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NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Together creating a "Scalable Photosynthetic Yeast" chassis.

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    • N. oceanica IMET1
    • N. oceanica CCMP1779
    • N. gaditana B-31
    • N. salina CCMP1776
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Organisms

  • Monodopsis C141
  • Monodopsis C73
  • N. oceanica CCMP1779
  • N. gaditana B-31
  • N. salina CCMP1776
  • N. salina CCMP537
  • N. granulata CCMP529
  • N. oculata CCMP525
  • N. limnetica CCMP505
  • N. oceanica CCMP531
  • N. oceanica LAMB0001
  • N. oceanica LAMB2011
  • N. gaditana CCMP1894
  • N. gaditana CCMP526
  • N. gaditana CCMP527
  • N. oceanica KB1
  • N. oceanica BR2
  • N. oceanica IMET1
  • Vischeria C74

Stay informed

Featured

  • A genome-wide single-gene knockout mutant library of N. oceanica IMET1
  • All screened mutants from S-RNAi/M-RNAi/L-RNAi library
  • NanDeSyn manuscript published in The Plant Journal (10/2020)
  • PSCLSCA: Protein SubCellular Localization based on Sequences and for Comparative Analysis
  • miRNA target predictions based on smallRNA datasets for N. salina CCMP1776

Tools

convert

ID Converter

search

Search

blast

BLAST

publication

Publications

download

Download

browser

JBrowse

synteny

Synteny

expressions

Expression

go enrivhment

GO enrichment

pathway

Pathway enrichment

nannocyc

NannoCyc

mutants

Mutants viewer

Expression

RNA-seq, N-starvation, averaged by 3 replicates N. salina CCMP1776
RNA-seq, high salt and nitrogen limitation N. salina CCMP1776
RNA-seq, mPSo/Lao/LAmPSo N. oceanica IMET1
RNA-seq, Nitrogen-repletion N. oceanica IMET1
LC-MS/MS, Red/Blue/White, PXD016054 N. oceanica IMET1
RNA-seq, N-deprivation, PRJNA182180 N. oceanica IMET1
LC-MS/MS, single-cell heterogeneity, PXD008721 N. oceanica IMET1
LC-MS/MS, N+/N-, PXD016699 N. oceanica IMET1
RNA-seq, WT_HS N. oceanica IMET1
RNA-seq, Red/Blue/White, GSE139615 N. oceanica IMET1
RNA-seq, NO06G02500/NO08G00280 knockout mutant N. oceanica IMET1
RNA-seq, HC vs VLC, PRJNA241382 N. oceanica IMET1
LC-MS/MS, C+/C-, PXD010030 N. oceanica IMET1
RNA-seq, M4/M6/WT, PRJNA769958 N. oceanica IMET1
RNA-seq, phosphate deprivation, GSE149904 N. oceanica IMET1
RNA-seq, N+/N-, PRJNA157867 N. oceanica CCMP1779
RNA-seq, blue/red light N. oceanica CCMP1779
RNA-seq, Light:dark cycle, PRJNA285666 N. oceanica CCMP1779
RNA-seq, nitrogen depletion, PRJNA174770 N. gaditana B-31
RNA-seq, nitrogen and phosphorus deprivation, SRP229557 N. gaditana B-31
LC-MS/MS, fresh/atomized, PXD008499 N. gaditana B-31

Mutants

Genome editing with PtTALEN-ARS plasmids for NoNR N. oceanica IMET1 Homologous Recombination
Overexpression of NoDGTT5 in N.oceanica N. oceanica IMET1 Overexpression
Subcellular localization of NoDGTT1 in N.oceanica N. oceanica IMET1 Subcellular Localization
Overexpression of NO01G05250 in N.oceanica N. oceanica IMET1 Overexpression
Overexpression of NoDGAT in N.oceanica N. oceanica IMET1 Overexpression
Overexpression of NoDGTT1 in N.oceanica N. oceanica IMET1 Overexpression
Overexpression of NoDGAT2B in N.oceanica N. oceanica IMET1 Overexpression
Knockout of NoDGAT2B in N.oceanica N. oceanica IMET1 CRISPR/Cas
Overexpression of NobZIP77 in N.oceanica N. oceanica IMET1 Overexpression
Knockout of NobZIP77 in N.oceanica N. oceanica IMET1 CRISPR/Cas
Knockout of NoPDAT in N. oceanica N. oceanica IMET1 CRISPR/Cas
Overexpression of NoPDAT in N. oceanica N. oceanica IMET1 Overexpression
Subcellular localization of NoPDAT in N. oceanica N. oceanica IMET1 Subcellular Localization
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Copyright @ Single-Cell Center, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences.
NanDeSyn website is best viewed with latest versions of Chrome, Firefox, Safari, Edge, and 1280*800 resolutions or higher.
 If you use NanDeSyn, please cite:  Gong, Y. et al. (2020) The NanDeSyn Database for Nannochloropsis systems and synthetic biology, PLANT J, DOI: 10.1111/TPJ.15025.