCCGACGGAAGAAGG
GGGCGCTCAAGAAGAAGTCGATGAAGACGAAGAGCAACATGATTAAGAAA
AAGATCAAGGCCTCTAAGTCTAGGAAGGAGCGGGTTGGTCGCGAAGACGG
AGACGGGGAGGAGGACGACGGTGCCGGGAGGAGCAGCAGCCAAGGCGGTG
GAGGAGGGGGTGATGCTCGTCGGGTCGGACGAGAACTGACGGTGGTGGAA
CAGGCATTGGCGTCTTTCAAGCGGAATCGGTCGCAGAAGTTGCCGGATAA
ACAGGTGCAAGAAATGACCCAGCGATTGATTGATGTGATGGAGGTGGCGG
CAAAGGAAGACAGGCAGGCCATGATGCACAACAAGCCCGCGATACAGAAA
CTCAAGAGTTTGACCGAGGTTCTGGATTTGTTGAAGAGCAAGCATCTACA
GGGTGCCTTGGTGGATAATGGGCAGGTGCTGGGCTTGATCAAGCAGTGGC
TGCAACCGCTGCCGGATAAGAGCTTGCCATTGTTCGCTGTGCGCACGCCG
CTGATTGATTATCTGCTGACTGCACGGGTGGAGGTGCACCGGCTCAAGGA
GAGCGGAGTAGGCCGCGTCATCCAGCAGCTGAAAAAACACCCGGAGGAGA
CGGTGGAGAACAAGGCGAAGCTTACGGAGATCGTCGATAATTGGTCCCGC
CTTATCACGGGCAAGGGCACCACCTTGAAGAGCCGGACGAGCGAGGAGGA
GATGGAGGGCCGGGAGGCACGGCAGGCCCAGCAGGCCAAGGCAAACGCAG
GAGGAGGGGGCTTTATCATGTCGACGACGGCGCGGGGGGTGGTGATCCCG
ATCCGGACGGGCTTCAACTTCAAGAAGGTGGCCTTGACATTTCGGGAGGA
ATTTGATAGGGGGCAGGGGAAGGAGGACGAGGCTATGGAGGTGAACGAGC
GGGAGCCTGGTAGGGAAGGGGGGGCAGAGAGTCGGACCAGCCGGGTACGA
AAGGCTTTGAAGGACATGGGGAGGGGGGGTAGCAAAAAGTTGAGGCATGA
GAGCGTGCGGCATGGCCATTAGAGAGAAAAGAAGGGTGGGAGGG
back to top

protein sequence of NO01G01440.1

>NO01G01440.1-protein ID=NO01G01440.1-protein|Name=NO01G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MAANQDYNNLFGSSDEESSGEEEAEEVEQQRQKPATNSAPAQAAASSAAA
AGGDASSSSEDESSDDEDERLSAKKRLQKKGVPLASLSSDESESEDEEAA
AAATASRPPPKARTTGNDALKRATADFDDEEEEEEDHARKSQTLPDLSSD
GSSSSSSSSGESDSSDDEGDSRRRKKGALKKKSMKTKSNMIKKKIKASKS
RKERVGREDGDGEEDDGAGRSSSQGGGGGGDARRVGRELTVVEQALASFK
RNRSQKLPDKQVQEMTQRLIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEV
LDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLLT
ARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGT
TLKSRTSEEEMEGREARQAQQAKANAGGGGFIMSTTARGVVIPIRTGFNF
KKVALTFREEFDRGQGKEDEAMEVNEREPGREGGAESRTSRVRKALKDMG
RGGSKKLRHESVRHGH*
back to top
Synonyms
Publications