NO01G00490.1, NO01G00490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00490.1
Unique NameNO01G00490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length597
Alignment locationchr1:130258..131233 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:130258..131233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00490.1 vs.
Match: XP_005855959.1 (hypothetical protein NGA_0547200 [Nannochloropsis gaditana CCMP526]; EKU20402.1 hypothetical protein NGA_0547200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 288.9 bits (738), Expect = 1.200e-74
Identity = 153/205 (74.63%), Postives = 172/205 (83.90%), Query Frame = 0 
Query:    1 MADAELRQRK---AAPVPEDVVVDEGESDDEVEYEGEPDEHEMSALDYLQSQGLSLKSLKDPSNAKTGASCC--GKSDGGGGGADSV--NVKAAIKARRKKAQAEDGEKAAKKEGGIKWLPLIFLIFMMGPALFTAVDYLFSLPMFARFHRKPDVKECLINYYRKVSPERLNEVNVDDILRKYKGRESTMIRNLEGRYRRKWQCP 199
            M   ++RQRK   AA   +DVV+D+GES++EVEYE EPDEHEMSALDYL SQGLSLKSLKDPS AKTGA+C   G S    GG   V  NVKAA+KARRK A AE+ EK AKKEGGIKW+PL+FL+FMMGPA+FTA DYLF LPMFARFHRKPD+++CL NYYRKVSP+RL+EVNVDDILRKYKGRESTMIRNLE RYRRKWQCP
Sbjct:    1 MVSPDIRQRKPGLAASEADDVVMDDGESEEEVEYEDEPDEHEMSALDYLHSQGLSLKSLKDPSKAKTGATCRAEGSSRDKDGGQKEVAANVKAAMKARRKMALAEENEKQAKKEGGIKWMPLLFLLFMMGPAIFTAFDYLFQLPMFARFHRKPDMRQCLTNYYRKVSPDRLSEVNVDDILRKYKGRESTMIRNLENRYRRKWQCP 205
The following BLAST results are available for this feature:
BLAST of NO01G00490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855959.11.200e-7474.63hypothetical protein NGA_0547200 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00490NO01G00490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00490.1NO01G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00490.1.cds1NO01G00490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00490.1.cds2NO01G00490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00490.1.cds3NO01G00490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00490.1 ID=NO01G00490.1|Name=NO01G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=597bp
ATGGCCGACGCGGAGCTCCGTCAACGCAAAGCAGCCCCTGTGCCCGAGGA
CGTTGTCGTGGATGAAGGGGAGAGCGACGATGAGGTTGAGTACGAGGGGG
AGCCTGACGAGCATGAGATGAGCGCGTTGGACTATTTGCAGTCGCAGGGC
TTGTCGTTAAAGTCACTCAAGGACCCGAGCAATGCGAAGACAGGAGCCTC
GTGCTGCGGGAAGAGTGATGGGGGAGGAGGAGGGGCGGATTCTGTAAACG
TCAAGGCAGCGATCAAGGCAAGAAGAAAGAAGGCTCAGGCGGAGGATGGG
GAGAAGGCGGCGAAGAAGGAGGGGGGGATTAAGTGGCTGCCATTGATATT
TTTAATCTTCATGATGGGCCCCGCTTTGTTTACCGCTGTAGACTATCTCT
TCTCATTGCCCATGTTTGCCCGTTTTCATCGTAAGCCGGACGTCAAAGAG
TGCTTGATCAACTACTATCGCAAGGTGAGTCCCGAGCGCCTCAACGAAGT
GAATGTGGACGATATCTTGCGCAAGTACAAGGGGCGAGAAAGCACGATGA
TTCGAAACCTGGAGGGCAGGTATCGACGCAAATGGCAGTGCCCTTAG
