NO01G01280, NO01G01280 (gene) Nannochloropsis oceanica

Overview
NameNO01G01280
Unique NameNO01G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1236
Alignment locationchr1:326418..327653 -

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Properties
Property NameValue
DescriptionYcii-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:326418..327653 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel
IPR005545YCII
Homology
BLAST of NO01G01280 vs. NCBI_GenBank
Match: EWM29094.1 (ycii-like protein [Nannochloropsis gaditana])

HSP 1 Score: 559.7 bits (1441), Expect = 7.600e-156
Identity = 281/377 (74.54%), Postives = 318/377 (84.35%), Query Frame = 0
Query:   34 PAASRRHNRTMATVPPFSLLLLSFLLLALPTTISAFLF--YPNRLSGRAAGAVPRIQLLAPAGPSSSTPSYGVYQHNTVLYARRRRKGDSDADYERFDLDELRVEKRFEEVEEIDPEMFRPSKMEYYVPPPVEEIEQWDVTDTRYIAIGLDRDGDEIFREQRLPNCYLHLAWARRSYLDQRSPVSVWWDYALVREDLQGNRGNLFGMNASSASLVKAFVELDPYKKLGVYKSLKGYRWNPLKDPDLLYAPRVQFAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQLAELDVTGQHLDRQWEKYQMEENHYDPVHDLMVGWGLIK 409
            PAAS RH R  AT     LL  SFLLL + + + +F F  +P   +GR  G+V     + P G SS+ PS        VL+ARRRRKGDSDAD+ERF+LDELR EKRFEEVEE+DPEMFRPSKMEYYVPPPV++IE WD+TDTRY+A+GLD+DGDE+F EQRLPNCYLHLAWARRSYLD+RSPVSVWWDYALVR+DLQGNRGNLFGMNASS SLVKAFVELDPYKKLGVYKSL GY W PLK+PDLLYAPR+QFA++ LDK  ALP+RM TREAHLAYMR S R+VTAGPLF LDAE+GSPVGSLV+FNAE+ EEA AFI +DPY KAGLF E+FLTQ+AELDVTGQHLDR+WEKYQ+EENHYDPVHDLMVGWGL+K
Sbjct:   23 PAASSRH-RHCAT-----LLFCSFLLLDIVSPVFSFHFNTFPLLNAGRIRGSV---GAMTPFGQSSTRPS---ISSPVVLHARRRRKGDSDADFERFNLDELRDEKRFEEVEEMDPEMFRPSKMEYYVPPPVDDIEHWDMTDTRYVAVGLDKDGDEVFHEQRLPNCYLHLAWARRSYLDERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLTGYHWRPLKEPDLLYAPRLQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEKYQLEENHYDPVHDLMVGWGLVK 387          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: CEM18694.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 94.0 bits (232), Expect = 1.200e-15
Identity = 60/239 (25.10%), Postives = 101/239 (42.26%), Query Frame = 0
Query:  175 RYIAIGLDRDGDEIFREQRLPNCYLHLAWARRSYLDQRSPVSVWWDYALVREDLQGNRGNLFGMNASSASLVKAFVELDPYKKLGVYKSLKGYRWNPLKDPDLL---YAPRVQFAVVALDK-ADALPLRMATREAHLAYMRSSGRVVTAGPL--------FDLD----------------------AEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQLAELDVTGQH 380
            +++ + LD+ G E +   R P    H+ WAR S   + +   V WD  +  E  +   GNL  + A +    K F E +PY   G+Y+  + + W+ + D  L+   +     F V   D    A  +R    E H  Y+     VV +G L         +LD                        + +PVG + +   +  E+A+ +   DP+ +AGL+   F+ Q+  LD+TG+H
Sbjct:  219 KFLVVALDKPGFEWYNYGRHPQMVDHIVWARLSLRLRNATAKVLWDMTIYNETSRHGCGNLINIAAPTLKHAKEFAEKNPYFSSGLYRHHEIFEWHDIADEHLMMGAWKGEDTFLVFGKDSDLTAAKIREQLEEKHHRYLCRCANVVHSGSLKPPRQDSQEELDRPVKQIVPLIWQLKGPNPVGAMPNNETPVGEMSIITCDSLEQAKDYARRDPFTRAGLYKNLFVAQVVHLDITGRH 457          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: CBN76233.1 (COG2350: Uncharacterized protein conserved in bacteria [Ectocarpus siliculosus])

HSP 1 Score: 92.8 bits (229), Expect = 2.600e-15
Identity = 63/216 (29.17%), Postives = 104/216 (48.15%), Query Frame = 0
Query:  200 HLAWAR---RSYLDQRS-PVSVWWDYALVREDLQGNRGNLFGMNASSASLVKAFVELDPYKKLGVYKSLKGYRW-NPLKDPDLLYAPRVQFAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLD-AED---GSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQLAELDVTGQHLDRQWEKYQMEENHYDPVHDLMVGWGL 407
            H+ WAR   R++ D       + W+ +++        GN+F + + +       +E DPY+K G++ ++  YR+   +      +     +  + +DK  +  LR    +AHL Y   + R +  GP+   D AED     PVGSL+ FNA + EEAR     DP+ +AGL+   F+ +  E+D++G  L R         N  DP+ D+M   GL
Sbjct:  213 HVKWARIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKEGALRLLEEDPYRKSGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGSAKLREKNNDAHLEYYERTRRCIGEGPVLSSDLAEDSPRNKPVGSLMFFNAINDEEARETAEGDPFNQAGLYDSVFVARFNEIDLSGIGLVR--------ANRIDPMRDMMAKEGL 420          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: XP_002286598.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96239.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 84.7 bits (208), Expect = 7.200e-13
Identity = 67/229 (29.26%), Postives = 107/229 (46.72%), Query Frame = 0
Query:  200 HLAWARRSYL-----DQRSPVSVWWDYALVREDLQGNRGNLFGMNASSASLVKAFVELDPYKK--LGV-------YKSLKGYRWNPLKDPDLLY---APRVQFAVVALDKADALP--LRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSP----VGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQLAELDVTGQHLDRQWEKYQMEENHYDPVHDLMVGWG 406
            H+ WAR+  L     +  S   V W + L+  DLQ   G++  +++ +    +  +  DP  +  LGV         S+  YRW  ++D  L        +   ++A D+ +A+   LR      HL Y+  S RV+ AGPL     E   P    VG+L+++NA+D E A  F+ +DP   AGL+    + +   LDVTG+ +      Y  E+N Y  + + M  WG
Sbjct:  126 HVMWARKQNLYNDTFNMESMADVLWSHQLLSSDLQRTIGHVMCIDSPTIQHCRDALSNDPIVRSLLGVDSNGLCDASSIPLYRWRHIRDHTLRRDDGRDGLPNMLLAFDRPEAMSRGLRDEISNEHLEYLIRSERVIAAGPLHVATEEKSDPKSVAVGTLMLYNAKDREHAVEFVENDPAALAGLYESMTVHRYNSLDVTGKFVSE--NLYFPEQNTYQ-MKEAMGYWG 351          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: OYX32707.1 (hypothetical protein B7Y99_08215 [Caulobacterales bacterium 32-69-10])

HSP 1 Score: 82.8 bits (203), Expect = 2.700e-12
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 0
Query:  285 FAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGE 365
            F +  LDK D+LPLR+A R+ HLAYM +SG V   GP  D   E G+P GSLV+  AE  E  RAF+ D+PY KAGL  E
Sbjct:    4 FVISFLDKPDSLPLRLANRDEHLAYMAASGMVRLGGPYLD---EAGNPKGSLVIVEAESEEAVRAFMKDEPYNKAGLIPE 80          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: XP_009036301.1 (hypothetical protein AURANDRAFT_63580 [Aureococcus anophagefferens] >EGB09191.1 hypothetical protein AURANDRAFT_63580 [Aureococcus anophagefferens])

