NO01G01280.1, NO01G01280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01280.1
Unique NameNO01G01280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1236
Alignment locationchr1:326418..327653 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:326418..327653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01280.1 vs.
Match: EWM29094.1 (ycii-like protein [Nannochloropsis gaditana])

HSP 1 Score: 559.3 bits (1440), Expect = 9.900e-156
Identity = 281/377 (74.54%), Postives = 318/377 (84.35%), Query Frame = 0 
Query:   34 PAASRRHNRTMATVPPFSLLLLSFLLLALPTTISAFLF--YPNRLSGRAAGAVPRIQLLAPAGPSSSTPSYGVYQHNTVLYARRRRKGDSDADYERFDLDELRVEKRFEEVEEIDPEMFRPSKMEYYVPPPVEEIEQWDVTDTRYIAIGLDRDGDEIFREQRLPNCYLHLAWARRSYLDQRSPVSVWWDYALVREDLQGNRGNLFGMNASSASLVKAFVELDPYKKLGVYKSLKGYRWNPLKDPDLLYAPRVQFAVVALDKADALPLRMATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAFIADDPYMKAGLFGETFLTQLAELDVTGQHLDRQWEKYQMEENHYDPVHDLMVGWGLIK 409
            PAAS RH R  AT     LL  SFLLL + + + +F F  +P   +GR  G+V     + P G SS+ PS        VL+ARRRRKGDSDAD+ERF+LDELR EKRFEEVEE+DPEMFRPSKMEYYVPPPV++IE WD+TDTRY+A+GLD+DGDE+F EQRLPNCYLHLAWARRSYLD+RSPVSVWWDYALVR+DLQGNRGNLFGMNASS SLVKAFVELDPYKKLGVYKSL GY W PLK+PDLLYAPR+QFA++ LDK  ALP+RM TREAHLAYMR S R+VTAGPLF LDAE+GSPVGSLV+FNAE+ EEA AFI +DPY KAGLF E+FLTQ+AELDVTGQHLDR+WEKYQ+EENHYDPVHDLMVGWGL+K
Sbjct:   23 PAASSRH-RHCAT-----LLFCSFLLLDIVSPVFSFHFNTFPLLNAGRIRGSVGA---MTPFGQSSTRPSIS---SPVVLHARRRRKGDSDADFERFNLDELRDEKRFEEVEEMDPEMFRPSKMEYYVPPPVDDIEHWDMTDTRYVAVGLDKDGDEVFHEQRLPNCYLHLAWARRSYLDERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLTGYHWRPLKEPDLLYAPRLQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEKYQLEENHYDPVHDLMVGWGLVK 387
The following BLAST results are available for this feature:
BLAST of NO01G01280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29094.19.900e-15674.54ycii-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01280NO01G01280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01280.1NO01G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01280.1.cds1NO01G01280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01280.1 ID=NO01G01280.1|Name=NO01G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp
ATGCCTACAGGCCTGTCGCGTGCTTGCCTGAATTTTACCCTTGTCTCGGG
CTTCGGAATGCGCGGACCAGCAGCAGCCCTCCAACAACCGTCATCAGCCC
CGGCCGCCTCAAGAAGACACAACAGGACCATGGCCACTGTTCCCCCCTTC
TCGCTCCTACTCCTCTCCTTCCTCCTTCTCGCGCTGCCCACCACTATCTC
TGCCTTCCTTTTTTACCCTAACCGTTTATCGGGGCGCGCGGCGGGTGCCG
