NO01G00490, NO01G00490 (gene) Nannochloropsis oceanica

Overview
NameNO01G00490
Unique NameNO01G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length976
Alignment locationchr1:130258..131233 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:130258..131233 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO01G00490 vs. NCBI_GenBank
Match: XP_005855959.1 (hypothetical protein NGA_0547200 [Nannochloropsis gaditana CCMP526] >EKU20402.1 hypothetical protein NGA_0547200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 290.0 bits (741), Expect = 5.400e-75
Identity = 150/207 (72.46%), Postives = 173/207 (83.57%), Query Frame = 0 
Query:    1 MADAELRQRK---AAPVPEDVVVDEGESDDEVEYEGEPDEHEMSALDYLQSQGLSLKSLKDPSNAKTGASCCGKSDGXXXXXD------SVNVKAAIKARRKKAQAEDGEKAAKKEGGIKWLPLIFLIFMMGPALFTAVDYLFSLPMFARFHRKPDVKECLINYYRKVSPERLNEVNVDDILRKYKGRESTMIRNLEGRYRRKWQCP 199
            M   ++RQRK   AA   +DVV+D+GES++EVEYE EPDEHEMSALDYL SQGLSLKSLKDPS AKTGA+C  +++G     D      + NVKAA+KARRK A AE+ EK AKKEGGIKW+PL+FL+FMMGPA+FTA DYLF LPMFARFHRKPD+++CL NYYRKVSP+RL+EVNVDDILRKYKGRESTMIRNLE RYRRKWQCP
Sbjct:    1 MVSPDIRQRKPGLAASEADDVVMDDGESEEEVEYEDEPDEHEMSALDYLHSQGLSLKSLKDPSKAKTGATC--RAEGSSRDKDGGQKEVAANVKAAMKARRKMALAEENEKQAKKEGGIKWMPLLFLLFMMGPAIFTAFDYLFQLPMFARFHRKPDMRQCLTNYYRKVSPDRLSEVNVDDILRKYKGRESTMIRNLENRYRRKWQCP 205
The following BLAST results are available for this feature:
BLAST of NO01G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855959.15.400e-7572.46hypothetical protein NGA_0547200 [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008337NSK008337Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00490.1NO01G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575943gene_26Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00490.1NO01G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00490 ID=NO01G00490|Name=NO01G00490|organism=Nannochloropsis oceanica|type=gene|length=976bp
ATGGCCGACGCGGAGCTCCGTCAACGCAAAGCAGCCCCTGTGCCCGAGGA
CGTTGTCGTGGATGAAGGGGAGAGCGACGATGAGGTTGAGTACGAGGGGG
AGCCTGACGAGCATGAGATGAGCGCGTTGGACTATTTGCAGTCGCAGGGC
TTGTCGTTAAAGTCACTCAAGGACCCGAGCAATGCGAAGACAGGAGCCTC
GTGCTGCGGGAAGAGTGATGGGGGAGGAGGAGGGGCGGATTCTGTAAACG
TCAAGGCAGCGATCAAGGCAAGAAGAAAGAAGGCTCAGGCGGAGGATGGG
GAGAAGGCGGCGAAGAAGGAGGGGGGGATTAAGTGGCTGCCATTGATATT
TTTAATCgtgagttggatttggagatggttgggtggatgtttacaaaggt
gcagggagggaagaagggtgggaacggtcggctagtttagtagattcata
ctcatctctccctccctccttccatgcttccttccttccttcctttcttc
cttgcttcctttcttccttccctcagTTCATGATGGGCCCCGCTTTGTTT
ACCGCTGTAGACTATCTCTTCTCATTGCCCATGTTTGCCCGTTTTCATCG
TAAGCCGGACGTCAAAGAGTGCTTGATCAACTACTATCGCAAGgtgggga
gggagggagggcgggagagcgggagggctggtgggagggttcagagggtt
gatagggtcctatttacatgagagaggtgttcatcttgcaggataatcca
actcgtaaactgggtcttcattcctcttgtttcaggcagaagagttagac
tgatgctgcctttctttcctttttcccttcctccttcccttcctcctgaa
tagGTGAGTCCCGAGCGCCTCAACGAAGTGAATGTGGACGATATCTTGCG
CAAGTACAAGGGGCGAGAAAGCACGATGATTCGAAACCTGGAGGGCAGGT
ATCGACGCAAATGGCAGTGCCCTTAG
back to top

protein sequence of NO01G00490.1

>NO01G00490.1-protein ID=NO01G00490.1-protein|Name=NO01G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MADAELRQRKAAPVPEDVVVDEGESDDEVEYEGEPDEHEMSALDYLQSQG
LSLKSLKDPSNAKTGASCCGKSDGGGGGADSVNVKAAIKARRKKAQAEDG
EKAAKKEGGIKWLPLIFLIFMMGPALFTAVDYLFSLPMFARFHRKPDVKE
CLINYYRKVSPERLNEVNVDDILRKYKGRESTMIRNLEGRYRRKWQCP*
back to top
Synonyms
Publications