Skip to main content
NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Together creating a "Scalable Photosynthetic Yeast" chassis.

  • Home
  • Genome
    • N. oceanica IMET1
    • N. oceanica CCMP1779
    • N. gaditana B-31
    • N. salina CCMP1776
  • Tools
    • Search
    • Publications
    • BLAST
      • BLASTN
      • BLASTX
      • TBLASTN
      • BLASTP
    • Synteny
    • Expression
    • Mutants
    • GO enrichment
    • Pathway enrichment
    • Downloads
    • ID Converter
    • Sequence retrieval
    • GO classify
    • NannoCyc
    • NannoGSMM
    • Analysis
    • Multi-expression viewer
    • PSCLSCA
    • Stocks
  • JBrowse
  • Community
    • Contact us
    • Credits
    • User Manual
  • Links
    • Addgene Plasmid for Nannochloropsis
    • Nannochloropsis wikipedia
    • SCC publications
    • Nannochloropsis wetware
    • CHOPCHOP
    • OrthoDB
    • The Free Genes Project

Search

Search form

Organisms

  • Monodopsis C141
  • Monodopsis C73
  • N. oceanica CCMP1779
  • N. gaditana B-31
  • N. salina CCMP1776
  • N. salina CCMP537
  • N. granulata CCMP529
  • N. oculata CCMP525
  • N. limnetica CCMP505
  • N. oceanica CCMP531
  • N. oceanica LAMB0001
  • N. oceanica LAMB2011
  • N. gaditana CCMP1894
  • N. gaditana CCMP526
  • N. gaditana CCMP527
  • N. oceanica KB1
  • N. oceanica BR2
  • N. oceanica IMET1
  • Vischeria C74

Stay informed

Featured

  • A genome-wide single-gene knockout mutant library of N. oceanica IMET1
  • All screened mutants from S-RNAi/M-RNAi/L-RNAi library
  • NanDeSyn manuscript published in The Plant Journal (10/2020)
  • PSCLSCA: Protein SubCellular Localization based on Sequences and for Comparative Analysis
  • miRNA target predictions based on smallRNA datasets for N. salina CCMP1776

Tools

convert

ID Converter

search

Search

blast

BLAST

publication

Publications

download

Download

browser

JBrowse

synteny

Synteny

expressions

Expression

go enrivhment

GO enrichment

pathway

Pathway enrichment

nannocyc

NannoCyc

mutants

Mutants viewer

Expression

RNA-seq, N-starvation, averaged by 3 replicates N. salina CCMP1776
RNA-seq, high salt and nitrogen limitation N. salina CCMP1776
RNA-seq, mPSo/Lao/LAmPSo N. oceanica IMET1
RNA-seq, Nitrogen-repletion N. oceanica IMET1
LC-MS/MS, Red/Blue/White, PXD016054 N. oceanica IMET1
RNA-seq, N-deprivation, PRJNA182180 N. oceanica IMET1
LC-MS/MS, single-cell heterogeneity, PXD008721 N. oceanica IMET1
LC-MS/MS, N+/N-, PXD016699 N. oceanica IMET1
RNA-seq, WT_HS N. oceanica IMET1
RNA-seq, Red/Blue/White, GSE139615 N. oceanica IMET1
RNA-seq, NO06G02500/NO08G00280 knockout mutant N. oceanica IMET1
RNA-seq, HC vs VLC, PRJNA241382 N. oceanica IMET1
LC-MS/MS, C+/C-, PXD010030 N. oceanica IMET1
RNA-seq, M4/M6/WT, PRJNA769958 N. oceanica IMET1
RNA-seq, phosphate deprivation, GSE149904 N. oceanica IMET1
RNA-seq, N+/N-, PRJNA157867 N. oceanica CCMP1779
RNA-seq, blue/red light N. oceanica CCMP1779
RNA-seq, Light:dark cycle, PRJNA285666 N. oceanica CCMP1779
RNA-seq, nitrogen depletion, PRJNA174770 N. gaditana B-31
RNA-seq, nitrogen and phosphorus deprivation, SRP229557 N. gaditana B-31
LC-MS/MS, fresh/atomized, PXD008499 N. gaditana B-31

Mutants

delta-9 fatty acid desaturases N. oceanica CCMP1779 Overexpression
delta-5 fatty acid desaturases N. oceanica CCMP1779 Overexpression
Knockout 7 genes using Cas9 stacking traits N. gaditana CCMP1894 CRISPR/Cas
SCL of carbonic anhydrase CA2 N. oceanica IMET1 Subcellular Localization
NoDGTT5 N. oceanica CCMP1779 Overexpression
NO06G03670 knockout (KO) increased neutral lipid content without compromising growth N. oceanica IMET1 CRISPR/Cas
Cas9 RNP mediated HDR for nitrate reductase N. oceanica IMET1 CRISPR/Cas
Insertions for carbonic anhydrase CAH1 N. oceanica CCMP1779 Homologous Recombination
A. thaliana WRINKLED1 N. salina CCMP1776 Overexpression
C. reinhardtii diacylglycerol acyltransferase type 2–4 N. oceanica IMET1 Overexpression
S. cerevisiae DGA1 N. salina CCMP1776 Overexpression
delta-12 fatty acid desaturase N. oceanica CCMP1779 Overexpression
CA2-knockdown N. oceanica IMET1 RNAi
  • « first
  • ‹ previous
  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • next ›
  • last »
Copyright @ Single-Cell Center, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences.
NanDeSyn website is best viewed with latest versions of Chrome, Firefox, Safari, Edge, and 1280*800 resolutions or higher.
 If you use NanDeSyn, please cite:  Gong, Y. et al. (2020) The NanDeSyn Database for Nannochloropsis systems and synthetic biology, PLANT J, DOI: 10.1111/TPJ.15025.