NO01G01440.1, NO01G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01440.1
Unique NameNO01G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1694
Alignment locationchr1:368406..370099 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:368406..370099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01440.1 vs.
Match: EWM29070.1 (transcription factor iws1 [Nannochloropsis gaditana])

HSP 1 Score: 572.8 bits (1475), Expect = 1.100e-159
Identity = 357/521 (68.52%), Postives = 410/521 (78.69%), Query Frame = 0 
Query:    2 AANQDYNNLFGSSDEESSGEEEAEEVEQQRQKPATNSAPAQAAASSA--AAAGGDASSSSEDESSDDEDERLSAKKRLQKKGVPLASLSSDESESEDEEAAAAATASRPPPKARTTGNDALKRATADFDDEEEEEEDHARKSQTLPDLSSDGSSSSSSSSGESDSSDDEGDSRRRKKGALKKK-SMKTKSNMIKKKIKASKSRKERVG---REDGDGEEDDGAGRSSSQGGGGGGDARRVGRELTVVEQALASFKRNRSQKLPDKQVQEMTQRLIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEVLDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLLTARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEMEGREARQAQQAKANAGGGGFIMSTTARGVVIPIRTGFNFKKVALTFREEFDRGQGKEDEAMEVNEREPGREGGAESRTSRVRKALKDMGRGGSKKLRHESVRHGH 517
            A+  DY NLFGSSDEES G+E     EQQ+Q  +T +  A + +S+   +A G  +  SS DE S +EDE LSAKKRLQ+KGVPLAS S +ES++E+E         RP  KARTTG++AL+RATADFDDEEEEEE   R+   LPDLSSDG+SSSS S  ES+SSDDEGDSRRRK+GA K+K  +KTK     K +   +  + + G   R+ G G ++DG    ++ G G   + RR  RELT VEQALASFKRNR QKLPD QVQEMTQ LI +ME AAKEDRQA++ ++PA QKLK LTEVLDLL+SKHLQGALVDNGQVLGLI+ WLQPLPDKSLPL+AVRTP+IDYL+TARVEVHRLKESG+GRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEMEGR+      A+   G GGFIMSTT+RGVVIPIRTGFNFKKVALTFREEFDRGQGKEDEAMEV EREP    G+ESRT+RVRKALKDMGR G KKLRHESV+HG+
Sbjct:    3 ASRLDYQNLFGSSDEESDGDEG----EQQQQSTSTAAPKASSGSSTIKPSALGKSSDDSSSDEDSSEEDEHLSAKKRLQQKGVPLASSSDEESDNEEE-----GDVPRPAGKARTTGSEALRRATADFDDEEEEEE--PRRPNVLPDLSSDGNSSSSGS--ESESSDDEGDSRRRKRGAEKRKHRLKTKGKRPSKGVDKGRDGRGKAGKQVRDRGQGADEDG---GAAAGTGAASEPRRAARELTAVEQALASFKRNRIQKLPDAQVQEMTQHLITLMETAAKEDRQALLQHRPATQKLKRLTEVLDLLRSKHLQGALVDNGQVLGLIRLWLQPLPDKSLPLYAVRTPMIDYLVTARVEVHRLKESGIGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGTTLKSRTSEEEMEGRQG----PAEREGGEGGFIMSTTSRGVVIPIRTGFNFKKVALTFREEFDRGQGKEDEAMEVAEREP--RDGSESRTNRVRKALKDMGRAGGKKLRHESVQHGN 501
The following BLAST results are available for this feature:
