scaffold_171, scaffold_171 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_171
Unique Name	scaffold_171
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	28542
Alignment location	jgi.p\|Nanoce1779_2\|119557:5190..7140 +
Alignment location	jgi.p\|Nanoce1779_2\|119557:5190..7140 +
Alignment location	CDS_11937:5236..5326 +
Alignment location	CDS_11937:5491..5585 +
Alignment location	CDS_11937:5757..5837 +
Alignment location	CDS_11937:6042..6332 +
Alignment location	CDS_11937:6464..6572 +
Alignment location	CDS_11937:6670..7079 +
Alignment location	jgi.p\|Nanoce1779_2\|119559:2407..5233 +
Alignment location	jgi.p\|Nanoce1779_2\|119559:2407..5233 +
Alignment location	CDS_11936:2831..3212 +
Alignment location	CDS_11936:3329..3451 +
Alignment location	CDS_11936:3617..3714 +
Alignment location	CDS_11936:3848..3970 +
Alignment location	CDS_11936:4112..4231 +
Alignment location	CDS_11936:4338..4443 +
Alignment location	CDS_11936:4675..4737 +
Alignment location	CDS_11936:4877..4962 +
Alignment location	CDS_11936:5091..5165 +
Alignment location	jgi.p\|Nanoce1779_2\|119674:19048..19851 -
Alignment location	jgi.p\|Nanoce1779_2\|119674:19048..19851 -
Alignment location	CDS_11942:19171..19776 -
Alignment location	jgi.p\|Nanoce1779_2\|548544:7688..9507 -
Alignment location	jgi.p\|Nanoce1779_2\|548544:7688..9507 -
Alignment location	CDS_11938:8794..9492 -
Alignment location	CDS_11938:7816..8673 -
Alignment location	jgi.p\|Nanoce1779_2\|619131:32..2130 -
Alignment location	jgi.p\|Nanoce1779_2\|619131:32..2130 -
Alignment location	CDS_11935:1867..2112 -
Alignment location	CDS_11935:1670..1739 -
Alignment location	CDS_11935:1406..1522 -
Alignment location	CDS_11935:1025..1168 -
Alignment location	CDS_11935:590..712 -
Alignment location	CDS_11935:196..311 -
Alignment location	CDS_11935:32..57 -
Alignment location	jgi.p\|Nanoce1779_2\|619160:21885..26242 -
Alignment location	jgi.p\|Nanoce1779_2\|619160:21885..26242 -
Alignment location	CDS_11943:22502..23992 -
Alignment location	jgi.p\|Nanoce1779_2\|635100:10083..13007 +
Alignment location	jgi.p\|Nanoce1779_2\|635100:10083..13007 +
Alignment location	CDS_11939:10090..12825 +
Alignment location	jgi.p\|Nanoce1779_2\|651305:26954..27903 +
Alignment location	jgi.p\|Nanoce1779_2\|651305:26954..27903 +
Alignment location	CDS_11945:26954..27047 +
Alignment location	CDS_11945:27257..27903 +
Alignment location	jgi.p\|Nanoce1779_2\|675911:13026..15112 -
Alignment location	jgi.p\|Nanoce1779_2\|675911:13026..15112 -
Alignment location	CDS_11940:14795..14999 -
Alignment location	CDS_11940:14008..14450 -
Alignment location	CDS_11940:13564..13761 -
Alignment location	CDS_11940:13066..13299 -
Alignment location	jgi.p\|Nanoce1779_2\|675912:15183..18983 +
Alignment location	jgi.p\|Nanoce1779_2\|675912:15183..18983 +
Alignment location	CDS_11941:15368..15455 +
Alignment location	CDS_11941:15568..17395 +
Alignment location	CDS_11941:17655..18495 +
Alignment location	jgi.p\|Nanoce1779_2\|119557:5236..7079 +
Alignment location	jgi.p\|Nanoce1779_2\|119559:2831..5165 +
Alignment location	jgi.p\|Nanoce1779_2\|119674:19171..19776 -
Alignment location	jgi.p\|Nanoce1779_2\|548544:7816..9492 -
Alignment location	jgi.p\|Nanoce1779_2\|619131:32..2112 -
Alignment location	jgi.p\|Nanoce1779_2\|619160:22502..23992 -
Alignment location	jgi.p\|Nanoce1779_2\|635100:10090..12825 +
Alignment location	jgi.p\|Nanoce1779_2\|651305:26954..27903 +
Alignment location	jgi.p\|Nanoce1779_2\|675911:13066..14999 -
Alignment location	jgi.p\|Nanoce1779_2\|675912:15368..18495 +
Alignment location	ncniL027:33..27903 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|119557	gene	jgi.p\|Nanoce1779_2\|119557:5190..7140 +