HSP 1 Score: 80.5 bits (197), Expect = 1.400e-11
Identity = 73/235 (31.06%), Postives = 104/235 (44.26%), Query Frame = 0
Query:  168 QWDVTDTRYIAIGLDRDGDEIFREQRLPNCYLHLAWARRSYL--DQRSPVSVWWDYALVREDLQGNRGNLF--------GMNASSASLVKAFVELDPYKKLGVYKSLK--GYRWNPLKDP----DLLYAPRVQFAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQLA----ELDVTGQHLDR 383
            +W +    ++     +DG++  R  R      HL WAR S +  D+     V+       +  Q +RG++         G  AS+A LV A    DP  + GV+   +   Y W    DP    D+       +  + LD       R ATRE HL+++R + R + AGPL  L    G+PVGSLV         A  + A DPY+ AG+FG+      A    ELDVTG  L R
Sbjct:   95 EWVIPGEAFVFARFLKDGEK-SRALRRTLHLDHLFWARESAIVADRDGGPRVY-----AAQAAQDDRGDVVASVVAVVGGDAASAAPLVAA----DPLVRAGVFDEARSGAYHWTIAGDPYLQADVWPDGESPYLHLKLDAQPGANARGATREKHLSFLRKTRRTMRAGPLRPLGDAAGAPVGSLVYAFHASRGAALDWAAADPYVDAGVFGDGVQPLAAATYCELDVTGTQLTR 319          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: WP_085790717.1 (hypothetical protein [Roseivivax jejudonensis] >SLN24724.1 YciI-like protein [Roseivivax jejudonensis])

HSP 1 Score: 80.5 bits (197), Expect = 1.400e-11
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 0
Query:  286 AVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQ 370
            A++A DK DAL +RMA REAHLAY+  +G V  AGPL     E+G+  GSLV+ +  D   A A+ ADDPY +AGLF    L +
Sbjct:    4 ALIARDKPDALEIRMANREAHLAYVEQTGVVAQAGPLI----ENGAMAGSLVILDVPDLAAAEAWAADDPYARAGLFARVELVE 83          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: WP_058313542.1 (YciI family protein [Thalassobius activus] >CUI40077.1 YciI-like protein [Thalassobius activus] >CUK24540.1 YciI-like protein [Thalassobius activus])

HSP 1 Score: 79.7 bits (195), Expect = 2.300e-11
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 0
Query:  283 VQFAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLT 369
            ++FA++A DK +AL +R+A R+AH+AY++SS  V  AGP  D    DG+  GSL+V   ED  EA+A+ A+DPY KA LF    +T
Sbjct:    1 MRFALIAKDKPNALDVRLANRDAHVAYLKSSDAVEMAGPFLD---ADGNMCGSLIVLEFEDIAEAQAWAANDPYKKADLFQSVEIT 83          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: WP_095638402.1 (hypothetical protein [Paracoccus sp. WN007] >PAU98683.1 hypothetical protein CK240_00625 [Paracoccus sp. WN007])

HSP 1 Score: 79.0 bits (193), Expect = 3.900e-11
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 0
Query:  285 FAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLF 363
            FAV+  DK   L  RM TREAHLA++  SGRV  AGP      EDG+P GSL++  A+D + A+A++A+DPY  A +F
Sbjct:    4 FAVICRDKPGRLNARMTTREAHLAWLNGSGRVQLAGPFL----EDGNPCGSLLIIEADDLDAAKAWVAEDPYAAADVF 77          
BLAST of NO01G01280 vs. NCBI_GenBank
Match: WP_076532724.1 (YciI family protein [Gemmobacter megaterium] >SIT14600.1 hypothetical protein SAMN05421774_106175 [Gemmobacter megaterium])

