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NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Together creating a "Scalable Photosynthetic Yeast" chassis.

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Organisms

  • Monodopsis C141
  • Monodopsis C73
  • N. oceanica CCMP1779
  • N. gaditana B-31
  • N. salina CCMP1776
  • N. salina CCMP537
  • N. granulata CCMP529
  • N. oculata CCMP525
  • N. limnetica CCMP505
  • N. oceanica CCMP531
  • N. oceanica LAMB0001
  • N. oceanica LAMB2011
  • N. gaditana CCMP1894
  • N. gaditana CCMP526
  • N. gaditana CCMP527
  • N. oceanica KB1
  • N. oceanica BR2
  • N. oceanica IMET1
  • Vischeria C74

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Featured

  • NanDeSyn manuscript published in The Plant Journal (10/2020)
  • Configure Firefox browser to correctly load NanDeSyn website
  • PSCLSCA: Protein SubCellular Localization based on Sequences and for Comparative Analysis
  • Genome-wide searching for potential off-target sites of all Cas9 RNA-guided endonucleases (20bp-NGG)
  • miRNA target predictions based on smallRNA datasets for N. salina CCMP1776

Tools

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search

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blast

BLAST

publication

Publications

download

Download

browser

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synteny

Synteny

expressions

Expression

go enrivhment

GO enrichment

pathway

Pathway enrichment

nannocyc

NannoCyc

mutants

Mutants viewer

Expression

RNA-seq, high salt and nitrogen limitation N. salina CCMP1776
RNA-seq, N-starvation, averaged by 3 replicates N. salina CCMP1776
RNA-seq, Red/Blue/White, GSE139615 N. oceanica IMET1
RNA-seq, phosphate deprivation, GSE149904 N. oceanica IMET1
LC-MS/MS, Red/Blue/White, PXD016054 N. oceanica IMET1
RNA-seq, N-deprivation, PRJNA182180 N. oceanica IMET1
LC-MS/MS, single-cell heterogeneity, PXD008721 N. oceanica IMET1
LC-MS/MS, N+/N-, PXD016699 N. oceanica IMET1
RNA-seq, WT_HS N. oceanica IMET1
RNA-seq, HC vs VLC, PRJNA241382 N. oceanica IMET1
LC-MS/MS, C+/C-, PXD010030 N. oceanica IMET1
RNA-seq, N+/N-, PRJNA157867 N. oceanica CCMP1779
RNA-seq, blue/red light N. oceanica CCMP1779
RNA-seq, Light:dark cycle, PRJNA285666 N. oceanica CCMP1779
RNA-seq, nitrogen depletion, PRJNA174770 N. gaditana B-31
LC-MS/MS, fresh/atomized, PXD008499 N. gaditana B-31
RNA-seq, nitrogen and phosphorus deprivation, SRP229557 N. gaditana B-31

Mutants

Overexpression of NoDGAT2H in N.oceanica N. oceanica CCMP1779 Overexpression
Overexpression of NoDGAT2D in N.oceanica N. oceanica CCMP1779 Overexpression
Venus-tagged VP2 constructs N. oceanica CCMP1779 Homologous Recombination
Overexpression of PtCRTISO in N.oceanica N. oceanica IMET1 Overexpression
Overexpression of PDAT in N.gaditana N. gaditana CCMP527 Overexpression
EPA-Overproducing Mutant Strain N. oculata CCMP525 Others
EMS mutants of N.oculata N. oculata CCMP525 Others
EC7 transformants N. oceanica IMET1 CRISPR/Cas
Nannochloropsis gaditana mutant strain, S4 N. gaditana CCMP527 Others
Genome editing with PtTALEN-ARS plasmids for NoNR N. oceanica IMET1 Homologous Recombination
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Copyright @ Single-Cell Center, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences.
NanDeSyn website is best viewed with latest versions of Chrome, Firefox, Safari, Edge, and 1280*800 resolutions or higher.
 If you use NanDeSyn, please cite:  Gong, Y. et al. (2020) The NanDeSyn Database for Nannochloropsis systems and synthetic biology, PLANT J, DOI: 10.1111/TPJ.15025.