TCCCCCGCATCCAACTCTTGGCCCCTGCCGGCCCAAGTTCTTCAACTCCT
TCCTACGGCGTATATCAGCACAACACAGTCCTATACGCTCGACGGCGGCG
CAAGGGTGATTCCGACGCGGACTACGAACGCTTTGACCTGGACGAGCTGC
GTGTCGAGAAGCGCTTCGAGGAGGTAGAGGAGATTGACCCCGAGATGTTC
CGACCGTCCAAAATGGAGTACTACGTGCCTCCTCCGGTGGAGGAAATCGA
GCAATGGGACGTGACTGATACTAGATACATCGCCATTGGCCTTGATAGAG
ATGGCGATGAGATCTTTCGGGAGCAGAGGCTGCCGAATTGTTACCTGCAT
CTGGCCTGGGCCCGACGATCTTACTTAGATCAACGGAGCCCTGTGAGTGT
CTGGTGGGATTACGCGTTGGTCCGAGAGGACTTACAGGGTAACAGGGGTA
ATTTGTTCGGGATGAATGCATCGTCAGCTTCTCTTGTCAAGGCCTTCGTC
GAGCTTGACCCGTACAAGAAGTTGGGGGTTTACAAGAGTTTGAAGGGATA
CCGGTGGAACCCTCTCAAAGACCCTGACCTTCTCTACGCGCCTCGGGTGC
AATTCGCGGTGGTGGCGCTCGATAAAGCAGATGCCTTGCCCTTGAGGATG
GCGACCCGCGAGGCCCACCTTGCTTACATGCGAAGCTCAGGGAGGGTGGT
AACAGCGGGGCCGCTTTTCGACTTGGACGCCGAAGACGGGTCCCCGGTGG
GTTCGTTGGTGGTCTTCAACGCGGAAGATACGGAGGAGGCAAGGGCATTT
ATTGCTGATGATCCATACATGAAAGCGGGGTTATTTGGTGAGACCTTCTT
GACGCAATTGGCGGAATTGGACGTGACGGGGCAGCACCTGGATAGGCAGT
GGGAGAAGTACCAGATGGAGGAAAACCATTACGATCCCGTGCATGACTTG
ATGGTGGGGTGGGGTTTGATCAAGGGGGAGGAGTAG
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protein sequence of NO01G01280.1

>NO01G01280.1-protein ID=NO01G01280.1-protein|Name=NO01G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MPTGLSRACLNFTLVSGFGMRGPAAALQQPSSAPAASRRHNRTMATVPPF
SLLLLSFLLLALPTTISAFLFYPNRLSGRAAGAVPRIQLLAPAGPSSSTP
SYGVYQHNTVLYARRRRKGDSDADYERFDLDELRVEKRFEEVEEIDPEMF
RPSKMEYYVPPPVEEIEQWDVTDTRYIAIGLDRDGDEIFREQRLPNCYLH
LAWARRSYLDQRSPVSVWWDYALVREDLQGNRGNLFGMNASSASLVKAFV
ELDPYKKLGVYKSLKGYRWNPLKDPDLLYAPRVQFAVVALDKADALPLRM
ATREAHLAYMRSSGRVVTAGPLFDLDAEDGSPVGSLVVFNAEDTEEARAF
IADDPYMKAGLFGETFLTQLAELDVTGQHLDRQWEKYQMEENHYDPVHDL
MVGWGLIKGEE*
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mRNA from alignment at chr1:326418..327653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01280.1 ID=NO01G01280.1|Name=NO01G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp|location=Sequence derived from alignment at chr1:326418..327653- (Nannochloropsis oceanica)
ATGCCTACAGGCCTGTCGCGTGCTTGCCTGAATTTTACCCTTGTCTCGGG
CTTCGGAATGCGCGGACCAGCAGCAGCCCTCCAACAACCGTCATCAGCCC
CGGCCGCCTCAAGAAGACACAACAGGACCATGGCCACTGTTCCCCCCTTC
TCGCTCCTACTCCTCTCCTTCCTCCTTCTCGCGCTGCCCACCACTATCTC
TGCCTTCCTTTTTTACCCTAACCGTTTATCGGGGCGCGCGGCGGGTGCCG
TCCCCCGCATCCAACTCTTGGCCCCTGCCGGCCCAAGTTCTTCAACTCCT
TCCTACGGCGTATATCAGCACAACACAGTCCTATACGCTCGACGGCGGCG
CAAGGGTGATTCCGACGCGGACTACGAACGCTTTGACCTGGACGAGCTGC
GTGTCGAGAAGCGCTTCGAGGAGGTAGAGGAGATTGACCCCGAGATGTTC