BLAST of NO01G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29070.11.100e-15968.52transcription factor iws1 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01440NO01G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01440.1NO01G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01440.1.cds1NO01G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01440.1 ID=NO01G01440.1|Name=NO01G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1694bp
ACCACAGAACAAGAGGGACTCGCTCCGTGTGCACTGCAGCCCTTCGTCAG
TCTGTCCCACCACCCAGCACAGACAGCATTATCACCATCGACATCCACGT
CGCTTAGGCCACACGACCAAGATGGCAGCCAATCAAGACTATAACAACCT
GTTTGGGAGCTCCGACGAGGAGAGCAGTGGTGAGGAAGAGGCTGAAGAGG
TGGAGCAGCAGCGACAGAAGCCCGCGACAAACTCAGCGCCCGCTCAAGCG
GCTGCCTCTTCCGCCGCGGCTGCAGGCGGGGACGCCAGCAGTAGCAGTGA
AGACGAGAGCAGTGACGACGAGGACGAACGTCTCTCGGCCAAGAAGCGTT
TACAGAAAAAAGGCGTGCCCTTAGCATCTTTGTCGTCGGACGAAAGCGAG
AGCGAGGATGAGGAAGCAGCAGCAGCAGCAACCGCTTCCCGGCCTCCCCC
CAAGGCCCGCACCACAGGCAACGATGCCTTGAAGCGAGCCACGGCTGACT
TTGACGACGAGGAAGAGGAAGAAGAGGACCACGCGCGTAAATCCCAGACA
CTCCCAGATTTGAGCAGCGATGGGAGCAGTAGCAGCAGCAGTAGTAGTGG
GGAGAGTGACTCGTCGGATGATGAGGGGGACTCACGCCGACGGAAGAAGG
GGGCGCTCAAGAAGAAGTCGATGAAGACGAAGAGCAACATGATTAAGAAA
AAGATCAAGGCCTCTAAGTCTAGGAAGGAGCGGGTTGGTCGCGAAGACGG
AGACGGGGAGGAGGACGACGGTGCCGGGAGGAGCAGCAGCCAAGGCGGTG
GAGGAGGGGGTGATGCTCGTCGGGTCGGACGAGAACTGACGGTGGTGGAA
CAGGCATTGGCGTCTTTCAAGCGGAATCGGTCGCAGAAGTTGCCGGATAA
ACAGGTGCAAGAAATGACCCAGCGATTGATTGATGTGATGGAGGTGGCGG
CAAAGGAAGACAGGCAGGCCATGATGCACAACAAGCCCGCGATACAGAAA
CTCAAGAGTTTGACCGAGGTTCTGGATTTGTTGAAGAGCAAGCATCTACA
GGGTGCCTTGGTGGATAATGGGCAGGTGCTGGGCTTGATCAAGCAGTGGC
TGCAACCGCTGCCGGATAAGAGCTTGCCATTGTTCGCTGTGCGCACGCCG
CTGATTGATTATCTGCTGACTGCACGGGTGGAGGTGCACCGGCTCAAGGA
GAGCGGAGTAGGCCGCGTCATCCAGCAGCTGAAAAAACACCCGGAGGAGA
CGGTGGAGAACAAGGCGAAGCTTACGGAGATCGTCGATAATTGGTCCCGC
CTTATCACGGGCAAGGGCACCACCTTGAAGAGCCGGACGAGCGAGGAGGA
GATGGAGGGCCGGGAGGCACGGCAGGCCCAGCAGGCCAAGGCAAACGCAG
GAGGAGGGGGCTTTATCATGTCGACGACGGCGCGGGGGGTGGTGATCCCG
ATCCGGACGGGCTTCAACTTCAAGAAGGTGGCCTTGACATTTCGGGAGGA
ATTTGATAGGGGGCAGGGGAAGGAGGACGAGGCTATGGAGGTGAACGAGC
GGGAGCCTGGTAGGGAAGGGGGGGCAGAGAGTCGGACCAGCCGGGTACGA
AAGGCTTTGAAGGACATGGGGAGGGGGGGTAGCAAAAAGTTGAGGCATGA
GAGCGTGCGGCATGGCCATTAGAGAGAAAAGAAGGGTGGGAGGG
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protein sequence of NO01G01440.1

>NO01G01440.1-protein ID=NO01G01440.1-protein|Name=NO01G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MAANQDYNNLFGSSDEESSGEEEAEEVEQQRQKPATNSAPAQAAASSAAA