jgi.p\|Nanoce1779_2\|119557	mRNA	jgi.p\|Nanoce1779_2\|119557:5190..7140 +
CDS_11937	CDS	CDS_11937:5236..5326 +
CDS_11937	CDS	CDS_11937:5491..5585 +
CDS_11937	CDS	CDS_11937:5757..5837 +
CDS_11937	CDS	CDS_11937:6042..6332 +
CDS_11937	CDS	CDS_11937:6464..6572 +
CDS_11937	CDS	CDS_11937:6670..7079 +
jgi.p\|Nanoce1779_2\|119559	gene	jgi.p\|Nanoce1779_2\|119559:2407..5233 +
jgi.p\|Nanoce1779_2\|119559	mRNA	jgi.p\|Nanoce1779_2\|119559:2407..5233 +
CDS_11936	CDS	CDS_11936:2831..3212 +
CDS_11936	CDS	CDS_11936:3329..3451 +
CDS_11936	CDS	CDS_11936:3617..3714 +
CDS_11936	CDS	CDS_11936:3848..3970 +
CDS_11936	CDS	CDS_11936:4112..4231 +
CDS_11936	CDS	CDS_11936:4338..4443 +
CDS_11936	CDS	CDS_11936:4675..4737 +
CDS_11936	CDS	CDS_11936:4877..4962 +
CDS_11936	CDS	CDS_11936:5091..5165 +
jgi.p\|Nanoce1779_2\|119674	gene	jgi.p\|Nanoce1779_2\|119674:19048..19851 -
jgi.p\|Nanoce1779_2\|119674	mRNA	jgi.p\|Nanoce1779_2\|119674:19048..19851 -
CDS_11942	CDS	CDS_11942:19171..19776 -
jgi.p\|Nanoce1779_2\|548544	gene	jgi.p\|Nanoce1779_2\|548544:7688..9507 -
jgi.p\|Nanoce1779_2\|548544	mRNA	jgi.p\|Nanoce1779_2\|548544:7688..9507 -
CDS_11938	CDS	CDS_11938:8794..9492 -
CDS_11938	CDS	CDS_11938:7816..8673 -
jgi.p\|Nanoce1779_2\|619131	gene	jgi.p\|Nanoce1779_2\|619131:32..2130 -
jgi.p\|Nanoce1779_2\|619131	mRNA	jgi.p\|Nanoce1779_2\|619131:32..2130 -
CDS_11935	CDS	CDS_11935:1867..2112 -
CDS_11935	CDS	CDS_11935:1670..1739 -
CDS_11935	CDS	CDS_11935:1406..1522 -
CDS_11935	CDS	CDS_11935:1025..1168 -
CDS_11935	CDS	CDS_11935:590..712 -
CDS_11935	CDS	CDS_11935:196..311 -
CDS_11935	CDS	CDS_11935:32..57 -
jgi.p\|Nanoce1779_2\|619160	gene	jgi.p\|Nanoce1779_2\|619160:21885..26242 -
jgi.p\|Nanoce1779_2\|619160	mRNA	jgi.p\|Nanoce1779_2\|619160:21885..26242 -
CDS_11943	CDS	CDS_11943:22502..23992 -
jgi.p\|Nanoce1779_2\|635100	gene	jgi.p\|Nanoce1779_2\|635100:10083..13007 +
jgi.p\|Nanoce1779_2\|635100	mRNA	jgi.p\|Nanoce1779_2\|635100:10083..13007 +
CDS_11939	CDS	CDS_11939:10090..12825 +
jgi.p\|Nanoce1779_2\|651305	gene	jgi.p\|Nanoce1779_2\|651305:26954..27903 +
jgi.p\|Nanoce1779_2\|651305	mRNA	jgi.p\|Nanoce1779_2\|651305:26954..27903 +
CDS_11945	CDS	CDS_11945:26954..27047 +
CDS_11945	CDS	CDS_11945:27257..27903 +
jgi.p\|Nanoce1779_2\|675911	gene	jgi.p\|Nanoce1779_2\|675911:13026..15112 -
jgi.p\|Nanoce1779_2\|675911	mRNA	jgi.p\|Nanoce1779_2\|675911:13026..15112 -
CDS_11940	CDS	CDS_11940:14795..14999 -
CDS_11940	CDS	CDS_11940:14008..14450 -
CDS_11940	CDS	CDS_11940:13564..13761 -
CDS_11940	CDS	CDS_11940:13066..13299 -
jgi.p\|Nanoce1779_2\|675912	gene	jgi.p\|Nanoce1779_2\|675912:15183..18983 +
jgi.p\|Nanoce1779_2\|675912	mRNA	jgi.p\|Nanoce1779_2\|675912:15183..18983 +
CDS_11941	CDS	CDS_11941:15368..15455 +
CDS_11941	CDS	CDS_11941:15568..17395 +
CDS_11941	CDS	CDS_11941:17655..18495 +
jgi.p\|Nanoce1779_2\|119557	polypeptide	jgi.p\|Nanoce1779_2\|119557:5236..7079 +
jgi.p\|Nanoce1779_2\|119559	polypeptide	jgi.p\|Nanoce1779_2\|119559:2831..5165 +
jgi.p\|Nanoce1779_2\|119674	polypeptide	jgi.p\|Nanoce1779_2\|119674:19171..19776 -
jgi.p\|Nanoce1779_2\|548544	polypeptide	jgi.p\|Nanoce1779_2\|548544:7816..9492 -
jgi.p\|Nanoce1779_2\|619131	polypeptide	jgi.p\|Nanoce1779_2\|619131:32..2112 -
jgi.p\|Nanoce1779_2\|619160	polypeptide	jgi.p\|Nanoce1779_2\|619160:22502..23992 -
jgi.p\|Nanoce1779_2\|635100	polypeptide	jgi.p\|Nanoce1779_2\|635100:10090..12825 +
jgi.p\|Nanoce1779_2\|651305	polypeptide	jgi.p\|Nanoce1779_2\|651305:26954..27903 +
jgi.p\|Nanoce1779_2\|675911	polypeptide	jgi.p\|Nanoce1779_2\|675911:13066..14999 -
jgi.p\|Nanoce1779_2\|675912	polypeptide	jgi.p\|Nanoce1779_2\|675912:15368..18495 +
ncniL027	syntenic_region	ncniL027:33..27903 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications