jgi.p|Nanoce1779_2|119557, gene_11937 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|119557
Unique Namegene_11937
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_171:5190..7140 +

Link to JBrowse

Properties
Property NameValue
TranscriptId119643
ProteinId119557
Product nameMajor facilitator superfamily domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:5190..7140 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015520tetracycline:proton antiporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015904tetracycline transport
GO:0046677response to antibiotic
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL027ncniL027Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|119557mRNA_11937-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|119557mRNA_11937Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|119557

>mRNA_11937-protein ID=mRNA_11937-protein|Name=jgi.p|Nanoce1779_2|119557|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MLCCLVASFVSLSLVARAKTLPQVAFGRVIGGMFGGFVPLAQSAVADLVP
VEGRAKFLGRIQACMGAGFVAGPALGLLGSRVFELDSRGILKRAAILPAV
SFCYAFVFIKETKASVLLDRARRSQGNIGSSTSSTSTVTTARPTPLSTPM
DENVAFPILPVRLLVLNGFLLMYAFSVETVYAMFIKDNFGYGETALGAVF
ALNGIAVGLLQVFLIKDLFARLGKHMMLAFGNLLLALGMVGLSLLRYKLW
HFSMFSLHIIGYAISDTALASLISRYSAPEHQGRNLGWSHAAQSCARIIS
PLVAGMLYEWSKEPGHPLPPGALPYIAGSAFPLLGVMVPTILYLKSIERK
RILAAEGG*
back to top
Synonyms
Publications