CGACCGTCCAAAATGGAGTACTACGTGCCTCCTCCGGTGGAGGAAATCGA
GCAATGGGACGTGACTGATACTAGATACATCGCCATTGGCCTTGATAGAG
ATGGCGATGAGATCTTTCGGGAGCAGAGGCTGCCGAATTGTTACCTGCAT
CTGGCCTGGGCCCGACGATCTTACTTAGATCAACGGAGCCCTGTGAGTGT
CTGGTGGGATTACGCGTTGGTCCGAGAGGACTTACAGGGTAACAGGGGTA
ATTTGTTCGGGATGAATGCATCGTCAGCTTCTCTTGTCAAGGCCTTCGTC
GAGCTTGACCCGTACAAGAAGTTGGGGGTTTACAAGAGTTTGAAGGGATA
CCGGTGGAACCCTCTCAAAGACCCTGACCTTCTCTACGCGCCTCGGGTGC
AATTCGCGGTGGTGGCGCTCGATAAAGCAGATGCCTTGCCCTTGAGGATG
GCGACCCGCGAGGCCCACCTTGCTTACATGCGAAGCTCAGGGAGGGTGGT
AACAGCGGGGCCGCTTTTCGACTTGGACGCCGAAGACGGGTCCCCGGTGG
GTTCGTTGGTGGTCTTCAACGCGGAAGATACGGAGGAGGCAAGGGCATTT
ATTGCTGATGATCCATACATGAAAGCGGGGTTATTTGGTGAGACCTTCTT
GACGCAATTGGCGGAATTGGACGTGACGGGGCAGCACCTGGATAGGCAGT
GGGAGAAGTACCAGATGGAGGAAAACCATTACGATCCCGTGCATGACTTG
ATGGTGGGGTGGGGTTTGATCAAGGGGGAGGAGTAG
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Coding sequence (CDS) from alignment at chr1:326418..327653-

>NO01G01280.1 ID=NO01G01280.1|Name=NO01G01280.1|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at chr1:326418..327653- (Nannochloropsis oceanica)
ATGCCTACAGGCCTGTCGCGTGCTTGCCTGAATTTTACCCTTGTCTCGGG
CTTCGGAATGCGCGGACCAGCAGCAGCCCTCCAACAACCGTCATCAGCCC
CGGCCGCCTCAAGAAGACACAACAGGACCATGGCCACTGTTCCCCCCTTC
TCGCTCCTACTCCTCTCCTTCCTCCTTCTCGCGCTGCCCACCACTATCTC
TGCCTTCCTTTTTTACCCTAACCGTTTATCGGGGCGCGCGGCGGGTGCCG
TCCCCCGCATCCAACTCTTGGCCCCTGCCGGCCCAAGTTCTTCAACTCCT
TCCTACGGCGTATATCAGCACAACACAGTCCTATACGCTCGACGGCGGCG
CAAGGGTGATTCCGACGCGGACTACGAACGCTTTGACCTGGACGAGCTGC
GTGTCGAGAAGCGCTTCGAGGAGGTAGAGGAGATTGACCCCGAGATGTTC
CGACCGTCCAAAATGGAGTACTACGTGCCTCCTCCGGTGGAGGAAATCGA
GCAATGGGACGTGACTGATACTAGATACATCGCCATTGGCCTTGATAGAG
ATGGCGATGAGATCTTTCGGGAGCAGAGGCTGCCGAATTGTTACCTGCAT
CTGGCCTGGGCCCGACGATCTTACTTAGATCAACGGAGCCCTGTGAGTGT
CTGGTGGGATTACGCGTTGGTCCGAGAGGACTTACAGGGTAACAGGGGTA
ATTTGTTCGGGATGAATGCATCGTCAGCTTCTCTTGTCAAGGCCTTCGTC
GAGCTTGACCCGTACAAGAAGTTGGGGGTTTACAAGAGTTTGAAGGGATA
CCGGTGGAACCCTCTCAAAGACCCTGACCTTCTCTACGCGCCTCGGGTGC
AATTCGCGGTGGTGGCGCTCGATAAAGCAGATGCCTTGCCCTTGAGGATG
GCGACCCGCGAGGCCCACCTTGCTTACATGCGAAGCTCAGGGAGGGTGGT
AACAGCGGGGCCGCTTTTCGACTTGGACGCCGAAGACGGGTCCCCGGTGG
GTTCGTTGGTGGTCTTCAACGCGGAAGATACGGAGGAGGCAAGGGCATTT
ATTGCTGATGATCCATACATGAAAGCGGGGTTATTTGGTGAGACCTTCTT
GACGCAATTGGCGGAATTGGACGTGACGGGGCAGCACCTGGATAGGCAGT
GGGAGAAGTACCAGATGGAGGAAAACCATTACGATCCCGTGCATGACTTG
ATGGTGGGGTGGGGTTTGATCAAGGGGGAGGAGTAG
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Synonyms
Publications