AGGDASSSSEDESSDDEDERLSAKKRLQKKGVPLASLSSDESESEDEEAA
AAATASRPPPKARTTGNDALKRATADFDDEEEEEEDHARKSQTLPDLSSD
GSSSSSSSSGESDSSDDEGDSRRRKKGALKKKSMKTKSNMIKKKIKASKS
RKERVGREDGDGEEDDGAGRSSSQGGGGGGDARRVGRELTVVEQALASFK
RNRSQKLPDKQVQEMTQRLIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEV
LDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLLT
ARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGT
TLKSRTSEEEMEGREARQAQQAKANAGGGGFIMSTTARGVVIPIRTGFNF
KKVALTFREEFDRGQGKEDEAMEVNEREPGREGGAESRTSRVRKALKDMG
RGGSKKLRHESVRHGH*
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mRNA from alignment at chr1:368406..370099-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01440.1 ID=NO01G01440.1|Name=NO01G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1694bp|location=Sequence derived from alignment at chr1:368406..370099- (Nannochloropsis oceanica)
ACCACAGAACAAGAGGGACTCGCTCCGTGTGCACTGCAGCCCTTCGTCAG
TCTGTCCCACCACCCAGCACAGACAGCATTATCACCATCGACATCCACGT
CGCTTAGGCCACACGACCAAGATGGCAGCCAATCAAGACTATAACAACCT
GTTTGGGAGCTCCGACGAGGAGAGCAGTGGTGAGGAAGAGGCTGAAGAGG
TGGAGCAGCAGCGACAGAAGCCCGCGACAAACTCAGCGCCCGCTCAAGCG
GCTGCCTCTTCCGCCGCGGCTGCAGGCGGGGACGCCAGCAGTAGCAGTGA
AGACGAGAGCAGTGACGACGAGGACGAACGTCTCTCGGCCAAGAAGCGTT
TACAGAAAAAAGGCGTGCCCTTAGCATCTTTGTCGTCGGACGAAAGCGAG
AGCGAGGATGAGGAAGCAGCAGCAGCAGCAACCGCTTCCCGGCCTCCCCC
CAAGGCCCGCACCACAGGCAACGATGCCTTGAAGCGAGCCACGGCTGACT
TTGACGACGAGGAAGAGGAAGAAGAGGACCACGCGCGTAAATCCCAGACA
CTCCCAGATTTGAGCAGCGATGGGAGCAGTAGCAGCAGCAGTAGTAGTGG
GGAGAGTGACTCGTCGGATGATGAGGGGGACTCACGCCGACGGAAGAAGG
GGGCGCTCAAGAAGAAGTCGATGAAGACGAAGAGCAACATGATTAAGAAA
AAGATCAAGGCCTCTAAGTCTAGGAAGGAGCGGGTTGGTCGCGAAGACGG
AGACGGGGAGGAGGACGACGGTGCCGGGAGGAGCAGCAGCCAAGGCGGTG
GAGGAGGGGGTGATGCTCGTCGGGTCGGACGAGAACTGACGGTGGTGGAA
CAGGCATTGGCGTCTTTCAAGCGGAATCGGTCGCAGAAGTTGCCGGATAA
ACAGGTGCAAGAAATGACCCAGCGATTGATTGATGTGATGGAGGTGGCGG
CAAAGGAAGACAGGCAGGCCATGATGCACAACAAGCCCGCGATACAGAAA
CTCAAGAGTTTGACCGAGGTTCTGGATTTGTTGAAGAGCAAGCATCTACA
GGGTGCCTTGGTGGATAATGGGCAGGTGCTGGGCTTGATCAAGCAGTGGC
TGCAACCGCTGCCGGATAAGAGCTTGCCATTGTTCGCTGTGCGCACGCCG
CTGATTGATTATCTGCTGACTGCACGGGTGGAGGTGCACCGGCTCAAGGA
GAGCGGAGTAGGCCGCGTCATCCAGCAGCTGAAAAAACACCCGGAGGAGA
CGGTGGAGAACAAGGCGAAGCTTACGGAGATCGTCGATAATTGGTCCCGC
CTTATCACGGGCAAGGGCACCACCTTGAAGAGCCGGACGAGCGAGGAGGA