HSP 1 Score: 78.6 bits (192), Expect = 5.100e-11
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 0
Query:  285 FAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQ 370
            FA+  LDK  AL +R+  R AHL ++ +SG+VV AGP  + D    +PVGSLVV  A D  EA AF   DPY KAGLF +  + +
Sbjct:    3 FALTCLDKPGALQIRLDNRAAHLDFLNASGKVVFAGPFIEAD----TPVGSLVVIEAADRTEAEAFATADPYAKAGLFHDVTIRE 83          
The following BLAST results are available for this feature:
BLAST of NO01G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29094.17.600e-15674.54ycii-like protein [Nannochloropsis gaditana][more]
CEM18694.11.200e-1525.10unnamed protein product [Vitrella brassicaformis C... [more]
CBN76233.12.600e-1529.17COG2350: Uncharacterized protein conserved in bact... [more]
XP_002286598.17.200e-1329.26predicted protein [Thalassiosira pseudonana CCMP13... [more]
OYX32707.12.700e-1253.75hypothetical protein B7Y99_08215 [Caulobacterales ... [more]
XP_009036301.11.400e-1131.06hypothetical protein AURANDRAFT_63580 [Aureococcus... [more]
WP_085790717.11.400e-1150.00hypothetical protein [Roseivivax jejudonensis] >SL... [more]
WP_058313542.12.300e-1147.67YciI family protein [Thalassobius activus] >CUI400... [more]
WP_095638402.13.900e-1150.00hypothetical protein [Paracoccus sp. WN007] >PAU98... [more]
WP_076532724.15.100e-1148.24YciI family protein [Gemmobacter megaterium] >SIT1... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008234NSK008234Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01280.1NO01G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576228gene_102Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100024g10gene1561Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01280.1NO01G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01280 ID=NO01G01280|Name=NO01G01280|organism=Nannochloropsis oceanica|type=gene|length=1236bp
ATGCCTACAGGCCTGTCGCGTGCTTGCCTGAATTTTACCCTTGTCTCGGG
CTTCGGAATGCGCGGACCAGCAGCAGCCCTCCAACAACCGTCATCAGCCC
CGGCCGCCTCAAGAAGACACAACAGGACCATGGCCACTGTTCCCCCCTTC
TCGCTCCTACTCCTCTCCTTCCTCCTTCTCGCGCTGCCCACCACTATCTC
TGCCTTCCTTTTTTACCCTAACCGTTTATCGGGGCGCGCGGCGGGTGCCG
TCCCCCGCATCCAACTCTTGGCCCCTGCCGGCCCAAGTTCTTCAACTCCT
TCCTACGGCGTATATCAGCACAACACAGTCCTATACGCTCGACGGCGGCG
CAAGGGTGATTCCGACGCGGACTACGAACGCTTTGACCTGGACGAGCTGC
GTGTCGAGAAGCGCTTCGAGGAGGTAGAGGAGATTGACCCCGAGATGTTC
CGACCGTCCAAAATGGAGTACTACGTGCCTCCTCCGGTGGAGGAAATCGA
GCAATGGGACGTGACTGATACTAGATACATCGCCATTGGCCTTGATAGAG
ATGGCGATGAGATCTTTCGGGAGCAGAGGCTGCCGAATTGTTACCTGCAT
CTGGCCTGGGCCCGACGATCTTACTTAGATCAACGGAGCCCTGTGAGTGT
CTGGTGGGATTACGCGTTGGTCCGAGAGGACTTACAGGGTAACAGGGGTA
ATTTGTTCGGGATGAATGCATCGTCAGCTTCTCTTGTCAAGGCCTTCGTC
GAGCTTGACCCGTACAAGAAGTTGGGGGTTTACAAGAGTTTGAAGGGATA
CCGGTGGAACCCTCTCAAAGACCCTGACCTTCTCTACGCGCCTCGGGTGC
AATTCGCGGTGGTGGCGCTCGATAAAGCAGATGCCTTGCCCTTGAGGATG
GCGACCCGCGAGGCCCACCTTGCTTACATGCGAAGCTCAGGGAGGGTGGT
AACAGCGGGGCCGCTTTTCGACTTGGACGCCGAAGACGGGTCCCCGGTGG
GTTCGTTGGTGGTCTTCAACGCGGAAGATACGGAGGAGGCAAGGGCATTT
ATTGCTGATGATCCATACATGAAAGCGGGGTTATTTGGTGAGACCTTCTT
GACGCAATTGGCGGAATTGGACGTGACGGGGCAGCACCTGGATAGGCAGT
GGGAGAAGTACCAGATGGAGGAAAACCATTACGATCCCGTGCATGACTTG
ATGGTGGGGTGGGGTTTGATCAAGGGGGAGGAGTAG
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protein sequence of NO01G01280.1

>NO01G01280.1-protein ID=NO01G01280.1-protein|Name=NO01G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MPTGLSRACLNFTLVSGFGMRGPAAALQQPSSAPAASRRHNRTMATVPPF
SLLLLSFLLLALPTTISAFLFYPNRLSGRAAGAVPRIQLLAPAGPSSSTP
SYGVYQHNTVLYARRRRKGDSDADYERFDLDELRVEKRFEEVEEIDPEMF
RPSKMEYYVPPPVEEIEQWDVTDTRYIAIGLDRDGDEIFREQRLPNCYLH
LAWARRSYLDQRSPVSVWWDYALVREDLQGNRGNLFGMNASSASLVKAFV
ELDPYKKLGVYKSLKGYRWNPLKDPDLLYAPRVQFAVVALDKADALPLRM
ATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAF
IADDPYMKAGLFGETFLTQLAELDVTGQHLDRQWEKYQMEENHYDPVHDL
MVGWGLIKGEE*
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Synonyms
Publications