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protein sequence of NO01G00490.1

>NO01G00490.1-protein ID=NO01G00490.1-protein|Name=NO01G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MADAELRQRKAAPVPEDVVVDEGESDDEVEYEGEPDEHEMSALDYLQSQG
LSLKSLKDPSNAKTGASCCGKSDGGGGGADSVNVKAAIKARRKKAQAEDG
EKAAKKEGGIKWLPLIFLIFMMGPALFTAVDYLFSLPMFARFHRKPDVKE
CLINYYRKVSPERLNEVNVDDILRKYKGRESTMIRNLEGRYRRKWQCP*
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mRNA from alignment at chr1:130258..131233+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00490.1 ID=NO01G00490.1|Name=NO01G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=976bp|location=Sequence derived from alignment at chr1:130258..131233+ (Nannochloropsis oceanica)
ATGGCCGACGCGGAGCTCCGTCAACGCAAAGCAGCCCCTGTGCCCGAGGA
CGTTGTCGTGGATGAAGGGGAGAGCGACGATGAGGTTGAGTACGAGGGGG
AGCCTGACGAGCATGAGATGAGCGCGTTGGACTATTTGCAGTCGCAGGGC
TTGTCGTTAAAGTCACTCAAGGACCCGAGCAATGCGAAGACAGGAGCCTC
GTGCTGCGGGAAGAGTGATGGGGGAGGAGGAGGGGCGGATTCTGTAAACG
TCAAGGCAGCGATCAAGGCAAGAAGAAAGAAGGCTCAGGCGGAGGATGGG
GAGAAGGCGGCGAAGAAGGAGGGGGGGATTAAGTGGCTGCCATTGATATT
TTTAATCGTGAGTTGGATTTGGAGATGGTTGGGTGGATGTTTACAAAGGT
GCAGGGAGGGAAGAAGGGTGGGAACGGTCGGCTAGTTTAGTAGATTCATA
CTCATCTCTCCCTCCCTCCTTCCATGCTTCCTTCCTTCCTTCCTTTCTTC
CTTGCTTCCTTTCTTCCTTCCCTCAGTTCATGATGGGCCCCGCTTTGTTT
ACCGCTGTAGACTATCTCTTCTCATTGCCCATGTTTGCCCGTTTTCATCG
TAAGCCGGACGTCAAAGAGTGCTTGATCAACTACTATCGCAAGGTGGGGA
GGGAGGGAGGGCGGGAGAGCGGGAGGGCTGGTGGGAGGGTTCAGAGGGTT
GATAGGGTCCTATTTACATGAGAGAGGTGTTCATCTTGCAGGATAATCCA
ACTCGTAAACTGGGTCTTCATTCCTCTTGTTTCAGGCAGAAGAGTTAGAC
TGATGCTGCCTTTCTTTCCTTTTTCCCTTCCTCCTTCCCTTCCTCCTGAA
TAGGTGAGTCCCGAGCGCCTCAACGAAGTGAATGTGGACGATATCTTGCG
CAAGTACAAGGGGCGAGAAAGCACGATGATTCGAAACCTGGAGGGCAGGT
ATCGACGCAAATGGCAGTGCCCTTAG
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Coding sequence (CDS) from alignment at chr1:130258..131233+

>NO01G00490.1 ID=NO01G00490.1|Name=NO01G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at chr1:130258..131233+ (Nannochloropsis oceanica)
ATGGCCGACGCGGAGCTCCGTCAACGCAAAGCAGCCCCTGTGCCCGAGGA
CGTTGTCGTGGATGAAGGGGAGAGCGACGATGAGGTTGAGTACGAGGGGG
AGCCTGACGAGCATGAGATGAGCGCGTTGGACTATTTGCAGTCGCAGGGC
TTGTCGTTAAAGTCACTCAAGGACCCGAGCAATGCGAAGACAGGAGCCTC
GTGCTGCGGGAAGAGTGATGGGGGAGGAGGAGGGGCGGATTCTGTAAACG
TCAAGGCAGCGATCAAGGCAAGAAGAAAGAAGGCTCAGGCGGAGGATGGG
GAGAAGGCGGCGAAGAAGGAGGGGGGGATTAAGTGGCTGCCATTGATATT
TTTAATCTTCATGATGGGCCCCGCTTTGTTTACCGCTGTAGACTATCTCT
TCTCATTGCCCATGTTTGCCCGTTTTCATCGTAAGCCGGACGTCAAAGAG
TGCTTGATCAACTACTATCGCAAGGTGAGTCCCGAGCGCCTCAACGAAGT
GAATGTGGACGATATCTTGCGCAAGTACAAGGGGCGAGAAAGCACGATGA
TTCGAAACCTGGAGGGCAGGTATCGACGCAAATGGCAGTGCCCTTAG
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Synonyms
Publications