GATGGAGGGCCGGGAGGCACGGCAGGCCCAGCAGGCCAAGGCAAACGCAG
GAGGAGGGGGCTTTATCATGTCGACGACGGCGCGGGGGGTGGTGATCCCG
ATCCGGACGGGCTTCAACTTCAAGAAGGTGGCCTTGACATTTCGGGAGGA
ATTTGATAGGGGGCAGGGGAAGGAGGACGAGGCTATGGAGGTGAACGAGC
GGGAGCCTGGTAGGGAAGGGGGGGCAGAGAGTCGGACCAGCCGGGTACGA
AAGGCTTTGAAGGACATGGGGAGGGGGGGTAGCAAAAAGTTGAGGCATGA
GAGCGTGCGGCATGGCCATTAGAGAGAAAAGAAGGGTGGGAGGG
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Coding sequence (CDS) from alignment at chr1:368406..370099-

>NO01G01440.1 ID=NO01G01440.1|Name=NO01G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=1551bp|location=Sequence derived from alignment at chr1:368406..370099- (Nannochloropsis oceanica)
ATGGCAGCCAATCAAGACTATAACAACCTGTTTGGGAGCTCCGACGAGGA
GAGCAGTGGTGAGGAAGAGGCTGAAGAGGTGGAGCAGCAGCGACAGAAGC
CCGCGACAAACTCAGCGCCCGCTCAAGCGGCTGCCTCTTCCGCCGCGGCT
GCAGGCGGGGACGCCAGCAGTAGCAGTGAAGACGAGAGCAGTGACGACGA
GGACGAACGTCTCTCGGCCAAGAAGCGTTTACAGAAAAAAGGCGTGCCCT
TAGCATCTTTGTCGTCGGACGAAAGCGAGAGCGAGGATGAGGAAGCAGCA
GCAGCAGCAACCGCTTCCCGGCCTCCCCCCAAGGCCCGCACCACAGGCAA
CGATGCCTTGAAGCGAGCCACGGCTGACTTTGACGACGAGGAAGAGGAAG
AAGAGGACCACGCGCGTAAATCCCAGACACTCCCAGATTTGAGCAGCGAT
GGGAGCAGTAGCAGCAGCAGTAGTAGTGGGGAGAGTGACTCGTCGGATGA
TGAGGGGGACTCACGCCGACGGAAGAAGGGGGCGCTCAAGAAGAAGTCGA
TGAAGACGAAGAGCAACATGATTAAGAAAAAGATCAAGGCCTCTAAGTCT
AGGAAGGAGCGGGTTGGTCGCGAAGACGGAGACGGGGAGGAGGACGACGG
TGCCGGGAGGAGCAGCAGCCAAGGCGGTGGAGGAGGGGGTGATGCTCGTC
GGGTCGGACGAGAACTGACGGTGGTGGAACAGGCATTGGCGTCTTTCAAG
CGGAATCGGTCGCAGAAGTTGCCGGATAAACAGGTGCAAGAAATGACCCA
GCGATTGATTGATGTGATGGAGGTGGCGGCAAAGGAAGACAGGCAGGCCA
TGATGCACAACAAGCCCGCGATACAGAAACTCAAGAGTTTGACCGAGGTT
CTGGATTTGTTGAAGAGCAAGCATCTACAGGGTGCCTTGGTGGATAATGG
GCAGGTGCTGGGCTTGATCAAGCAGTGGCTGCAACCGCTGCCGGATAAGA
GCTTGCCATTGTTCGCTGTGCGCACGCCGCTGATTGATTATCTGCTGACT
GCACGGGTGGAGGTGCACCGGCTCAAGGAGAGCGGAGTAGGCCGCGTCAT
CCAGCAGCTGAAAAAACACCCGGAGGAGACGGTGGAGAACAAGGCGAAGC
TTACGGAGATCGTCGATAATTGGTCCCGCCTTATCACGGGCAAGGGCACC
ACCTTGAAGAGCCGGACGAGCGAGGAGGAGATGGAGGGCCGGGAGGCACG
GCAGGCCCAGCAGGCCAAGGCAAACGCAGGAGGAGGGGGCTTTATCATGT
CGACGACGGCGCGGGGGGTGGTGATCCCGATCCGGACGGGCTTCAACTTC
AAGAAGGTGGCCTTGACATTTCGGGAGGAATTTGATAGGGGGCAGGGGAA
GGAGGACGAGGCTATGGAGGTGAACGAGCGGGAGCCTGGTAGGGAAGGGG
GGGCAGAGAGTCGGACCAGCCGGGTACGAAAGGCTTTGAAGGACATGGGG
AGGGGGGGTAGCAAAAAGTTGAGGCATGAGAGCGTGCGGCATGGCCATTA
G
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Synonyms
Publications